Thermodynamic characteristics of sorption of heterocyclic compounds m capillary gas chromatography

Dependences of sorption energies of sulfur-, oxygen-, and nitrogen-containing heterocyclic compounds on the nature of heteroatoms, structure of substituents and their position in the ring were studied. The contributions of heteroatoms, functional and alkyl groups to the energy of dispersive interaction of position isomers with nonpolar stationary phases were determined for imidazoles, piperidines, morpholines, thiomorpholines, dioxalanes, oxathiolanes, dithiolanes, thiophenes, and furans. The nonequivalence of contributions of the same substituents to the sorption energy of each of the heterocyclic compounds, depending on the nature of the heteroatom and position of the substituent, was shown. The obtained values of contributions of heteroatoms and substituents can be used for apriori calculation of retention indices of position isomers of five- and six-membered heterocycles containing one or two heteroatoms in the ring.Translated from lzvestiya Akademii Nauk. Seriya Khimicheskaya, No. 8, pp. 2033–2038, August, 1996.     

Relationship between NMR shielding and heme binding strength for a series of 7-substituted quinolines

Chemical shielding tensors are calculated for the carbons in a series of 4-aminoquinolines with different substituents at the 7-position. The sigma(11) component is used as a measure of the relative pi-electron density at each carbon. By comparing the pi-electron density at each carbon with the log K of binding to heme (Kaschula et al. J. Med. Chem. 2002, 45, 3531), the drug-heme association is found to increase with increasing pi-electron density at the carbons meta to the substituent and with decreasing pi-electron density at the carbons ortho and para to the substituent. The greatest change in pi-electron density is at the ortho carbons, and log K increases with a decrease in pi-electron density on the ring containing the substituent, which corresponds to an increase in the pi-dipole between the two rings. An examination of the solution structures of the pi-pi complexes formed by amodiaquine and quinine with heme (Leed et al. Biochemistry 2002, 41, 10245. de Dios et al. Inorg. Chem. 2004, 43, 8078) shows that the pi-dipoles in each drug and in the porphyrin ring of heme may be paired. The chloro-substituted compound has an association constant that is an order of magnitude higher than the other compounds in the series, but the pi-electron density at the ring containing the substituent is not correspondingly low. This lack of correlation indicates that the Cl-substituted compound may be binding to heme in a manner that differs from the other compounds in the series.     

NHC-catalyzed covalent activation of heteroatoms for enantioselective reactions

Covalent activation of heteroatoms enabled by N-heterocyclic carbene (NHC) organic catalysts for enantioselective reactions is evaluated and summarized in this review. To date, sulfur, oxygen, and nitrogen atoms can be activated in this manner to react with another substrate to construct chiral carbon–heteroatom bonds with high optical enantioselectivities. The activation starts with addition of an NHC catalyst to the carbonyl moiety (aldehyde or imine) of substrates that contain heteroatoms. The key in this approach is the formation of intermediates covalently bound to the NHC catalyst, in which the heteroatom of the substrate is activated as a nucleophilic reactive site.

Covalent activation of heteroatoms enabled by N-heterocyclic carbene (NHC) organic catalysts for enantioselective reactions is evaluated and summarized in this review.     

杂原子对Y沸石液固相类质同晶取代规律探讨

用NH~4BF~4,(NH~4)~3ZrF~7,(NH~4)~2Tif~6,(NH~4)~3FeF~6和CrF~3,3NH~4F等溶液为取代剂,对Y沸石实行液固相类质同晶取代,除了B以外, 其它金属元素均能代入沸石骨架,它们的取代程度为Fe>Ti>Cr≈Zr.采用XRD,IR和DTA 等手段对取代产物进行表征,证实杂原子已成为骨架元素.由液固相类质同晶取代机理出发, 对影响杂原子取代程度的主要因素进行了探讨,提出由杂原子的离子半径.含氟配合物累积稳定常数. 阳离子水解平衡常数和水解产物聚合平衡常数可以预测各种杂原子的取代效果.     

Aromaticity and conformational flexibility of five-membered monoheterocycles: pyrrole-like and thiophene-like structures

Aromaticity and conformational flexibility of the series of five-membered monoheterocycles with group 14–16 heteroatoms, having one or two lone pairs, were studied with ab initio methods using NICS, ASE and I ₅ indices. For non-planar molecules like phosphole, aromaticity of their planar transition states was also studied, and a special modification of ASE index was proposed to that end. It was found that the presence of two lone pairs is generally preferable for aromaticity of all heterocycles except CPD and silolyl dianions. Heterocycles with group 16 heteroatoms have consistently lower aromaticity compared to other groups. A lot of structures should be classified as moderate aromatic and non-aromatic. Energies of out-of-plane deformation do not correlate with other indices studied, but reveal the same qualitative trends. Generally, aromaticity of five-membered monoheterocycles depends strongly on both heteroatom type and number of lone pairs on it.     

Aromaticity in heterocyclic analogues of benzene: comprehensive analysis of structural aspects, electron delocalization and magnetic characteristics

The degree of aromaticity of six-membered monoheterocycles with IV-VI group heteroatoms (C(6)H(5)X, where X = SiH, GeH, N, P, As, O(+), S(+), Se(+)) was analyzed using the results of ab initio calculations at the MP2/cc-pvtz level. Values of common aromaticity indices including those based on electronic delocalization properties, structural-dynamic features and magnetic properties all indicate high aromaticity of all considered heterocycles. A decrease in aromaticity is observed with increasing atomic number of the heteroatom, except in the case of the pyrylium cation. However, not all types of indices or even different indices within the same type correlate well among each other. Ring currents have been obtained at the HF/cc-pvdz level using the ipsocentric formulation. Ring current maps indicate that in the case of cationic heterocycles the ring current persists in all molecules under consideration. The different conclusions reached depending on the type of index used are a manifestation of the fact that when not dealing with hydrocarbons, aromaticity is ill-defined. One should always express explicitly which property of the molecules is considered to establish a degree of "aromaticity".     

Dependence of the reactivity of five-membered aromatic heterocycles on their structure. 1. Effect of the number,type, and position of nitrogen atoms on the proton affinity of aminoazoles

The proton affinities (PA) of 16 aminoazoles were calculated by the MNDO and ab initio methods. It was assumed that the effect of the heteroatom on the PA is determined by its type and position and does not depend on the presence of other heteroatoms in the ring. Quantitative characteristics reflecting the effect of heteroatoms at various positions on the PA were obtained by the method of least squares.Translated from Khimiya Geterotsiklicheskikh Soedinenii, No. 1, pp. 54–58, January, 1987.     

Density functional theoretical investigation of the aromatic nature of BN substituted benzene and four ring polyaromatic hydrocarbons

We have studied the topological and local aromaticity of BN-substituted benzene, pyrene, chrysene, triphenylene and tetracene molecules. The nucleus-independent chemical shielding (NICS), harmonic oscillator model of aromaticity (HOMA), para-delocalization index (PDI) and aromatic fluctuation index (FLU) have been calculated to quantify aromaticity in terms of magnetic and structural criteria. We find that charge separations due to the introduction of heteroatoms largely affect both the local and topological aromaticity of these molecules. Our studies show that the presence of any kind of heteroatom in the ring not only reduces the local delocalization in the six membered ring, but also affects strongly the topological aromaticity. In fact, the relative orders of the topological and local aromaticity depend strongly on the position of the heteroatoms in the structure. In general, more ring shared BN containing molecules are less aromatic than the less ring shared BN molecules. In addition our results provide evidence that the structural stability of the molecule is dominated by the σ bond rather than the π bond.     

Solution-phase synthesis of heteroatom-substituted carbon scaffolds for hydrogen storage

This paper reports a bottom-up solution-phase process for the preparation of pristine and heteroatom (boron, phosphorus, or nitrogen)-substituted carbon scaffolds that show good surface areas and enhanced hydrogen adsorption capacities and binding energies. The synthesis method involves heating chlorine-containing small organic molecules with metallic sodium at reflux in high-boiling solvents. For heteroatom incorporation, heteroatomic electrophiles are added to the reaction mixture. Under the reaction conditions, micrometer-sized graphitic sheets assembled by 3-5 nm-sized domains of graphene nanoflakes are formed, and when they are heteroatom-substituted, the heteroatoms are uniformly distributed. The substituted carbon scaffolds enriched with heteroatoms (boron ～7.3%, phosphorus ～8.1%, and nitrogen ～28.1%) had surface areas as high as 900 m(2) g(-1) and enhanced reversible hydrogen physisorption capacities relative to pristine carbon scaffolds or common carbonaceous materials. In addition, the binding energies of the substituted carbon scaffolds, as measured by adsorption isotherms, were 8.6, 8.3, and 5.6 kJ mol(-1) for the boron-, phosphorus-, and nitrogen-enriched carbon scaffolds, respectively.     

Predicting the Outcome of Photocyclisation Reactions: A Joint Experimental and Computational Investigation

Photochemical oxidative cyclodehydrogenation reactions are a versatile class of aromatic ring‐forming reactions. They are tolerant to functional group substitution and heteroatom inclusion, so can be used to form a diverse range of extended polyaromatic systems by fusing existing ring substituents. However, despite their undoubted synthetic utility, there are no existing models—computational or heuristic—that predict the outcome of photocyclisation reactions across all possible classes of reactants. This can be traced back to the fact that “negative” results are rarely published in the synthetic literature and the lack of a general conceptual framework for understanding how photoexcitation affects reactivity. In this work, we address both of these issues. We present experimental data for a series of aromatically substituted pyrroles and indoles, and show that quantifying induced atomic forces upon photoexcitation provides a powerful predictive model for determining whether a given reactant will photoplanarise and hence proceed to photocyclised product under appropriate reaction conditions. The propensity of a molecule to photoplanarise is related to localised changes in charge distribution around the putative forming ring upon photoexcitation. This is promoted by asymmetry in molecular structures and/or charge distributions, inclusion of heteroatoms and ethylene bridging and well‐separated or isolated photocyclisation sites.     

DPD Molecular Simulations of Asphaltene Adsorption on Hydrophilic Substrates: Effects of Polar Groups and Solubility

Adsorption of asphaltenes onto a polar substrate (e.g., a mineral) was modeled with dissipative particle dynamics (DPD) simulations, using continental asphaltene models. The adsorption mechanisms in 10–20% wt, of asphaltene in toluene/ heptane solutions were studied (well above the solubility limit). The structure in the adsorbed layer was highly sensitive to the presence of polar groups in the alkyl side chains and heteroatom content in the aromatic ring structure. Four types of asphaltene models were used: completely apolar (zero adsorption), apolar chains and polar heteroatoms, polar chains and no heteroatoms, and polar chains and heteroatoms (maximum adsorption). One hundred asphaltene monomers were distributed homogeneously in the solvent initially, in a ～(10 nm)³ domain.

Asphaltene monomers adsorbed irreversibly on the substrate via the polar group in the side chains, resulting in an average perpendicular orientation of the aromatic rings relative to the substrate. More frequent π–π stacking of the aromatic rings occurred for less solubility (more heptane), as in aggregates. With apolar side chains, only the heteroatoms in the aromatic ring structure had affinity to the substrate, but the ring plane did not have any preferred direction.

An important finding is that the aromatic ring assemblies “shielded” the substrate and polar groups that were anchored to the substrate, resulting in an effective non-polar surface layer seen by asphaltenes in the bulk, leading to much lower adsorption probability of the remaining asphaltenes. This “adsorption termination” effect leads to mono-layer formation. Continued adsorption with multilayering and reversible nanoaggregate adsorption occurred when both side chains in the model asphaltene (located on opposite sides of the aromatic sheet) contained polar groups, with a higher probability of exposing further polar groups to the bulk asphaltene. The general conclusion is that the number and position of the polar groups in side chains determine to a large degree the adsorption and aggregation behavior/efficiency of (continental) asphaltenes, in line with experimental evidence. The heteroatoms in the aromatic ring structure plays a more passive role in this context, only by providing organization via more π–π stacking in the adsorbed layer, and in aggregates.     

Stereoselective formal [3 + 3] cycloaddition approach to cis-1-azadecalins and synthesis of (-)-4a,8a-diepi-pumiliotoxin C. evidence for the first highly stereoselective 6pi-electron electrocyclic ring closures of 1-azatrienes

Evidence is described here to support that a highly stereoselective 6pi-electron electrocyclic ring closure of 1-azatrienes is a key step in formal [3 + 3] cycloaddition or annulation reactions of chiral vinylogous amides with alpha,beta-unsaturated iminium salts. This would represent the first highly stereoselective 6pi-electron electrocyclic ring closure of 1-azatrienes. We have also unambiguously demonstrated that these specific ring closures are reversible, leading to the major diastereomer that is also thermodynamically more stable, and that a rotation preference likely also plays a role. A synthetic application is illustrated here to stereoselectively transform the resulting dihydropyridines to cis-1-azadecalins with unique anti relative stereochemistry at C2 and C2a, leading to synthesis of epi isomers of (-)-pumiliotoxin C.     

Studies of selenides of thiophene and furan series—V: Mass spectra of some thiophene,furan and selenophene derivatives

Mass spectra of some selenides, sulphides and ethers of furan, thiophene and selenophene series are described. A new fragmentation reaction, consisting in splitting off alkyl, insertion of heteroatom in the cycle and loss of one of heteroatoms as C?X, is discussed in detail.     

Base-catalyzed hydrogen-deuterium exchange in some 5- and 6-substituted benzothiazoles. Activity of the sulphur and nitrogen heteroatoms in the transmission of the substituent effects

The rates of base-catalyzed hydrogen-deuterium exchange at C-2 in some 6-substituted benzothiazoles were studied and compared with the analogous values pertinent to some 5-substituted benzothiazoles, reported in a previous paper. The simple Hammett equation was found not to allow a good interpretation of the experimental data. However, a good agreement was obtained by the application of the Hammett-Jaffé equations. From these calculations, it was concluded that the sulphur and the nitrogen heteroatoms of the thiazole ring have, in these reactions, a very similar activity in the transmission of the substituent effects from the benzo ring at C-2 of the thiazole ring. Therefore, while in other reactions only the nitrogen heteroatom is active, in these reactions a considerable stabilization of the α-carbanion is clearly shown also by the sulphur heteroatom.     

Bonding in negative ions: the role of d orbitals in the heavy analogues of pyridine and furan radical anions

We have used a potential wall method to investigate the role of d orbitals in the a(2) singly-occupied molecular orbitals of (2)A(2) negative ion states of two molecular series: pyridine, phosphabenzene, arsabenzene, stibabenzene (C(5)H(5)X, X = {N, P, As, Sb}), and furan, thiophene, selenophene, tellurophene (C(4)H(4)X, X = {O, S, Se, Te}). Unlike for the lower lying doubly occupied orbitals, heteroatom d-carbon p in-phase (bonding) interactions in these a(2) orbitals are clearly identified and explain the 0.5 eV stabilization of the (2)A(2) radical anion state in those compounds where the heteroatoms have d orbitals in the valence shell, compared to compounds where d orbitals are missing in the valence shell of the heteroatoms. The performance of both the potential wall approach and the approximate expression of Tozer and De Proft for calculating negative electron affinities has been also investigated, through a comparison with results obtained using electron-transmission spectroscopy experiments.     

Chemical graph theory and n-center electron delocalization indices: a study on polycyclic aromatic hydrocarbons

Relations between aromaticity indices derived from chemical graph theory and those based on 6-center electron delocalization are investigated for a series of polybenzenoid hydrocarbons. Aromatic stabilization obtained by means of the effective scaled electron delocalization is highly correlated to the resonance energy, RE, obtained both from SCF MO calculations and conjugated ring circuits model. Local aromaticity of benzene rings is discussed using two different criteria, in one of them aromaticity is just given by the cyclic pi-electron conjugation of the ring, whereas terms involving more than one ring are also considered in the other one. Indices derived from chemical graph theory and those obtained from the 6-center electron delocalization give rise to the same local aromaticity. Moreover, 6-center electron delocalization provides more quantitative information.