Modification of pyridine-3-carboxamide (nicotinamide) by radical substitution

Pyridine-3-carboxamide ( 1 ) was reacted with alkyl radicals to give mono-, di-, and tri-alkylated products. The t-butyl radical gives only 6-t-butylpyridine-3-carboxamide ( 4a ). The reactivity decreases in the order of t-butyl, isopropyl, and ethyl radicals. The product 4a reacts further with the 2-phthalimidoethyl radical to give 2- and 4-substituted products 9 and 10 , which were transformed into tetrahydronaphthyridinone derivatives 11 and 12 .     

Theoretical study of the structures and vibrational spectra of the hydrogen-bonded systems of 4-cyanophenol with N-bases

The structural and vibrational features of the hydrogen bonded complexes of 1,5,7-triazabicyclo [4.4.0] dec-5-ene (TBD) with one and two 4-CNPhOH molecules have been studied extensively by ab initio SCF/6-31G(d,p) and BLYP calculations with various basis sets: 6-31G(d,p), 6-31+G(d,p) and 6-31++G(d,p). Full geometry optimization was made for the complexes studied. The nature of the hydrogen bonding and the influence of the hydrogen bonding on the structural and vibrational characteristics of the monomers have been investigated. The corrected values of the dissociation energy for the hydrogen-bonded complexes have been calculated in order to estimate their stability. The calculated values of the dissociation energy per phenol molecule indicate that the complex: TBD: 4-CNPhOH (1:1) is more stable than the complex: TBD: 4-CNPhOH (1:2). The changes in the structural and vibrational characteristics upon hydrogen bonding depend on the strength of the hydrogen bonds. In agreement with the experiment, the calculations show that the complexation between TBD and 4-CNPhOH leads to considerably changes in the vibrational characteristics of the stretching O-H vibration. The vibrational frequency of the O-H stretching vibration is shifted to lower wave numbers upon hydrogen bonding. The predicted frequency shifts Deltanu(O-H) for the complexes--TBD: 4-CNPhOH (1:1) and TBD: 4-CNPhOH (1:2) are in the range from -190 cm(-1) to -586 cm(-1). In the same time the IR intensity of the O-H stretching vibration increases dramatically in the hydrogen-bonded complexes.     

Polarized vibrational,electron absorption and luminescence spectra of Nd(NO3)3(DMSO)4 single crystal

Infrared and Raman spectra of polycrystalline and single crystal Nd(NO₃)₃(DMSO)₄ have been measured. The molecular and crystal structure is analysed in terms of a monoclinic unit cell of C2/c symmetry. A comparison of i.r. spectra measured parallel and perpendicular to the b axis of the unit cell as well as Raman spectra for several tensor elements was used to describe the internal and external optical modes. The optical absorption and luminescence spectra of neodymium nitrate tetra dimethyl sulphoxide single crystal were recorded at 77 and 300 K between 4000–30 000 cm⁻¹. The electronic transitions were assigned to the crystal field splitting manifolds. The band intensity measurements performed for | and ⊥ b polarizations are related to Judd—Ofeld parameters and the anisotropy of these values is discussed.     

Crystal structure and vibrational spectra of pyridine-2,6-dithio-carbomethylamide

The crystal structure of Pyridine-2,6-dithio-carbomethylamide (PDTA) is described: C₉H₁₁N₃S₂, monoclinic, P2₁/c,Z=4,a=6.000 (1) Å,b=8.840 (1) Å,c=21.452 (1) Å, =105.47 (1)^o,d _x=1.47 gcm^–3. The structure was solved with direct methods and refined to a conventionalR-factor of 0.047. The molecule is nearly planar in the crystal. There are possibly weak intramolecular H-bonds between the two amide nitrogens and the pyridine nitrogen and intermolecular H-bonds between two amide nitrogens and one thioamide sulfur atom. The IR andRaman spectra ofPDTA and deuteratedPDTA are discussed.

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Kristallstruktur und Schwingungsspektren von Pyridin-2,6-dithiocarbomethylamid

Zusammenfassung Die Kristallstruktur von Pyridin-2,6-dithiocarbomethylamid (PDTA) wurde bestimmt: C₉H₁₁N₃S₂, monoklin, P2₁/c,Z=4,a=6,000 (1) Å,b=8,840 (1) Å,c=21,452 (1) Å, =105,47 (1)^o,d _x=1,47 gcm^–3. Das Phasenproblem wurde mittels direkter Methoden gelöst und die Struktur bis zu einemR-Faktor vonR=0,047 verfeinert. Das Molekül ist im Kristall nahezu planar. Das Vorliegen schwacher intramolekularer Wasserstoffbrücken zwischen den beiden Thioamid-Stickstoffatomen und dem Pyridinstickstoff sowie intermolekularer Wasserstoffbrücken zwischen Thioamid-Stickstoff- und Thioamid-Schwefelatomen wird postuliert. IR- undRaman-Spektren vonPDTA und deuteriertemPDTA werden diskutiert.

     

Ab initio study of the vibrational spectra of the hydrogen-bonded nitric acid dimer.

The changes in the vibrational characteristics characterizing the dimerization of nitric acid have been investigated by ab initio calculations at the MP2 level, with 6-31G(d,p) and 6-31 + G(d,p) basis sets, and B3LYP/6-31G(d,p) calculations. The most consistent agreement between the computed values of the frequency shifts for the planar fully symmetric structure (2A) and those experimentally observed suggests that this structure is preferred. It was established that the most sensitive to the complexation is the stretching O-H vibration. The values of the frequency shift (-306 cm(-1)) is indicative for the formation of the relatively strong hydrogen bonds. The calculations predict an increase of the infrared intensity of the stretching O-H vibration in the nitric acid dimer more than 26 times.     

Vibrational spectra and vibrational states of simple gas-phase hydrogen-bonded dimers

The article aims to outline the growth of evidence and ideas about infrared band broadening for simple, gaseous, moderately strong, hydrogen bonded dimers B…HA, to draw attention to areas in need of further development and to collect together experimental information available at the present time about vibrational states associated with such dimers. The band associated with the modified HA stretching mode, ν_s, is observed for several dimers not only to be broad, but to have sub-band structure, which is satisfactorily interpreted as arising from combination bands of ν_s with the low frequency stretch-mode ν_σ, giving a progression ν_s ± nν_σ as a result of strong anharmonic coupling. For weaker dimers with lower values of ν_σ the sub-band structure is less evident, and may appear only as shoulders, while for still weaker dimers, the sub-bands may be merged into a featureless broad band. A major factor contributing to the breadth of the individual sub-bands in the band structure is the presence of hot-bands, especially a long series based on successive excited states of the low-frequency bending mode ν_β. A link is indicated with the interpretation of band-broadening for moderately strong hydrogen-bonded complexes in the liquid state. The anharmonic coupling of ν_s and ν_σ is again a central feature but there is a new factor, namely the coupling of ν_σ through a fluctuating potential with the surroundings, which has the result that the ν_s mode rapidly loses phase coherence resulting in a broad structureless band.     

FC(O)NCS 分子振动光谱的理论研究

采用DFT(B3LYP)方法,以6-3G*为基组对FC(O)NCS的顺式和反式两种构型的几何结构,振动谐性力场和红外光谱进行了研究。B3LYP/6-31G*计算水平和大多数有机分子的一套固定标度因子进行标度。根据标度后的理论力场进行简正坐标分析得到的势能分布(PED)和红外光谱强度值对FC(O)NCS分子的顺式和反式两种构型的振动基频进行了理论归属。     

Self-assembly hydrogen-bonded supramolecular arrays from copper(II) halogenobenzoates with nicotinamide: Structure and EPR spectra

Nicotinamide was employed as a supramolecular reagent in the synthesis of six new copper(II) bromo-, iodo-, fluoro- and dibromobenzoate complexes. Structures of [Cu(2-Brbz)₂(nia)₂(H₂O)₂] (I), [Cu(2-Ibz)₂(nia)₂(H₂O)2] (II), [Cu(2-Fbz)₂(nia)₂(H₂O)₂] (III), [Cu(4-Brbz)₂(nia)₂(H₂O)₂] (IV), [Cu(3,5-Br₂bz)2(nia)₂(H₂O)2] (V), [Cu(F-Fbz)₂(nia)₂(H₂O)] · H₂O (VI) (nia = nicotinamide, 2-Brbz = 2-bromobenzoate, 4-Brbz = 4-bromobenzoate, 3,5-Br₂bz = 3,5-dibromobenzoate, 2-Ibz = 2-iodobenzoate, 2-Fbz = 2-fluorobenzoate, 4-Fbz = 4-fluorobenzoate) were determined using X-ray analysis. Compound [Cu(2-Brbz)₂(nia)₂] · 2H₂O (VII) was prepared by a new method and also characterized by X-ray powder diffraction and EPR spectroscopy. Compounds I–V are monomeric complexes with a square-bipyramidal coordination sphere around the Cu²⁺ ion. Complex VI is monomeric with coordination environment around the Cu²⁺ ion of a tetragonal-pyramid. Complexes I and VII present examples of coordination isomerism. Molecules of all compounds are connected by N—H?O and O—H?O hydrogen bonds from the NH₂ groups of nicotinamide and water molecules which create supramolecular hydrogen-bonding-coordination chains and networks.     

Theoretical study of vibrational and optical spectra of methylene-bridged oligofluorenes

We report a systematic characterization of methylene-bridged fluorene oligomers constructed of two, four, six, and eight aromatic rings using time-dependent density functional theory (TDDFT), the ab initio approximate coupled-cluster singles and doubles (CC2) method, and semiempirical spectroscopic Zerner's intermediate neglect of differential overlap method (ZINDO/S). Geometry optimizations have been performed for the ground state and for the first electronically excited state. Vertical excitations and the fluorescence transition from the lowest excited state have been calculated. Computed ground-state geometries and infrared spectra for fluorene are in good agreement with experimental results. The RI-CC2 and ZINDO/S absorption and fluorescence spectra agree very well with the available experimental data for studied fluorene oligomers and for para oligophenylenes films. On the other hand, TDDFT calculations underestimate excitation and fluorescence energies systematically for larger systems (N > 4) in comparison with the above-mentioned results. The effective conjugation length was estimated to 13-14 repeat units. The computed radiative lifetimes for the fluorene molecule show good agreement with experiment within realistic expectations. The decrease of the radiatiave fluorescence lifetime with the increase in the conjugation length has been discussed also.     

Theoretical study of the structure and vibrational spectra of the Ci(2) conformation of 18-crown-6

Optimized geometries of 18-crown-6 (18ce6) were calculated at the HF/6-31G* and B3LYP/6-31G* levels of theory for the D3d, Ci(1) and Ci(2) conformations. At the B3LYP level, the Ci(2) optimized geometry was higher in energy by 23.3 and 18.8 kcal mol(-1) than the Ci(1) and D3d optimized geometries, respectively. Harmonic force field, vibrational frequencies and IR absorption intensities were calculated at the corresponding optimized geometry at the B3LYP level for the Ci(2) conformation. Scaled Ci(2) frequencies were compared with the experimental frequencies of free 18ce6, Ci(1) conformation, and 18ce6-urea complex, Ci(2) conformation. This comparison showed possible misassignments in the fundamental vibrational frequencies of 18ce6.     

Theoretical study of molecular structure and vibrational spectra of 1,4-dihydroxyanthraquinone

Molecular structure and vibrational spectra of 1,4-dihydroxyanthraquinone (1,4-DAQ) are studied theoretically and experimentally. FT-infrared and Raman spectra of 1,4-DAQ are recorded in solid phase in regions of 4000-400 and 3500-100 cm(-1), respectively. The geometry of 1,4-DAQ is optimized by B3LYP and B3PW91 methods, and the most stable structure with C2v point group is found. The harmonic vibration frequencies, infrared intensities, and the Raman scattering activities of the compound are calculated, analyzed, and compared with experimental data. Our calculated frequencies agree well with the experimental results.     

RuN2分子结构和振动光谱的理论研究

使用钌原子相对论有效原子实势LanL2dz和密度泛函理论B3LYP方法对RuN2分子结构与分子光谱进行理论研究。结果表明RuN2分子基态为线性C∞v端配结构,基态电子态为3△,平衡几何为RRu-N=0.1910 nm,RN-1=0.1120 nm。同时首次计算给出各种稳定结构的振动频率,红外强度,拉曼活性与退极化率和偶极矩。     

Theoretical study on cation-anion interaction and vibrational spectra of 1-allyl-3-methylimidazolium-based ionic liquids

In order to deepen the understanding of the cation-anion interaction in ionic liquids, the structures of cation, anions, and cation-anion ion-pairs of 1-allyl-3-methylimidazolium-based ionic liquids are optimized using density functional theory (DFT), and their most stable geometries are discussed. The structural parameters, hydrogen bonds and interaction energies of 1-allyl-3-methylimidazolium dicyanamide ([Amim]DCA), 1-allyl-3-methylimidazolium chloride ([Amim]Cl), 1-allyl-3-methylimidazolium formate ([Amim]FmO) and 1-allyl-3-methylimidazolium acetate ([Amim]AcO) ion pairs are studied. The vibrational frequencies of [Amim]DCA and [Amim]Cl have been calculated and scaled values have been compared with experimental FT-IR and FT-Raman spectra. The complete assignments were performed on the basis of the potential energy distribution (PED) of the vibrational modes.     

An experimental and theoretical study of vibrational spectra of picolinamide, nicotinamide, and isonicotinamide

The molecular structures and vibrational spectra of the three isomers of pyridinecarboxamide (picolinamide, nicotinamide, isonicotinamide) were calculated with the Density Functional Theory (DFT) method using the B3LYP function and the 6-31++G(d,p), Z2PolX, Z3PolX basis sets. The calculations were performed by using the Gaussian98W packet program set. The total energy distributions (TED) of the vibrational modes of these molecules were calculated by using the Scale 2.0 program and the vibrational modes of the molecules were determined. The Scaled Quantum Mechanical (SQM) method was used in the scaling procedure. In the experimental part of the study, the solid phase FT-IR and Micro Raman spectra of the three isomers of pyridinecarboxamide have been recorded in the range of 4000-650 and 1200-100 cm⁻¹, respectively. The calculated wavenumbers were compared to the corresponding experimental values. As a result, the observed bands of the three isomers of pyridinecarboxamide were assigned with good accuracy.     

Theoretical prediction of vibrational spectra. The a priori scaled quantum mechanical (SQM) force field and vibrational spectra of pyrimidine

The complete harmonic force field of pyrimidine has been computed at the ab initio Hartree—Fock level using a 4–21 Gaussian basis set. In order to compensate the systematic overestimations of the force constants at the aforementioned level of quantum mechanical approximation, the theoretical force constants were empirically scaled by using nine scale factors. (The values of all these scale factors were previously determined by fitting the theoretical force field of benzene to the observed vibrational spectra of benzene.) The resulting a priori scaled quantum mechanical (SQM) force field is regarded as the most accurate and physically the most correct harmonic force field for pyrimidine. This force field was then used to predict the vibrational spectra of pyrimidine-h₄ and pyrimidine-d₄. On the basis of these a priori vibrational spectra uncertain assignments have been confidently resolved. After a few reassignments, the mean deviations between the experimental and calculated frequencies are below 9 and 18 cm⁻¹ for the non-CH stretching in-plane and the out-of-plane vibrations, respectively. Computed IR intensities are generally in agreement with experiments at a qualitative level.     

Theoretical study of the structure, stability, and infrared spectra of hydrogen-bonded complexes of N-nitrosodiethanolamine (NDELA) with water molecules

A theoretical study of the interaction between the N-nitrosodiethanolamine (NDELA) molecule and one to five water molecules was performed at the B3LYP level using a large polarized basis set. The calculated complexation energies (corrected for BSSE and ZPVE) of NDELA with one, two, three, four, and five water molecules are ?4.62 kcal/mol, ?9.83 kcal/mol, ?15.29 kcal/mol, ?21.60 kcal/mol, and ?25.10 kcal/mol respectively at the B3LYP/6-311++G** level. In all complexes studied, there are red shifts in the vibrational frequencies of the O-Hs of NDELA and water molecules along with increases in the corresponding IR intensities.     

Theoretical characterization of the gas-phase O(3)HO hydrogen-bonded complex.

We report a theoretical study on two gas-phase hydrogen-bonded complexes formed between ozone and hydroxyl radical that have relevance to atmospheric chemistry. This study was carried out by using CASSCF, CASPT2, QCISD, and CCSD(T) theoretical approaches in conjunction with the 6-311+G(2df,2p) and aug-cc-pVTZ basis sets. Both complexes have a planar structure and differ from each other in the orientation of the electronic density of the unpaired electron associated with the HO radical moiety. Our calculations predict their stabilities to be 0.87 and 0.67 kcal mol(-1), respectively, at 0 K and show the importance of anharmonic effects in computing the red shift of the HO stretch originating from the hydrogen-bonding interaction. We also report two transition states involving the movement of the HO moiety on the potential energy surfaces of these hydrogen-bonded complexes.     

Two new potential optical materials: Co(II) and Ni(II) 3-fluorobenzoate complexes with pyridine-3-carboxamide

Two new complexes, [Co(3-fba)₂(na)₂(H₂O)₂] (1) and [Ni(3-fba)₂(na)₂(H₂O)₂] (2) (where 3-fba = 3-fluorobenzoate and na?=?pyridine-3-carboxamide, nicotinamide), were synthesized and characterized using different techniques (elemental analysis, FT-IR, UV-Vis spectrophotometer, single-crystal X-ray diffraction, fluorescence spectroscopy, and TGA/DTA analysis). X-ray structural analysis revealed that 1 and 2 are isostructural and exhibit distorted octahedral coordination geometry. In each molecule, metal atoms (Co⁺² and Ni⁺²) are linked by two 3-fluorobenzoate anions, two pyridine-3-carboxamide ligands, and two water molecules per formula unit. The 3-fluorobenzoate and pyridine-3-carboxamide are monodentate through a carboxylate oxygen atom and the nitrogen atom of the pyridine ring, respectively. UV-Vis results showed that the studied complexes have absorption edges similar to semiconductor structures. Namely, 1 and 2 indicated emission behaviors around 370?nm and 361?nm, respectively.     

Theoretical study of vibrational wave-packet dynamics in electron-transfer systems

The vibrational wave-packet dynamics associated with ultrafast electron-transfer reactions in a condensed phase environment is studied. Applying the recently proposed self-consistent hybrid method to simulate the quantum dynamics of these reactions, we consider various electron-transfer systems including the spin-boson model with Debye spectral density, a reaction-coordinate model, as well as photoinduced electron-transfer reactions in a mixed valence compound. The results of the study demonstrate the interplay between electron-transfer dynamics and coherent vibrational motion of inner-sphere modes. Furthermore, the occurrence and quenching of electronic and vibrational coherence effects in electron-transfer reactions is discussed in some detail.