Photofragmentation of Isoleucine by Vacuum Ultraviolet Photoionization

Vacuum ultraviolet photon-induced ionization and dissociation of isoleucine are investi-gated with synchrotron radiation photoionization mass spectroscopy and theoretical cal-culations. The main fragment ions at m/z=86, 75, 74, 69, 57, 46, 45, 44, 41, 30, 28, and 18 from isoleucine are observed in the mass spectrum at the photon energy of 13 eV. From the photoionization e±ciency curves, appearance energies for the principal fragment ions C₅H₁₂N⁺ (m/z=86)、C₂H₅NO₄⁺ (m/z=75)、C₅H₉⁺ (m/z=69)、C₄H₉⁺(m/z=57), and CH₄N⁺(m/z=30) are determined to be 8.84±0.07, 9.25±0.06, 10.20±0.12, 9.25±0.10, and 11.05±0.07 eV, respectively, and possible formation pathways are established in detail by the calculations at the B3LYP/6-31++G(d, p) levels. These proposed channels include simple bond cleavage reactions as well as reactions involving intermediates and transition structures. The experimental and computational appearance energies or barriers are in good agreement.     

Photoionization and Dissociation Study of 2-Methyl-2-propen-1-ol: Experimental and Theoretical Insights

The photoionization and dissociation of 2-methyl-2-propen-1-ol (MPO) have been investigated by using molecular beam experimental apparatus with tunable vacuum ultravioletsynchrotron radiation in the photon energy region of 8.0-15.5 eV. The photoionization efficiency (PIE) curves for molecule ion and fragment ions: C₄H₈O⁺、C₄H₇O⁺、C₃H₅O⁺、C₄H₇⁺、C₄H₆⁺、C₄H₅⁺、C₂H₄O⁺、C₂H₃O⁺、C₃H₆⁺、C₃H₅⁺、C₃H₃⁺、CH₃O⁺、CHO⁺ have been measured, and the ionization energy (IE) and the appearance energies (AEs) of the fragment ions have been obtained. The stable species and the first order saddle points have been calculated on the CCSD(T)/cc-pvTZ//B3LYP/6-31+G(d,p) level. With combination of theoretical and experimental results, the dissociative photoionization pathways of 2-methyl-2-propen-1-ol are proposed. Hydrogen migrations within the molecule are the dominant processes in most of the fragmentation pathways of MPO.     

VUV Photoionization and Dissociation of Tyramine and Dopamine: the Joint Experimental and Theoretical Studies

Photon induced dissociation investigations of neutral tyramine and dopamine are carried out with synchrotron vacuum ultraviolet photoionization mass spectrometry and theoretical calculations. At low photon energy, only molecular ions are measured by virtue of near-threshold photoionization. While increasing photon energy to 11.7 eV or more, four distinct fragment ions are obtained for tyramine and dopamine, respectively. Besides, the ioniza-tion energies of tyramine and dopamine are determined to be 7.98±0.05 and 7.67±0.05 eV by measuring the photoionization efficiency curves of corresponding molecular ions. With help of density function theory calculations, the detailed fragmentation pathways are es-tablished as well. These two molecular cations have similar aminoethyl group elimination pathways, C₇H₈O₂^+·(m/z=124) and C₇H₈O^+·(m/z=108) are supposed to be generated by the McLafferty rearrangement via γ-hydrogen (γ-H) shift inducing β-fission. And CH₂NH₂⁺ is proposed to derive from the direct fission of C7-C8 bond. Besides, the McLafferty rear-rangement and the C7-C8 bond fission are validated to be dominant dissociation pathways for tyramine and dopamine cations.     

Theoretical Study of Isoprene Dissociative Photoionization

Theoretical calculations have been carried out to investigate the possible dissociation channels of isoprene. We focus on the major fragment ions of C₅H₇⁺,C₅H₅⁺,C₄H₅⁺,C₃H₆⁺,C₃H₅⁺,C₃H₄⁺,C₃H₃⁺ and C₂H₃⁺, which were observed experimentally from the isoprene dissociative photoionization. The energy calculations were performed with the CBS-QB3 model. All the geometries and energies of the fragments, intermediates and transition states involved in the dissociations channels were determined. Finally, the mechanisms of the dissociation pathways were discussed on the comparison of theoretical and experimental results.     

Vacuum ultraviolet photoionization mass spectrometric study of cyclohexene

In this work, photoionization and dissociation of cyclohexene have been studied by means of coupling a reflectron time‐of‐flight mass spectrometer with the tunable vacuum ultraviolet (VUV) synchrotron radiation. The adiabatic ionization energy of cyclohexene as well as the appearance energies of its fragment ions C₆H₉⁺, C₆H₇⁺, C₅H₇⁺, C₅H₅⁺, C₄H₆⁺, C₄H₅⁺, C₃H₅⁺ and C₃H₃⁺ were derived from the onset of the photoionization efficiency (PIE) curves. The optimized structures for the transition states and intermediates on the ground state potential energy surfaces related to photodissociation of cyclohexene were characterized at the ωB97X‐D/6‐31+g(d,p) level. The coupled cluster method, CCSD(T)/cc‐pVTZ, was employed to calculate the corresponding energies with the zero‐point energy corrections by the ωB97X‐D/6‐31+g(d,p) approach. Combining experimental and theoretical results, possible formation pathways of the fragment ions were proposed and discussed in detail. The retro‐Cope rearrangement was found to play a crucial role in the formation of C₄H₆⁺, C₄H₅⁺ and C₃H₅⁺. Intramolecular hydrogen migrations were observed as dominant processes in most of the fragmentation pathways of cyclohexene. The present research provides a clear picture of the photoionization and dissociation processes of cyclohexene in the 8‐ to 15.5‐eV photon energy region. Copyright © 2016 John Wiley & Sons, Ltd.     

Dissociative Photoionization of 1,4-Dioxane with Tunable VUV Synchrotron Radiation

The photoionization and photodissociation of 1,4-dioxane have been investigated with a reflectron time-of-flight photoionization mass spectrometry and a tunable vacuum ultraviolet synchrotron radiation in the energy region of 8.0-15.5 eV. Parent ion and fragment ions at m/z 88, 87, 58, 57, 45, 44, 43, 41, 31, 30, 29, 28 and 15 are detected under supersonic conditions. The ionization energy of DX as well as the appearance energies of its fragment ions C₄H₇O₂⁺, C₃H₆O⁺, C₃H₅O⁺, C₂H₅O⁺, C₂H₄O⁺, C₂H₃O⁺, C₃H₅⁺, CH₃O⁺, C₂H₆⁺, C₂H₅⁺/CHO⁺, C₂H₄⁺ and CH₃⁺ was determined from their photoionization efficiency curves. The optimized structures for the neutrals, cations, transition states and intermediates related to photodissociation of DX are characterized at the B3LYP/6-31+G(d,p) level and their energies are obtained by G3B3 method. Possible dissociative channels of the DX are proposed based on comparison of experimental AE values and theoretical predicted ones. Intramolecular hydrogen migrations are found to be the dominant processes in most of the fragmentation pathways of 1,4-dioxane.     

VUV photoionisation of free azabenzenes: Pyridine, pyrazine, pyrimidine, pyridazine and s-triazine

Photoionisation mass spectrometry was used to obtain the fragmentation pathways of pyridine, pyridazine, pyrimidine, pyrazine and s-triazine molecules upon absorption of 23.0, 15.7 and 13.8 eV synchrotron photons. The ionic fragments observed vary from molecule to molecule, however C₂H₂⁺, HCN⁺and HCNH⁺ are common to all five molecules at the three photon energies. Furthermore, the presence of C₂H₂N₂⁺, C₃H₃N⁺ and C₄H₄⁺ in the spectra of some of the molecules suggests dissociation pathways via loss of HCN moieties. The respective parent cations, m/q=79, 80 and 81 have a greater yield at low photon energies when compared to the most intense fragment peak in each spectra. We recorded two of the fragment cation yields, as well as the parent photoion yield curves of pyridine, pyridazine, and pyrimidine in the 8–30 eV range. The formation of abundant cation fragments show a strong propensity of the molecules for dissociation after the absorption of VUV photons higher than 14 eV. The differences in relative fragment yields from molecule to molecule, and when changing the excitation energy, suggest significant bond rearrangements and nuclear motion during the dissociation time. Thus, bond cleavage is dependent on the photon energy deposited in the molecule and on intramolecular reactivity. With the aid of photoion yield curves and energy estimations we have assigned major peaks in the spectra and discussed their fragmentation pathways.     

Theoretical Investigation on Photoionization and Dissociative Photoionization of Toluene

The photoionization and dissociation photoionization of toluene have been studied using quantum chemistry methods.The geometries and frequencies of the reactants,transition states and products have been performed at B3LYP/6-311++G (d,p) level,and single-point energy calculations for all the stationary points were carried out at DFT calculations of the optimized structures with the G3B3 level.The ionization energies of toluene and the appearance energies for major fragment ions,C₇H₇⁺,C₆H₅⁺,C₅H₆⁺,C₅H₅⁺,are determined to be 8.90,11.15 or 11.03,12.72,13.69,16.28 eV,respectively,which are all in good agreement with published experimental data.With the help of available published experimental data and theoretical results,four dissociative photoionization channels have been proposed:C₇H₇⁺+H,C₆H₅⁺+CH₃,C₅H₆⁺+C₂H₂,C₅H₅⁺+C₂H₂+H.Transition structures and intermediates for those isomerization processes are determined in this work.Especially,the structures of C₅H₆⁺ and C₅H₅⁺ produced by dissociative photoionization of toluene have been defined as chain structure in this work with theoretical calculations.     

Dissociative photoionization of isoprene: experiments and calculations

Vacuum ultraviolet (VUV) dissociative photoionization of isoprene in the energy region 8.5–18 eV was investigated with photoionization mass spectroscopy (PIMS) using synchrotron radiation (SR). The ionization energy (IE) of isoprene as well as the appearance energies (AEs) of its fragment ions C₅H₇⁺, C₅H₅⁺, C₄H₅⁺, C₃H₆⁺, C₃H₅⁺, C₃H₄⁺, C₃H₃⁺ and C₂H₃⁺ were determined with photoionization efficiency (PIE) curves. The dissociation energies of some possible dissociation channels to produce those fragment ions were also determined experimentally. The total energies of C₅H₈ and its main fragments were calculated using the Gaussian 03 program and the Gaussian‐2 method. The IE of C₅H₈, the AEs for its fragment ions, and the dissociation energies to produce them were predicted using the high‐accuracy energy model. According to our results, the experimental dissociation energies were in reasonable agreement with the calculated values of the proposed photodissociation channels of C₅H₈. Copyright © 2009 John Wiley & Sons, Ltd.     

Photofragmentation of 2‐Deoxy‐D‐Ribose Molecules in the Gas Phase

We have measured the synchrotron‐induced photofragmentation of isolated 2‐deoxy‐D ‐ribose molecules (C₅H₁₀O₄) at four photon energies, namely, 23.0, 15.7, 14.6, and 13.8 eV. At all photon energies above the molecule′s ionization threshold we observe the formation of a large variety of molecular cation fragments, including CH₃⁺, OH⁺, H₃O⁺, C₂H₃⁺, C₂H₄⁺, CH_xO⁺ (x=1,2,3), C₂H_xO⁺ (x=1–5), C₃H_xO⁺ (x=3–5), C₂H₄O₂⁺, C₃H_xO₂⁺ (x=1,2,4–6), C₄H₅O₂⁺, C₄H_xO₃⁺ (x=6,7), C₅H₇O₃⁺, and C₅H₈O₃⁺. The formation of these fragments shows a strong propensity of the DNA sugar to dissociate upon absorption of vacuum ultraviolet photons. The yields of particular fragments at various excitation photon energies in the range between 10 and 28 eV are also measured and their appearance thresholds determined. At all photon energies, the most intense relative yield is recorded for the m/q=57 fragment (C₃H₅O⁺), whereas a general intensity decrease is observed for all other fragments— relative to the m/q=57 fragment—with decreasing excitation energy. Thus, bond cleavage depends on the photon energy deposited in the molecule. All fragments up to m/q=75 are observed at all photon energies above their respective threshold values. Most notably, several fragmentation products, for example, CH₃⁺, H₃O⁺, C₂H₄⁺, CH₃O⁺, and C₂H₅O⁺, involve significant bond rearrangements and nuclear motion during the dissociation time. Multibond fragmentation of the sugar moiety in the sugar–phosphate backbone of DNA results in complex strand lesions and, most likely, in subsequent reactions of the neutral or charged fragments with the surrounding DNA molecules.     

Experimental and theoretical study on the photoionization of styrene

This study employed a vacuum ultraviolet synchrotron radiation source and reflectron time-of-flight mass spectrometry (TOF-MS) to investigate the photoionization and dissociation of styrene. By analyzing the photoionization mass spectrum and efficiency curve alongside G3B3 theoretical calculations, we determined the ionization energy of the molecular ion, appearance energy of fragment ions, and relevant dissociation pathways. The major ion peaks observed in the photoionization mass spectra of styrene correspond to C₈H₈⁺, C₈H₇⁺ and C₆H₆⁺. The ionization energy of styrene is measured as 8.46 ± 0.03 eV, whereas the appearance energies of C₈H₇⁺ and C₆H₆⁺ are found to be 12.42 ± 0.03 and 12.22 ± 0.03 eV, respectively, in agreement with theoretical values. The main channel for the photodissociation of styrene molecular ions is the formation of benzene ions, whereas the dissociation channel that loses hydrogen atoms is the secondary channel. Based on the experimental results and empirical formulas, the required dissociation energies (E_d) of C₈H₇⁺, C₈H₆⁺ and C₆H₆⁺ are calculated to be (3.96 ± 0.06), (4.00 ± 0.06) and (3.76 ± 0.06) eV, respectively. Combined with related thermochemical parameters, the standard enthalpies of formations of C₈H₈⁺, C₈H₇⁺, C₈H₆⁺ and C₆H₆⁺ are determined to be 964.2, 1346.3, 1350.2 and 1327.0 kJ/mol, respectively. Based on the theoretical study, the kinetic factors controlling the styrene dissociation reaction process are determined by using the Rice–Ramsperger–Kassel–Marcus (RRKM) theory. This provides a reference for further research on the atmospheric photooxidation reaction mechanism of styrene in atmospheric and interstellar environments.     

Experiments and Calculations on Photoionization and Dissociative Photoionization of CH2CO

The dissociative photoionization of molecular‐beam cooled CH₂CO in a region of ?10–20 eV was investigated with photoionization mass spectrometry using a synchrotron radiation as the light source. Photoionization efficiency curves of CH₂CO⁺ and of observed fragment ions CH₂⁺, CHCO⁺, HCO⁺, C₂O⁺, CO⁺, and C₂H₂⁺ were measured to determine their appearance energies. Relative branching ratios as a function of photon energy were determined. Energies for formation of these observed fragment ions and their neutral counterparts upon ionization of CH₂CO are computed with the Gaussian‐3 method. Dissociative photoionization channels associated with six observed fragment ions are proposed based on comparison of determined appearance energies and predicted energies. The principal dissociative processes are direct breaking of C=C and C‐H bonds to form CH₂⁺ + CO and CHCO⁺ + H, respectively; at greater energies, dissociation involving H migration takes place.     

Strychninium N‐phthaloyl‐β‐alaninate N‐phthaloyl‐β‐alanine and brucinium N‐phthaloyl‐β‐alaninate 5.67‐hydrate

Comparison of the structures of strychninium N‐phthaloyl‐β‐alaninate N‐phthaloyl‐β‐alanine, C₂₁H₂₃N₂O₂⁺·C₁₁H₈NO₄⁻·C₁₁H₉NO₄, and brucinium N‐phthaloyl‐β‐alaninate 5.67‐hydrate, C₂₃H₂₇N₂O₄⁺·C₁₁H₈NO₄⁻·5.67H₂O, reveals that, unlike strychninium cations, brucinium cations display a tendency to produce stacking inter­actions with cocrystallizing guests.     

Differences and similarities among hypoxanthinium nitrate hydrate structures

Crystals of hypoxanthinium (6‐oxo‐1H,7H‐purin‐9‐ium) nitrate hydrates were investigated by means of X‐ray diffraction at different temperatures. The data for hypoxanthinium nitrate monohydrate (C₅H₅N₄O⁺·NO₃^?·H₂O, Hx1 ) were collected at 20, 105 and 285 K. The room‐temperature phase was reported previously [Schmalle et al. (1990). Acta Cryst. C 46 , 340–342] and the low‐temperature phase has not been investigated yet. The structure underwent a phase transition, which resulted in a change of space group from Pmnb to P2₁/n at lower temperature and subsequently in nonmerohedral twinning. The structure of hypoxanthinium dinitrate trihydrate (H₃O⁺·C₅H₅N₄O⁺·2NO₃^?·2H₂O, Hx2 ) was determined at 20 and 100 K, and also has not been reported previously. The Hx2 structure consists of two types of layers: the `hypoxanthinium nitrate monohydrate' layers (HX) observed in Hx1 and layers of Zundel complex H₃O⁺·H₂O interacting with nitrate anions (OX). The crystal can be considered as a solid solution of two salts, i.e. hypoxanthinium nitrate monohydrate, C₅H₅N₄O⁺·NO₃^?·H₂O, and oxonium nitrate monohydrate, H₃O⁺(H₂O)·NO₃^?.     

Distinguishing two isomeric mephedrone substitutes with selective reagent ionisation mass spectrometry (SRI‐MS)

The isomers 4‐methylethcathinone and N‐ethylbuphedrone are substitutes for the recently banned drug mephedrone. We find that with conventional proton transfer reaction mass spectrometry (PTR‐MS), it is not possible to distinguish between these two isomers, because essentially for both substances, only the protonated molecules are observed at a mass‐to‐charge ratio of 192 (C₁₂H₁₈NO⁺). However, when utilising an advanced PTR‐MS instrument that allows us to switch the reagent ions (selective reagent ionisation) from H₃O⁺ (which is commonly used in PTR‐MS) to NO⁺, O₂⁺ and Kr⁺, characteristic product (fragment) ions are detected: C₄H₁₀N⁺ (72 Da) for 4‐methylethcathinone and C₅H₁₂N⁺ (86 Da) for N‐ethylbuphedrone; thus, selective reagent ionisation MS proves to be a powerful tool for fast detection and identification of these compounds. Copyright © 2013 John Wiley & Sons, Ltd.     

Coulomb explosion dynamics of N2O in intense laser-field: Identification of new two-body and three-body fragmentation pathways

The Coulomb explosion process of N₂O in an intense laser-field (∼5 PW/cm²) has been investigated by the high-resolution time-of-flight (TOF) spectroscopy. Six two-body explosion pathways involving the NO⁺, NO²⁺, N₂ ⁺ molecular ions have been securely identified from the momentum-scaled TOF spectra of the fragment ions. Assuming a linear geometry, three-body explosion pathways were investigated by sequential and concerted explosion models. When the concerted model is adopted, the observed momentum distributions of six atomic ion channels; N⁺, N²⁺, N³⁺, O⁺, O²⁺ and O³⁺, were well fitted using the Gaussian momentum distribution with the optimized bond elongation factor of 2.2(3). From the yields of individual Coulomb explosion pathways determined by the fit, the abundance of the parent ions, N₂O^z+ (z=2–8), prior to the two- body and three-body explosion processes was found to have a smooth distribution with a maximum at z∼3.     

Sequential two photon dissociation of cyanobenzene cation

In continuation of our studies in the new area of multiple photon laser dissociation of ions, we report evidence for the sequential two photon dissociation of cyanobenzene radical cation, C₆H₅CN⁺, to produce predominantly C₆H⁺₄ and HCN. The complete excitation function for this process, as well as for a single photon process occurring at higher energies, are compared to the photoelectron spectrum of cyanobenzene to elucidate the nature of the transitions involved. An exact kinetic expression is derived and used to obtain information about the absorption spectra of C₆H₅CN⁺ in its ground vibronic state and with internal energy between 2.0 and 2.8 eV. Finally, data from our earlier study of benzene radical cation is reanalyzed and discussed.     

Two‐component molecular crystals from N‐heteroaromatics and nitro­benzoic acids

Five two‐component molecular crystals, benzimidazolium 3‐nitro­benzoate, C₇H₇N₂⁺·C₇H₄NO₄^?, (I), benzimidazolium 4‐nitro­benzoate, C₇H₇N₂⁺·C₇H₄NO₄^?, (II), 1H‐benzotriazole–3‐nitro­benzoic acid (1/1), C₆H₅N₃·C₇H₅NO₄, (III), imidazol­ium 3‐nitro­benzoate, C₃H₅N₂⁺·C₇H₄NO₄^?, (IV), and imid­azolium 4‐nitro­benzoate, C₃H₅N₂⁺·C₇H₄NO₄^?, (V), were prepared with the aim of making chiral crystals. Only (I) crystallizes in a chiral space group. The mol­ecules of (I) and (II) are linked by hydrogen bonds to form 2₁ spiral chains. In (III), (IV) and (V), macrocyclic structures are formed from two acid and two base components, by an alternate arrangement of the acid and base moieties.     

Hydro­gen bonding in proton‐transfer compounds of 5‐sulfosalicylic acid with bicyclic heteroaromatic Lewis bases

The crystal structures of quinolinium 3‐carboxy‐4‐hydroxy­benzene­sulfonate trihydrate, C₉H₈N⁺·C₇H₅O₆S⁻·3H₂O, (I), 8‐hydroxy­quinolinium 3‐carboxy‐4‐hydroxy­benzene­sulfonate monohydrate, C₉H₈NO⁺·C₇H₅O₆S⁻·H₂O, (II), 8‐amino­quinolinium 3‐carboxy‐4‐hydroxy­benzene­sulfonate dihydrate, C₉H₉N₂⁺·C₇H₅O₆S⁻·2H₂O, (III), and 2‐carboxy­quinolinium 3‐carboxy‐4‐hydroxy­benzene­sulfonate quinolinium‐2‐carboxylate, C₁₀H₈NO₂⁺·C₇H₅O₆S⁻·C₁₀H₇NO₂, (IV), four proton‐transfer compounds of 5‐sulfosalicylic acid with bicyclic heteroaromatic Lewis bases, reveal in each the presence of variously hydrogen‐bonded polymers. In only one of these compounds, viz. (II), is the protonated quinolinium group involved in a direct primary N⁺—H⋯O(sulfonate) hydrogen‐bonding interaction, while in the other hydrates, viz. (I) and (III), the water mol­ecules participate in the primary intermediate interaction. The quinaldic acid (quinoline‐2‐carboxylic acid) adduct, (IV), exhibits cation–cation and anion–adduct hydrogen bonding but no direct formal heteromolecular interaction other than a number of weak cation–anion and cation–adduct π–π stacking associations. In all other compounds, secondary interactions give rise to network polymer structures.