Nucleosides and nucleotides. 3. Polycondensation of thymidine-3'-phosphate by the triester method

Condensation of a mixture of 25 mole per cent of 5′-O-p-methoxy-trityl-thymidine3′-[(β-cyanoethyl)phosphate] and 75 mole per cent of thymidine 3′-[(β-cyanoethyl)phosphate] in pyridine yielded a mixture of oligonucleotides, the largest being the pentanucleotide. It was demonstrated that longer chains are not obtained due to the formation of a C-pyridinium-thymidine nucleotide. For avoiding this undesired side reaction, the condensation was carried out using sym.-collidine as solvent. The analogous side reaction was not observed, longer chains of oligonucleotide were not obtained, however.     

Nucleic acid related compounds. 81. Syntheses of 9-(3-deoxy-β-D-threo-pentofuranosyl)adenine,the core nucleoside of the extraordinarily selective antibiotic agrocin 84, and simplified structural component analogues

Alternative syntheses of 9-(3-deoxy-β-D-threo-pentofuranosyl)adenine ( 4 ), the core nucleoside of agrocin 84 [and its 2′-deoxy threo isomer 5 ] were devised: (1) direct conversion of 9-(β-D-arabinofuranosyl)adenine into 9-(2,3-anhydro-β-D-lyxofuranosyl)adenine and regioselective opening of its oxirane ring with sodium borohy-dride to give 4 and 5 (?7.5:1); (2) treatment of adenosine with sodium hydride and 2,4,6-triisopropylbenzene-sulfonyl chloride, and subjection of the resulting 2′(3′)-sulfonates to the reductive [1,2]-hydride shift rearrangement with lithium triethylborohydride to give 4 and 5 (? 2:1); and (3) subjection of the phenoxythiocar-bonyl esters of 9-[2(3),5-bis-O-(tert-butyldimethylsilyl)-β-D-arabinofuranosyl]adenine to Barton deoxygenation, and deprotection to give 4 and 2′-deoxyadenosine (?5:1). Methods (2) and (3) gave lower yields. Syntheses of simplified 6-N- and 5′-O-adenosine phosphoramidate model compounds were explored to examine potential access to such features in the structure proposed for agrocin 84.     

New cytotoxic flavonoids from aerial parts of Platycladus orientalis L.

Abstract

Investigation of Platycladus orientalis yielded five flavonoids, including aglycone flavone 1 (apigenin), flavone glycoside 2 (apigenin 7-O-β-D-glucopyranoside), new gernaylated flavone glycoside 3 (apigenin 8-gernayl-4′-O-α-gluco pyranoside) and two new pernylated flavonoid glycosides 4 & 5 (apigenin 8-pernyl-4′-glucopyranosyl-7-O-α-glucopyranoside and apigenin 5-pernyl-7-glucopyranosyl-4′-O-β-D-glucopyranoside). Their structures were elucidated on the basis of spectroscopic evidence. The cytotoxicity of compounds 1–5 were tested against Lung adenocarcinoma (A549), human hepatocellular liver carcinoma (HepG2), human breast carcinoma (MCF-7) cell lines and mouse fibroblast cell line NIH/3T3 as normal cells. This assay gave spot on structure activity relationship which, showed that cytotoxicity of compounds (1) and (2) against three cell lines was weak as IC₅₀?>?15. Compounds (4) and (5) had moderate cytotoxic and no toxic effect on normal cell. Compound (3) showed high cytotoxic activity against tested three cell lines with no toxic effect of normal cells.

     

Nucleoside und Nucleotide. Teil 10. Synthese von Thymidylyl-(3′-5′) -thymidylyl-(3′-5′)-1-(2′-desoxy-β-D-ribofuranosyl)-2(1 H)-pyridon

Nucleosides and Nucleotides. Part 10. Synthesis of Thymidylyl-(3′-5′)-thymidylyl-(3′-5′)-1-(2′-deoxy-β-D - ribofuranosyl)-2(1 H)-pyridone The synthesis of 5′-O-monomethoxytritylthymidylyl-(3′-5′)-thymidylyl-(3′-5′)-1-(2′-deoxy-β-D -ribofuranosyl)-2(1H)-pyridone ((MeOTr)T_dpT_dp∏_d, 5 ) and of thymidylyl-(3′-5′)-thymidylyl-(3′-5′)-1-(2′-deoxy-β-D -ribofuranosyl)-2(1 H)-pyridone (T_dpT_dp∏_d, 11 ) by condensing (MeOTr) T_dpT_d ( 3 ) and p∏_d(Ac) ( 4 ) in the presence of DCC in abs. pyridine is described. Condensation of (MeOTr) T_dpT_dp ( 6 ) with Π_d(Ac) ( 7 ) did not yield the desired product 5 because compound 6 formed the 3′-pyrophosphate. The removal of the acetyl- and p-methoxytrityl protecting group was effected by treatment with conc. ammonia solution at room temperature, and acetic acid/pyridine 7 : 3 at 100°, respectively. Enzymatic degradation of the trinucleoside diphosphate 11 with phosphodiesterase I and II yielded T_d, pT_d and p∏_d, T_dp and Π_d, respectively, in correct ratios.     

Saponins from the roots of Chenopodium bonus-henricus L.

Two new glycosides of phytolaccagenin and 2β-hydroxyoleanoic acid, namely bonushenricoside A (3) and bonushenricoside B (5) together with four known saponins, respectively compounds 3-O-L-α-arabinopyranosyl-bayogenin-28-O-β-glucopyranosyl ester (1), 3-O-β-glucuronopyranosyl-2β-hydroxygypsogenin-28-O-β-glucopyranosyl ester (2), 3-O-β-glucuronopyranosyl-bayogenin-28-O-β-glucopyranosyl ester (4) and 3-O-β-glucuronopyranosyl-medicagenic acid-28-β-xylopyranosyl(1→4)-α-rhamnopyranosyl(1→2)-α-arabinopyranosyl ester (6) were isolated from the roots of Chenopodium bonus-henricus L. The structures of the compounds were determined by means of spectroscopic methods (1D and 2D NMR, IR and HRMS). The MeOH extract and compounds were tested for cytotoxic activity on five leukemic cell lines (HL-60, SKW-3, Jurkat E6-1, BV-173 and K-562). In addition, the ability of metanolic extract and saponins to modulate the interleukin-2 production in PHA/PMA stimulated Jurkat E6-1 cells was investigated as well.     

Stereoselective synthesis of 3-azido-2,3-dideoxy-D-ribose derivatives and its utilization for the synthesis of anti-HIV nucleosides

Detail account of the synthesis of 3′-azido nucleosides utilizing 3-azido-2,3-dideoxy-D-ribose derivative 7 as the key intermediate was described. The key intermediate 7 was synthesized from D-mannitol in 8 steps in a preparative scale. The Michael reaction of the azide group with α,β-unsaturated-γ-butyrolactone 4 was affected by the steric bulkiness of the substituent at the 5-O position. A bulky t-butyldiphenylsilyl substitution at 5-O gave almost exclusively the α-azido adduct 5b , while unsubstitution at 5-O produced 1:1 mixture of α-and β-adducts. The ratio of α to β anomers in the condensation between azido acetate 7a and pyrimidine bases for the preparation of AZT and AZDU was greatly influenced by the solvent and the Lewis acid catalyst used. In the synthesis of 12 (AZDU, CS-87), the combination of dichloroethane and trimethylsilyl triflate gave an optimal result, while in the case of 14 (AZT), various conditions gave similar ratio of α,β anomers. The azido intermediate 7b was also utilized for the synthesis of several 3′-azido purine-like nucleosides 16–27 . The glycosylation was also affected by the Lewis acid catalyst. Boron trifluoride etherate gave the desired N₁-glycosylated compounds in which the α-anomer was major, but other catalysts such as trimethylsilyl triflate or stannic chloride produced N₂-glycosylated compounds as the major products. The newly synthesized purine-like compounds have been tested against HIV, however, none of them showed any significant activity.     

Carotenoids of Rhizobia. I. New Carotenoids from Rhizobium lupini

The main pigments of Rhizobium lupini were 2,3,2′,3′-di-trans-tetrahydroxy-β,β-caroten-4-one and 2,3,2′,3′-di-trans-tetrahydroxy-β,β-carotene. As minor components 7,8,7′,8′-tetrahydro-ψ, ψ-carotene (ζ-carotene), β, β-carotene (β-carotene), and tentatively, a 2,3,2′(or 3′)-trihydroxy-β, β-caroten-4-one and a 2,3,2′(or 3′)-trihydroxy-β, β-carotene were identified.     

Nucleotides. Part XLV. Synthesis of new (2′–5′)adenylate trimers,containing 5′-amino-5′-deoxyadenosine residues at the 5′-end of the oligoadenylate chain,and of its analogues,carrying a 9-[(2-hydroxyethoxy)methyl]adenine residue at the 2′-terminus

The 5′-amino-5′-deoxy-2′,3′-O-isopropylideneadenosine ( 4 ) was obtained in pure form from 2′,3′-O-isopropylideneadenosine ( 1 ), without isolation of intermediates 2 and 3 . The 2-(4-nitrophenyl)ethoxycarbonyl group was used for protection of the NH₂ functions of 4 (→7) . The selective introduction of the palmitoyl (= hexadecanoyl) group into the 5′-N-position of 4 was achieved by its treatment with palmitoyl chloride in MeCN in the presence of Et₃N (→ 5 ). The 3′-O-silyl derivatives 11 and 14 were isolated by column chromatography after treatment of the 2′,3′-O-deprotected compounds 8 and 9 , respectively, with (tert-butyl)dimethylsilyl chloride and 1H-imidazole in pyridine. The corresponding phosphoramidites 16 and 17 were synthesized from nucleosides 11 and 14 , respectively, and (cyanoethoxy)bis(diisopropylamino)phosphane in CH₂Cl₂. The trimeric (2′–5′)-linked adenylates 25 and 26 having the 5′-amino-5′-deoxyadenosine and 5′-deoxy-5′-(palmitoylamino)adenosine residue, respectively, at the 5′-end were prepared by the phosphoramidite method. Similarly, the corresponding 5′-amino derivatives 27 and 28 carrying the 9-[(2-hydroxyethoxy)methyl]adenine residue at the 2′-terminus, were obtained. The newly synthesized compounds were characterized by physical means. The synthesized trimers 25–28 were 3-, 15-, 25-, and 34-fold, respectively, more stable towards phosphodiesterase from Crotalus durissus than the trimer (2′–5′)ApApA.     

Carotinoide mit 7-Oxabicyclo[2.2.1]heptyl-Endgruppen. Teil I. Versuch einer Synthese von Cycloviolaxanthin (= (3S,5R,6R,3′S,5′R,6′R)-3,6:3′,6′-Diepoxy-5,6,5′,6′-tetrahydro-β,β-carotin-5,5′-diol)

Carotenoids with 7-Oxabicyclo[2,2.1]heptyl End Groups. Attempted Synthesis of Cycloviolaxanthin ( = (3S,5R,6S,3′S,5′R,6′R)-3,6:3′,6′- Diepoxy-5,6,5′,6′-tetrahydro-β,β-carotin-5,5′-diol) Starting from our recently described synthon (+)- 24 , the enantiomerically pure 3,6:4,5:3′,6′:4′,5′-tetraepoxy-4,5,4′,5′-tetrahydro-ε,ε-carotene ( 34 ) and its 15,15′-didehydro analogue 32 were synthesized in eleven and nine steps, respectively (Scheme 4). Chiroptical data show, in contrast to the parent ε,ε-carotene, a very weak interaction between the chiral centers at C(5), C(5′), C(6), C(6′), and the polyene system. Diisobutylaluminium hydride reduction of 32 lead rather than to the expected 15,15′-didehydro analogue 35 of Cycloviolaxanthin ( 8 ), to the polyenyne 36 (Scheme 5). We explain this reaction by an oxirane rearrangement leading to a cyclopropyl ether followed by a fragmentation to an aldehyd on the one side and an enol ether on the other (Scheme 6). This complex rearrangement includes a shift of the whole polyenyne chain from C(6), C(6′) to C(5), C(5′) of the original molecule.     

Catalytic degradation of lignin model compounds in acidic imidazolium based ionic liquids: Hammett acidity and anion effects

Ionic liquids based on the 1-methylimidazolium cation with chloride, bromide, hydrogen sulfate, and tetrafluoroborate counterions along with 1-butyl-3-methylimidazolium hydrogen sulfate were employed to degrade two lignin model compounds, guaiacylglycerol-β-guaiacyl ether and veratrylglycerol-β-guaiacyl ether. The acidity of each ionic liquid was approximated using 3-nitroaniline as an indicator to measure the Hammett acidity (H₀). While all of the tested ionic liquids were strongly acidic (H₀ between 1.48 and 2.08), the relative acidity did not correlate with the ability of the ionic liquid to catalyze β-O-4 ether bond hydrolysis. The reactivity of the model compounds in the ionic liquids is dependent not only on the acidity, but also on the nature of the ions and their interaction with the model compounds.     

Increased rates of initiation of polymerization by 4-4′-dicyano-4-4′-azopentanoic acid in the presence of ferric salts

The initiation of the polymerization of acrylamide by 4-4′-dicyano-4-4′-azopentanoic acid in aqueous solution has been studied kinetically at 25°C. Ferric chloride and ferric sulfate were used to terminate polymerization so that rates of initiation could be calculated from the rates of production of ferrous iron. Velocity coefficients at 25°C. for the initiation reaction were found to be (25.7 ± 2.8) × 10^?7 sec.^?1 for the ferric chloride terminated reaction and (73.6 ± 0.6) × 10^?7 sec.^?1 for the ferric sulfate-terminated polymerization. The value reported for the initiation reaction when acrylamide is polymerized in the absence of metal salts is 1.29 × 10^?7 sec.^?1. Velocity coefficients for the termination reaction have been calculated from the overall rates of polymerization obtained with ferric salts present. In the case of the ferric chloride-terminated reaction, it has been shown that the rate of polymerization is reduced by increasing the total concentration of chloride ions. Termination velocity coefficients at 25°C. for the inner sphere complexes FeCl²⁺·5H₂O and FeSO₄⁺·4H₂O have been calculated to be 18.9 × 10⁴ and 7.98 × 10⁴ l./mole-sec., respectively. The dependence on the concentration of ferric chloride of the molecular weights of the polymers produced has also been considered.     

Nucleotides. Part XXXVI. Syntheses and biological characterization of phosphorothioate analogues of (3′–5′)adenylate trimer

The four protected diastereoisomcrs 7a / 7b and 8a / 8b P-thioadenylyl-(3′–5′)-P-thioadenylyI-(3′–5′)-adenosine were synthesized, separated, and deblocked to the free oligonucleotides (Scheme). Biochemical characterization of these (3′–5′)phosphorothioate analogues of adenyiate trimer indicate that these compounds, and the corresponding 5′-monophosphates, neither bind to nor activate RNase L, and are considered to be valuable control compounds in screening experiments.     

Synthesis and Characterization of New 5‐Linked Pinoresinol Lignin Models

Pinoresinol structures, featuring a β‐β′‐linkage between lignin monomer units, are important in softwood lignins and in dicots and monocots, particularly those that are downregulated in syringyl‐specific genes. Although readily detected by NMR spectroscopy, pinoresinol structures largely escaped detection by β‐ether‐cleaving degradation analyses presumably due to the presence of the linkages at the 5 positions, in 5‐5′‐ or 5‐O‐4′‐structures. In this study, which is aimed at helping better understand 5‐linked pinoresinol structures by providing the required data for NMR characterization, new lignin model compounds were synthesized through biomimetic peroxidase‐mediated oxidative coupling reactions between pre‐formed (free‐phenolic) coniferyl alcohol 5‐5′‐ or 5‐O‐4′‐linked dimers and a coniferyl alcohol monomer. It was found that such dimers containing free‐phenolic coniferyl alcohol moieties can cross‐couple with the coniferyl alcohol producing pinoresinol‐containing trimers (and higher oligomers) in addition to other homo‐ and cross‐coupled products. Eight new lignin model compounds were obtained and characterized by NMR spectroscopy, and one tentatively identified cross‐coupled β‐O‐4′‐product was formed from a coniferyl alcohol 5‐O‐4′‐linked dimer. It was demonstrated that the 5‐5′‐ and 5‐O‐4′‐linked pinoresinol structures could be readily differentiated by using heteronuclear multiple‐bond correlation (HMBC) NMR spectroscopy. With appropriate modification (etherification or acetylation) to the newly obtained model compounds, it would be possible to identify the 5‐5′‐ or 5‐O‐4′‐linked pinoresinol structures in softwood lignins by 2D HMBC NMR spectroscopic methods. Identification of the cross‐coupled dibenzodioxocin from a coniferyl alcohol 5‐5′‐linked moiety suggested that thioacidolysis or derivatization followed by reductive cleavage (DFRC) could be used to detect and identify whether the coniferyl alcohol itself undergoes 5‐5′‐cross‐linking during lignification.     

Abrasive Stripping Voltammetric Studies of Lignin and Lignin Model Compounds

Lignin is potentially a major renewable, nonfossil source of aromatic and cyclohexyl compounds. In this study, we have investigated the abrasive stripping voltammetry of lignin and four lignin model compounds in the room temperature ionic liquids (RTILs) [C₄mim][NTf₂], [N_6,2,2,2][NTf₂] and [C₄mim][OTf] (where [C₄mim]⁺=1‐butyl‐3‐methylimidazolium, [N_6,2,2,2]⁺=n‐hexyltriethylammonium, [NTf₂]^?=bis(trifluoromethanesulfonyl)imide and [OTf]^? =trifluoromethanesulfonate) on a gold macrodisk and in 0.1 M H₂SO₄ and 0.1 M NaOH on a boron‐doped diamond (BDD) macroelectrode, with the hope of using the voltammetry to fingerprint the functional groups within the lignin molecule. The use of RTILs on metal electrodes, or either acidic or basic media in combination with BDD electrodes allows solvent systems with wide electrochemical potential windows, useful for studying voltammetry which may be difficult to observe in systems where early breakdown of the solvent occurs.     

Synthesis and chemistry of some pyridazine nucleosides related to certain 5-substituted pyrimidine nucleosides

Condensation of 3,4-dichloro-6-[(trimethylsilyl)oxy] pyridazine ( 3 ) with 1-O-acetyl-2,3,5-tri-O-benzoyl-β- D -ribofuranose ( 4 ), by the stannic chloride catalyzed procedure, has furnished 3,4-dichloro-1-(2,3,5-tri-O-benzoyl-β- D -ribofuranosyl) pyridazin-6-one ( 5 ). Nucleophilic displacement of the chloro groups and removal of the benzoyl blocking groups from 5 has furnished 3-chloro-4-methoxy-, 3,4-dimethoxy-, 4-amino-3-chloro-, 3-chloro-4-methylamino-, 3-chloro-4-hydroxy-, and 4-hydroxy-3-methoxy-1-β- D -ribofuranosylpyridazin-6-one. An unusual reaction of 5 with dimethylamine is reported. Condensation of 4,5-dichloro-3-nitro-6-[(trimethylsilyl)oxy]pyridazine with 4 yielded 4,5-dichloro-3-nitro-1-(2,3,5-tri-O-benzoyl-β- D -ribofuranosyl)pyridazin-6-one ( 24 ). Nucleophilic displacement of the aromatic nitro groups from 24 is discussed. Condensation of 3 with 3,5-di-O-p-toluoyl 2-deoxy- D -erythro-pentofuranosyl chloride ( 28 ) afforded an α, β mixture of 2-deoxy nucleosides. The synthesis of certain 3-substituted pyridazine 2′-deoxy necleosides are reported.     

Xylose-DNA Containing the Four Natural Bases

Oligonucleotides containing (2′-deoxy-β-D -xylofuranosyl)guanine have been prepared. For this purpose 2-aminoadenosine ( 5 ) was synthesized and converted to 2′-deoxy-β-D -xyloguanosine ( 1 ). The related 2′-deoxy-β-D -xyloisoguanosine ( 3 ) and 2′-deoxy-β-D -xyloxanthosine ( 4 ) were also synthesized. Compound 1 was converted to the phosphonate and phosphoramidite building blocks 10 and 11 , respectively. The oligodeoxynucleotide (5′-3′)d(xG-xT-xA-xG-xA-xA-xT-xT-xC-xT-xA-xC-T) ( 18 ) formed a duplex with the same T_m as the parent (5′-3′)-(G-T-A-G-A-A-T-T-C-T-A-C) ( 19 ), but with an inverted CD spectrum.     

Studies on imidazole derivatives and related compounds. 3. Regioselective glycosylation of 4-carbamoylimidazolium-5-olate

In the synthesis of glycosyl derivatives of 4-carbamoylimidazolium-5-olate ( 2 ) by the silyl-Hilbert-Johnson method using trimethylsilyl trifluoromethanesulfonate as catalyst, we obtained N-3 nucleosides 5 as major products and N-1,N-bis-nucleosides 6 as minor ones. The desired N-1 nucleosides 4 were isolated in only low yields. However, the yields of 4 were improved by adding ca. One equivalent of stannic chloride to the silylated 4-carbamoylimidazolium-5-olate ( 3 ). On the basis of nuclear magnetic resonance (¹³C and ²⁹Si) and ultraviolet spectroscopic studies, we verify the formation of σ-complexes between the silylated base 3 and the Lewis acid (stannic chloride or trimethylsilyl trifluoromethanesulfonate), and the propose the structures of these complexes and the reaction mechanism.     

Reaction of Peracylated Sugars with Nitriles Catalyzed by Lewis Acids

Abstract

The reaction of acetylaminoacetonitrile with penta-O-benzoyl-α-D-glucopyranose in dichloromethane-nitromethane, in a 1:1 stoichiometric proportion, catalysed by stannic chloride, gave a nitrilium salt that, after hydrolysis, afforded the corresponding N-acyl glycosylamine and a mixture of several compounds originating from different competitive reactions. Among these compounds, N-benzoyl-3,5,6-tri-O-benzoyl-β-D-glucofuranosyl amine, tetra-O-benzoyl-D-glucopyranose, and octa-O-benzoyl-β-D-glucopyranosyl-(1→1)-α-D-glucopyranoside (octa-O-benzoyl-α,β-trehalose) were identified.     

Studies on imidazole derivatives and related compounds. 4. Synthesis of O-glycosides of 4-carbamoylimidazolium-5-olate

Ribosylation of trimethylsilyl derivative of 1-(4-nitrobenzyl)-5-carbamoylimidazolium-4-olate ( 5 ) with 1,2,3,5-tetra-O-acetyl-β- D -ribofuranose in the presence of stannic chloride and trimethylsilyl trifluoromethanesulfonate afforded no 5-O-glycosides but N-1 ribosylated compound ( 6 ). However, 5-O-riboside ( 7a ) and its orthoamide derivative ( 8 ) were given by glycosylation of tri-n-butylstannyl derivative of 5 with 2,3,5-tri-O-acetyl-β- D -ribofuranosyl chloride in the presence of silver trifluoromethanesulfonate. This procedure was successfully applied to other sugars and 5-O-glucuronide ( 11 ), a possible metabolite of 1 in vivo, was obtained as one of the 5-O-glycoside derivatives.