Resolving overlap in two-dimensional NMR spectra: nuclear Overhauser effects in a polysaccharide

Overlapping resonances in the two-dimensional nuclear Overhauser (NOESY) spectrum of the O-antigenic polysaccharide from Escherichia coli O147 have been resolved by recording a tilted projection of a three-dimensional NOESY-HSQC spectrum, where the carbon-13 and proton evolutions are linked together. Through the introduction of small contributions from the appropriate carbon-13 shifts, a cluster of five unresolved proton peaks is separated into its components without the need to perform the full three-dimensional measurement, a time saving of at least an order of magnitude.     

Indirect negative nuclear Overhauser effects: Observation and applications

Direct positive and indirect negative NOEs can often be observed in the same molecule, providing a method for establishing otherwise inaccessible connectivities in complex spectra and an effective probe of conformation in solution.     

Assignment of the structure of dihydrodaphnine diacetate by nuclear Overhauser effect difference spectroscopy

The structure of the title compound has been resolved using a recent pulsed nmr difference technique to measure small nuclear Overhauser effects between aromatic protons and O- and N-methyl groups.     

Determination of vinyl orientation of mouse neuroglobin by 2D nuclear Overhauser spectroscopy

1H NMR has been used to determine the 2-,4-vinyl orientation of heme active site from oxidized mouse neuroglobin (mNgb).The NOEs between 3-methyl and Hα, Hβ of 2-vinyl, together with the NOEs between 5-methyl and Hα, Hβ of 4-vinyl, allowed the unambiguous determination of trans and cis orientations for the 2- and 4-vinyl groups in the mNgb, respectively.     

NMR diffusion and nuclear Overhauser investigation of the hydration properties of thymine: influence of the methyl group

The absence of preferential hydration in thymine and its lowest water accessibility with respect to uracil were evidenced by NMR diffusion and HOESY experiments; the hydration differences observed between these pyrimidine bases were attributed to the electronic rather than steric properties of the methyl group.     

Two-dimensional nuclear Overhauser enhancement NMR experiments on pelargonidin-3-glucopyranoside, an anthocyanin of low molecular mass.

Pelargonidin-3-glucoside has been isolated from the acidified methanolic extract of strawberries (Fragaria anannassa variety Corona) by successive application of an ion-exchange resin, droplet-counter chromatography and gel filtration. The pigment in acidified methanolic solution was studied by means of the two-dimensional nuclear Overhauser enhancement NMR technique, and the sugar unit was found to be attached to the 3-position on the aglycone. At +20 degrees C the pigment was found to be in the extreme narrowing limit where the NOESY cross-peaks are negative. However, at -20 degrees C this low-mass anthocyanin could be studied in the slow motion regime where the NOESY cross-peaks are positive. With a mixing time of 0.3 s, the glucose H1"-H4" proton pair was measured in the initial cross-relaxation rate and their cross-peak volume corresponded to the H1"-H4" distance found in a 4C1 chair conformation.     

Quantitative NMR measurements in copolymers of vinylidene chloride and acrylonitrile: The effect of saturation and varying nuclear Overhauser enhancements

Spin-lattice relaxation times and nuclear Overhauser enhancements (NOE) for ¹³C nuclei in copolymers of acrylonitrile and vinylidene chloride were measured at 20.1 and 67.9 MHz. In the ? CCl₂? region of the spectrum T₁ and NOE values of the various resonances are equal within experimental error and are invariant to changes in composition. The T₁ and NOE values of the ? CCl₂? region, however, are not equal to those of the ? CH? or ? CN region. As a result compositions cannot be calculated by direct comparison of the areas in the ? CCl₂? region and either the ? CH? or the ? CN region. Discrepancies can be corrected for the ? CH? resonances by multiplication of the area by an empirical constant. A similar constant for the ? CN region is composition-dependent at 20.1 and 67.9 MHz. A chemical shift anisotropy mechanism is postulated as important for relaxation of the ? CN resonances. The overall influence of variable T₁ and NOE values on quantitative determination of polymer composition is considered.     

Nuclear charge-distribution effects on the NMR spectroscopy parameters

We present here a systematic study about the influence of the size and type of nuclear charge-distribution models (Gaussian and point-like) on the NMR spectroscopic parameters, the nuclear magnetic shielding σ and the indirect nuclear spin J-coupling. We found that relativistic effects largely enhance the nuclear charge-distribution effects (NChDE) on those parameters being them quite sensitive to the nuclear model adopted for calculations. Results for two rare gas atoms (Kr, Rn) and few molecular systems like HX, (X = Br, I, At), CH(4), SnH(4), SnIH(3), SnI(2)H(2), and PbIH(3) are presented. J-couplings are more sensitive than shieldings in both, relativistic and non-relativistic (NR) regimes. The highest effect (close to 11% of variation in relativistic calculations with that two different nuclear models) is observed for J(Pb-I) in PbIH(3). A similar effect is found for J(Pb-H) in the same molecule, close to 9%. The NChDE for σ(Sn) in SnI(4-n)H(n) with n = 1, 2 is as large as few ppm (between 3 and 8.56 ppm). For J(Sn-H) in this set of molecules, it goes from 37 Hz for SnH(4) to 54 Hz for SnI(2)H(2). Furthermore, we found that the vicinal NChDE is very small though not zero. For (1)J(Sn-H) in SnIH(3), the NChDE of iodine is close to 2 Hz (0.1%). We also studied the NChDE on the ground state electronic energies of atoms and molecules. We found that these effects are only important within the relativistic regime but not within the NR one. They are in good agreement with previous works.     

Combined use of Overhauser spectroscopy and NMR diffusion experiments for mapping the hydration structure of nucleosides: structure and dynamics of uridine in water

Complementary results from 13C intermolecular nuclear Overhauser effects (NOE), 1H-13C heteronuclear Overhauser spectroscopy (HOSEY) and 1H-NMR diffusion measurements were used for probing the structure of the first solvation shell of uridine in water. It is demonstrated that a cyclic dihydrate is formed. The two water molecules produce two hydrogen bonds with the two oxygen atoms from the pyrimidine ring and accept only one hydrogen bond from the amide proton. The dihydrate has only a short lifetime as compared with the rotational correlation time of the free nucleoside. The chemical exchange constant of the amide proton with water is then estimated by diffusion experiments. The results are consistent with previous data obtained for uracil in water and provide interesting information about water accessibility in nucleic acid bases.     

Anisotropic nuclear spin interactions for the morphology analysis of proteins in solution by NMR spectroscopy.

Determining the relative orientation of domains within a protein is an important problem in structural biology, which has been difficult to address by either X-ray crystallography or NMR. The structure of a multidomain protein in a crystal lattice can be altered by crystal packing forces, resulting in different domain arrangements from those in solution. On the other hand, conventional NMR primarily provides short-range structural information, including proton-proton distances derived from nuclear Overhauser effects (NOEs) and torsion angles through vicinal spin couplings. Thus, NMR cannot always determine the precise interdomain arrangements due to the sparsely observed spin interactions between domains. However, the weak alignment of proteins in solution has enabled a new NMR technique to determine the domain arrangement based on the different structural information, which defines the orientation of a structural unit in protein against the magnetic field. This technique relies on the anisotropic nuclear spin interactions that only occur for a molecule in a weakly aligned state. In this review, the basics of the new NMR approach are described with focusing on its application to domain orientation analysis. We also describe our recently established NMR approach using the same spin interactions, which expands the domain arrangement analysis to higher-molecular weight proteins over 100 kDa.     

A simple technique for determining nuclear quadrupole coupling constants with RAPT solid-state NMR spectroscopy

An enhanced Rotor Assisted Population Transfer (RAPT) experiment is presented and used as a simple and fast technique to measure the magnitude of the nuclear quadrupolar coupling constant of half-integer quadrupolar nuclei. The enhanced RAPT sequence consists of a train of Gaussian pulses with alternating off-resonant frequencies of +/-nuoff. Simulated and experimental results demonstrating the method are given in the case of 87Rb (spin 3/2) and 27Al (spin 5/2) nuclei. The RAPT sequence is also used to selectively suppress resonances based on their quadrupolar coupling constant.     

On the models for deuterium long-range isotope effects in13C NMR spectroscopy

The long-range deuterium isotope effects on¹³C nuclear shielding are physically not yet completely understood. Two existing models for explaining these effects, vibrational and substituent, are compared here. The vibrational model is based on the Born-Oppenheimer approximation, but it can explain only one-bond deuterium effects. To the contrary, the substituent model may explain many long-range isotope effects, but it is controversial due to the assumption of some distinct electronic properties of isotopes. We explain how long-range deuterium isotope effects may be rationalized by the subtle electronic changes induced by isotope substitution, which does not violate the Born-Oppenheimer approximation.