A Chiral Molecular Cage Comprising Diethynylallenes and N-Heterotriangulenes for Enantioselective Recognition

Chirality, a characteristic tool of molecular recognition in nature, is often a complement of redox active systems. Scientists, in their eagerness to mimic such sophistication, have designed numerous chiral systems based on molecular entities with cavities, such as macrocycles and cages. In an attempt to combine chirality and redox-active species, in this contribution we report the synthesis and detailed characterization of a chiral shape-persistent molecular cage based on the combination of enantiopure diethynylallenes and electron-rich bridged triarylamines, also known as N-heterotriangulenes. Its ability for chiral recognition in solution was revealed through UV/vis titrations with enantiopure helicenes.     

Diastereo‐ and Enantioselective Access to Stereotriads through a Flexible Coupling of Substituted Aldehydes and Alkenes

A flexible redox‐neutral coupling of aldehydes and alkenes enables rapid access to stereotriads starting from a single stereocenter with perfect levels of enantio‐ and diastereoselectivity under mild conditions. The versatility of the method is highlighted by the installation of heteroatoms along the tether, which enables a route to structurally diverse building blocks. The formal synthesis of (+)‐neopeltolide further demonstrates the synthetic utility of this approach.     

酯键型鹅去氧胆酸分子钳对氨基酸甲酯的手性识别

利用紫外可见光谱差光谱滴定法考察了新型鹅去氧胆酸分子钳1～6对D／L氨基酸甲酯的对映选择性识别性能。结果表明,分子钳1～6对所考察的氨基酸甲酯均具有识别能力,其对D-氨基酸甲酯的识别优于对L-氨基酸甲酯的识别。受体与底物间的大小、形状匹配,微环境效应等对识别性能均有重要影响。识别作用的主要推动力来自受体与底物之间的互补氢键,受体与底物芳环之间的π-π堆叠作用等非共价键作用力的协同作用。     

脱氧胆酸类分子钳对氨基酸甲酯的手性识别

紫外光谱法;脱氧胆酸类分子钳对氨基酸甲酯的手性识别     

Molecular Recognition of Natural and Non-Natural Substrates by Cellodextrin Phosphorylase from Ruminiclostridium Thermocellum Investigated by NMR Spectroscopy

β-1→4-Glucan polysaccharides like cellulose, derivatives and analogues, are attracting attention due to their unique physicochemical properties, as ideal candidates for many different applications in biotechnology. Access to these polysaccharides with a high level of purity at scale is still challenging, and eco-friendly alternatives by using enzymes in vitro are highly desirable. One prominent candidate enzyme is cellodextrin phosphorylase (CDP) from Ruminiclostridium thermocellum, which is able to yield cellulose oligomers from short cellodextrins and α-d -glucose 1-phosphate (Glc-1-P) as substrates. Remarkably, its broad specificity towards donors and acceptors allows the generation of highly diverse cellulose-based structures to produce novel materials. However, to fully exploit this CDP broad specificity, a detailed understanding of the molecular recognition of substrates by this enzyme in solution is needed. Herein, we provide a detailed investigation of the molecular recognition of ligands by CDP in solution by saturation transfer difference (STD) NMR spectroscopy, tr-NOESY and protein-ligand docking. Our results, discussed in the context of previous reaction kinetics data in the literature, allow a better understanding of the structural basis of the broad binding specificity of this biotechnologically relevant enzyme.     

Molecular Recognition Based on Membrane Potential Changes Induced by Host–Guest Complexation with Inorganic and Organic Guests

Guest-induced changes in membrane potentials are one of the representative modes of electrochemical signal transduction by molecular recognition at the interface of an organic membrane and an aqueous solution. Recent approaches based on synthetic hosts capable of effecting membrane potential changes by host–guest complexation with inorganic and organic guests are described. Although the studies in this area have mainly been aimed at inorganic cations as the target guests, recent approaches for recognition of inorganic anions and further organic guests are also documented. Highly selective changes in membrane potentials can be achieved for inorganic cations by sophisticated design of crown ethers and related compounds. Hosts with complementary charge(s) or multiple hydrogen bonding sites are effective for the recognition of inorganic anions and also of the polar moieties of organic ions. On the other hand, the recognition of nonpolar moieties of organic guests can be achieved by inclusion into well-defined cavities of host molecules. Quaternary onium and protonated amine salts are recently found to be capable of effecting membrane potential changes by complexation with neutral phenolic guests.     

Functionally Rigid and Degenerate Molecular Shuttles

The preparation and dynamic behavior of two functionally rigid and degenerate [2]rotaxanes ( 1⋅ 4 PF₆ and 2⋅ 4 PF₆) in which a π-electron deficient tetracationic cyclophane, cyclobis(paraquat-p-phenylene) (CBPQT⁴⁺) ring, shuttles back and forth between two π-electron-rich naphthalene (NP) stations by making the passage along an ethynyl-phenylene-(PH)-ethynyl or butadiyne rod, are described. The [2]rotaxanes were synthesized by using the clipping approach to template-directed synthesis, and were characterized by NMR spectroscopic and mass spectrometric analyses. ¹H NMR spectra of both [2]rotaxanes show evidence for the formation of mechanically interlocked structures, resulting in the upfield shifts of the resonances for key protons on the dumbbell-shaped components. In particular, the signals for the peri protons on the NP units in the dumbbell-shaped components experienced significant upfield shifts at low temperatures, just as has been observed in the flexible [2]rotaxanes. Interestingly, the resonances for the same protons did not exhibit a significant upfield shift at 298 K, but rather only a modest shift. This phenomenon arises from the much reduced binding of the ethynyl-NP unit compared to the 1,5-dioxy-NP unit. This effect, in turn, increases the shuttling rate when compared to the 1,5-dioxy-NP-based rotaxane systems investigated previously. The kinetic and thermodynamic data of the shuttling behavior of the CBPQT⁴⁺ ring between the NP units were obtained by variable-temperature NMR spectroscopy and using the coalescence method to calculate the free energies of activation (ΔG_c^≠) of 9.6 and 10.3 kcal mol⁻¹ for 1⋅ 4 PF₆ and 2⋅ 4 PF₆, respectively, probed by using the rotaxane's α-bipyridinium protons. The solid-state structure of the free dumbbell-shaped compound ( 3 ) shows the fully rigid ethynyl-PH-ethynyl linker with a length (8.1 Å) twice as long as that (3.8 Å) of the butadiyne linker. Full-atomistic simulations were carried out with the DREIDING force field (FF) to probe the degenerate molecular shuttling processes, and afforded shuttling energy barriers (ΔG^≠=10.4 kcal mol⁻¹ for 1⋅ 4 PF₆ and 2⋅ 4 PF₆) that are in good agreement with the experimental values (ΔG_c^≠=9.6 and 10.3 kcal mol⁻¹ for 1⋅ 4 PF₆ and 2⋅ 4 PF₆, respectively, probed by using their α-bipyridinium protons).     

Supramolecular Adhesives to Hard Surfaces: Adhesion Between Host Hydrogels and Guest Glass Substrates Through Molecular Recognition

Supramolecular materials based on host–guest interactions should exhibit high selectivity and external stimuli‐responsiveness. Among various stimuli, redox and photo stimuli are useful for its wide application. An external stimuli‐responsive adhesive system between CD host‐gels (CD gels) and guest molecules modified glass substrates (guest Sub) is focused. Here, the selective adhesion between host gels and guest substrates where adhesion depends on molecular complementarity is reported. Initially, it is thought that adhesion of a gel material onto a hard material might be difficult unless many guest molecules modified linear polymers immobilize on the surface of hard materials. However, reversible adhesion of the CD gels is observed by dissociating and re‐forming inclusion complex in response to redox and photo stimuli.

     

Enantioselective Inclusion Complexation of N‐Nitrosopiperidines by Steroidal Bile Acids

N ‐nitrosamines , whose chirality is solely due to hindered rotation about the N−N bond, are enantioselectively enclathrated by the crystal host matrices of cholic or deoxycholic acid, as evidenced by X‐ray crystallography (see structure in picture) and CD spectra.     

Specificity of Furanoside–Protein Recognition through Antibody Engineering and Molecular Modeling

Recognition of furanosides (five‐membered ring sugars) by proteins plays important roles in host–pathogen interactions. In comparison to their six‐membered ring counterparts (pyranosides), detailed studies of the molecular motifs involved in the recognition of furanosides by proteins are scarce. Here the first in‐depth molecular characterization of a furanoside–protein interaction system, between an antibody (CS‐35) and cell wall polysaccharides of mycobacteria, including the organism responsible for tuberculosis is reported. The approach was centered on the generation of the single chain variable fragment of CS‐35 and a rational library of its mutants. Investigating the interaction from various aspects revealed the structural motifs that govern the interaction, as well as the relative contribution of molecular forces involved in the recognition. The specificity of the recognition was shown to originate mainly from multiple CH–π interactions and, to a lesser degree, hydrogen bonds formed in critical distances and geometries.     

Dynamic Interfacial Adhesion through Cucurbit[n]uril Molecular Recognition

Supramolecular building blocks, such as cucurbit[n]uril (CB[n])‐based host–guest complexes, have been extensively studied at the nano‐ and microscale as adhesion promoters. Herein, we exploit a new class of CB[n]‐threaded highly branched polyrotaxanes (HBP‐CB[n]) as aqueous adhesives to macroscopically bond two wet surfaces, including biological tissue, through the formation of CB[8] heteroternary complexes. The dynamic nature of these complexes gives rise to adhesion with remarkable toughness, displaying recovery and reversible adhesion upon mechanical failure at the interface. Incorporation of functional guests, such as azobenzene moieties, allows for stimuli‐activated on‐demand adhesion/de‐adhesion. Macroscopic interfacial adhesion through dynamic host–guest molecular recognition represents an innovative strategy for designing the next generation of functional interfaces, biomedical devices, tissue adhesives, and wound dressings.     

多胺修饰β-环糊精及其铜配合物对几种模型底物的分子识别

用荧光和紫外光谱滴定技术分别测定了β－环糊精（1）、单-[6-(乙二胺基）－6－脱氧]-β－环糊精(2)，单-[6-(二乙烯三胺基）－6－脱氧]-β－环糊精(3)、单-[6-(三乙烯四胺基）－6－脱氧]-β－环糊精(4)及其相应的铜配合物（5，6，7）在25℃，pH为7．2和2．0的缓冲溶液中，与几种染料分子作为模型底物形成超分子配合物的稳定常数。结果表明，环糊精和修饰环糊精均使客体RhB的荧光强度下降，而使其它客体分子的荧光强度增强。与母体环糊精相比，铜键合修饰β－环糊精和修饰环糊精质子化可以增强主客体间的静电相互作用，从而提高对一些底物的键合能力。从主客体间的尺寸与形状关系讨论了主体（1－7）对染料分子识别的机理。     

Development of Enantioselective Fluorescent Sensors for Chiral Recognition

Novel chiral compounds have been synthesized for the enantioselective fluorescent recognition of alpha-hydroxycarboxylic acids and amino acids. By introducing dendritic branches to the chiral receptor units, the fluorescence signals of the receptors are significantly amplified because of the light-harvesting effect of the dendritic structure. This has greatly increased the sensitivity of the sensors in the fluorescent recognition. Highly enantioselective fluorescent responses have also been ac…     

A Taco Complex Derived from a Bis-Crown Ether Capable of Executing Molecular Logic Operation through Reversible Complexation

As learned from natural systems, self-assembly and self-sorting help in interconnecting different molecular logic gates and thus achieve high-level logic functions. In this context, demonstration of important logic operations using changes in optical responses due to the formation of molecular assemblies is even more desirable for the construction of a molecular computer. Synthesis of an appropriate divalent as well as a luminescent crown ether based host 1 and paraquat derivatives, 2(PF(6))(2) and 3(PF(6))(2), as guests helped in demonstrating a reversible [3](taco complex) (1·{2(PF(6))(2)}(2) or 1·{3(PF(6))(2)}(2)) formation in nonpolar solvent. Detailed (1)H NMR studies revealed that two paraquat units were bound cooperatively by the two crown units in 1. Because of preorganization, the flexible host molecule 1 adopts a folded conformation, where each of two paraquat units remain sandwiched between the two aromatic units of each folded crown ether moiety in 1. Disassembly of the "taco" complex in the presence of KPF(6) and reassembly on subsequent addition of DB18C6 was initially demonstrated by (1)H NMR spectral studies, which were subsequently corroborated through luminescence spectral studies. Further, luminescence spectral responses as output signals with appropriate and two independent molecular inputs could be correlated to demonstrate basic logic operation like OR and YES gates, while the results of the three molecular inputs could be utilized to demonstrate important logic operation like an INHIBIT gate.     

Anion Coreceptor Molecules. Linear Molecular Recognition in the Selective Binding of Dicarboxylate Substrates by Ditopic Polyammonium Macrocycles

Three macrocyclic hexaamines 1 , 2 , and 4 , and the acyclic tetraamine 5 and hexaamine 6 have been synthesized. The hexaamines 1 , 2 , and 4 are ditopic coreceptor molecules containing two triamine subunits which may bind anionic substrates when protonated. The stability constants of the complexes between the protonated forms of the macrocyclic polyamines and terminal dicarboxylates ^?O₂C?(CH₂)_m- CO₂^? as well as amino-acid and dipeptide dicarboxylates have been determined by pH-metric measurements. Around neutral pH, 1 and 2 give mainly complexes of the fully protonated species 1 ·6H⁺ and 2 ·6H⁺, whereas 4 yields predominantly complexes of 4 ·5H⁺ and 4 ·4H⁺. The stability sequences of the complexes formed indicate preferential binding of the dianionic substrates whose length is compatible with the separation of the triammonium binding subunits in the protonated receptor molecules 1 , 2 , and 4 . This selectivity pattern corresponds to a process of linear molecular recognition based on ditopic binding between the two ammonium subunits of the coreceptor and the terminal carboxylates of the substrate of complementary length. The complexes of the acyclic ligands 5 and 6 are much weaker and much less selective, indicating a marked macrocyclic effect on both stability and selectivity of binding, i.e. on recognition.     

Lipid Switches: Stimuli-Responsive Liposomes through Conformational Isomerism Driven by Molecular Recognition

Advancements in the field of liposomal drug carriers have culminated in greatly improved delivery properties. An important aspect of this work entails development of designer liposomes for release of contents triggered by environmental changes. The majority of these systems are driven by chemical reactions in the presence of different stimuli. However, a promising new paradigm instead focuses on molecular recognition events as the impetus for content release. In certain cases, these platforms exploit synthetic lipid switches designed to undergo conformational changes upon binding to target ions or molecules that perturb membrane assembly, thereby triggering cargo release. Examples of this approach reported thus far showcase how rational design of lipid switches can result in dramatic changes in lipid assembly properties. These strategies show great promise for opening up new pathophysiological stimuli that can be harnessed for programmed content release in drug delivery applications.     

Computational Design and Fabrication of Enantioselective Recognition Sorbents for L-phenylalanine Benzyl Ester on Multiwalled Carbon Nanotubes Using Molecular Imprinting Technology

Computational strategies have been employed to investigate the influence of the nature of monomers and cross-linker in order to design three dimensional imprinted polymers with selective recognition sites for L-phenylalanine benzyl ester(L-PABE) molecule.Here, computational chemistry methods were applied to screen the molar quantity of functional monomers that interact with one mole of the template molecule. Effects of the nature of functional monomer, cross-linker, and molar ratio were determined computationally using density functional calculations with B3LYP functional and generic 6-31G basis set. Methacrylic acid(MAA) and ethylene glycol dimethacrylate(EGDMA) were used as the functional monomer and crosslinking agent, respectively. L-PABE imprinted polymer layered on multiwalled carbon nanotube(MWCNT) and conventional bulk MIP were synthesised and characterized as well. To investigate the influence of pre-organization of binding sites on the selectivity of L-PABE, respective non-imprinted polymers were also synthesised.MWCNT-MIPs and MIPs exhibited the highest adsorption capacity towards L-PABE. The synthesized polymers revealed characteristic adsorption features and selectivity towards L-PABE in comparison with those of its enantiomer analogues.