Functional modification,self-assembly and application of calix[4]resorcinarenes

As a special subset of calix[4]arene, calix[4]resorcinarene is an excellent molecular platform which could be modified by introducing functional groups to multiple sites at the upper and lower rims. There are mainly three ways to build functionalized calix[4]resorcinarene derivatives: (1) modification on the C-2 sites of calix[4]resorcinarenes; (2) modification on the phenolic hydroxyl groups of calix[4]resorcinarenes; (3) modification on the bridging methylenes at lower rim of calix[4]resorcinarenes. Functionalized calix[4]resorcinarene derivatives play an important role in the development of self-assembly chemistry, among which hydrogen bonding and metal coordination are the two most common interactions to obtain multicomponent structures. Moreover, due to the excellent topological structures and various active substituents of functionalized calix[4]resorcinarene derivatives, their applications in various fields, such as nanoparticles, catalysts, fluorescent materials, and sensors, have been briefly presented in this paper.

     

Correlating Solution- and Solid-State Structures of Conformationally Flexible Resorcinarenes: Significance of a Sulfonyl Group in Intramolecular Self-Inclusion

The synthesis of tetramethoxyresorcinarene podands bearing p-toluene arms connected by -SO₃- ( 1 ) and -CH₂O- ( 2 ) linkers is presented herein. In the solid state, the resorcinarene podand 1 forms an intramolecular self-inclusion complex with the pendant p-toluene group of a podand arm, whereas the resorcinarene podand 2 does not show self-inclusion. The conformations of the flexible resorcinarene podands in solution were investigated by variable-temperature experiments using 1D and 2D NMR spectroscopic techniques as well as by computational methods, including a conformational search and subsequent DFT optimisation of representative structures. The ¹H NMR spectra of 1 and 2 at room temperature show a single set of proton signals that are in agreement with C_4v symmetry. At low temperatures, the molecules exist as a mixture of boat conformations featuring slow exchange on the NMR timescale. Energy barriers (ΔG^≠₂₉₈) of 55.5 and 52.0 kJ mol⁻¹ were calculated for the boat-to-boat exchange of 1 and 2 , respectively. The results of the ROESY experiments performed at 193 K and computational modelling suggest that in solution the resorcinarene podand 1 adopts a similar conformation to that present in its crystal structure, whereas podand 2 populates a more versatile range of conformations in solution.     

FLUORESCENT POLYENE ALIPHATICS AS SPECTROSCOPIC AND MECHANISTIC PROBES FOR BACTERIAL LUCIFERASE: EVIDENCE AGAINST CARBONYL PRODUCT FROM ALDEHYDE AS THE PRIMARY EXCITED SPECIES

The fluorescent α-parinaric acid (α-PAC) and β-parinaric acid (β-PAC) were converted to the corresponding aldehydes and alcohols all of which exhibited absorption and fluorescence properties closely resembling those of the parent acids. α-PAC and β-PAC each binds to luciferase in competition with aldehyde. The hydrophobic nature of the aldehyde site was indicated by the enhanced fluorescence quantum yields of the bound α-PAC and β-PAC. These two polyene acids and the β-parinaryl alcohol were shown to stabilize the luciferase flavin-peroxide intermediate. α-Parinaraldehyde (α-PAD) and bt-parinaraldehyde (β-PAD) were active substrates for Vibrio harveyi and Vibrio fischeri luciferases and, for the former enzyme, exhibited K_m, values similar to and quantum yields about20–30% as those for decanal and dodecanal. For the V. harveyi luciferase with reduced FMN as a co-substrate, the α-PAD- or β-PAD-initiated luminescence was indistinguishable from the normal emission obtained with octanal (γ_max 495 nm) showing no additional 430-nm component correlatable with emission from excited α-PAC or β-PAC. In reactions using reduced 2-thioFMN for V. harveyi luciferase or reduced FMN for V. fischeri luciferase plus yellow fluorescent protein, the replacement of octanal by β-PAD again resulted in no additional 430-nm emission. The lack of any emission correlatable with excited α-PAC, β-PAC, or equivalent carbonyl product was not due to the quenching of the polyene moiety by chemical transformation, binding to luciferase, or a 100% energy transfer to the flavin 4a-hydroxide emitter. These results strongly favor singlet state of flavin 4a-hydroxide rather than singlet or triplet carbonyl product from aldehyde as the primary excited species in the normal luciferase reaction in the absence of any additional fluorescent protein.     

Quasi-Complete Solvation of C-Phenylcalix[4]resorcinarene in the Crystalline State. Single Crystal X-ray Diffraction Study

The crystal structure of C-phenylcalix[4]resorcinarene in a very solvated environment (DMSO) has been determined. The asymmetric unit contains nine molecules of DMSO and one molecule of water for each molecule of the resorcinarene. The C-phenylcalix[4]resorcinarene adopts an approximate C2_v symmetry (boat conformation, also known as flattened-cone conformation) in which two opposite resorcinol rings are almost parallel, while the other two are nearly coplanar.4,6,10,12,16,18,22,24-Octahydroxy-2,8,14,20-tetraphenyl-calix(4) arene.Supplementary data related to this article are deposited with the British Library as Supplementary Publication No. 82308 (3 pages).     

A review of shape memory polymers bearing reversible binding groups

Shape memory polymers (SMP) can be deformed to a stable, temporary shape and recovered to their original shape by applying a stimulus. These networks rely on the presence of two types of net points to establish their permanent and temporary shapes. Classical strategies to stabilize temporary shapes rely on cooling below T_g/T_m where macromolecules become pinned in a stressed state. Recovery of the SMP usually involves heating to above the transition temperature where the permanent shape is remembered. Employing reversible binding groups (RBGs) in SMPs has emerged as an alternative strategy for stabilizing temporary shapes or imparting recyclability of the permanent shape. The use of dynamic chemistry often engenders additional functionality such as intrinsic self-healing characteristics or alternative shape recovery triggering strategies. SMPs bearing both supramolecular and covalent RBGs will be reviewed with an emphasis on hydrogen bonding, ionic interactions, metal–ligand coordination, and dynamic covalent exchange and addition reactions. © 2016 Wiley Periodicals, Inc. J. Polym. Sci., Part B: Polym. Phys. 2016 , 54, 1340–1364     

Homoleptic Isocyanide Metalates

Novelties and surprises in the chemistry of metal isocyanides : The synthesis and structure determination of homoleptic isocyanide metalates [M(CNXyl)_m]⁻ (M=Co, m=4; M=Mn, m=5; Xyl=2,6-Me₂C₆H₃) indicate that we need to revise our understanding of transition metal–isocyanide interactions. Further investigations will be required to determine whether these salts with isocyanide metalate ions display a chemistry as rich as that of the analogous carbonyl metalates.     

A convenient synthesis of α,α′‐ homo‐ and α,α′‐hetero‐bifunctionalized poly(ε‐caprolactone)s by ring opening polymerization: The potentially valuable precursors for miktoarm star copolymers

Two new ring opening polymerization (ROP) initiators, namely, (3‐allyl‐2‐(allyloxy)phenyl)methanol and (3‐allyl‐2‐(prop‐2‐yn‐1‐yloxy)phenyl)methanol each containing two reactive functionalities viz. allyl, allyloxy and allyl, propargyloxy, respectively, were synthesized from 3‐allylsalicyaldehyde as a starting material. Well defined α‐allyl, α′‐allyloxy and α‐allyl, α′‐propargyloxy bifunctionalized poly(ε‐caprolactone)s with molecular weights in the range 4200–9500 and 3600–10,900 g/mol and molecular weight distributions in the range 1.16–1.18 and 1.15–1.16, respectively, were synthesized by ROP of ε‐caprolactone employing these initiators. The presence of α‐allyl, α′‐allyloxy and α‐allyl, α′‐propargyloxy functionalities on poly(ε‐caprolactone)s was confirmed by FT‐IR, ¹H, ¹³C NMR spectroscopy, and MALDI‐TOF analysis. The kinetic study of ROP of ε‐caprolactone with both the initiators revealed the pseudo first order kinetics with respect to ε‐caprolactone consumption and controlled behavior of polymerization reactions. The usefulness of α‐allyl, α′‐allyloxy functionalities on poly(ε‐caprolactone) was demonstrated by performing the thiol‐ene reaction with poly(ethylene glycol) thiol to obtain (mPEG)₂‐PCL miktoarm star copolymer. α‐Allyl, α′‐propargyloxy functionalities on poly(ε‐caprolactone) were utilized in orthogonal reactions i.e copper catalyzed alkyne‐azide click (CuAAC) with azido functionalized poly(N‐isopropylacrylamide) followed by thiol‐ene reaction with poly(ethylene glycol) thiol to synthesize PCL‐PNIPAAm‐mPEG miktoarm star terpolymer. The preliminary characterization of A₂B and ABC miktoarm star copolymers was carried out by ¹H NMR spectroscopy and gel permeation chromatography (GPC). © 2015 Wiley Periodicals, Inc. J. Polym. Sci., Part A: Polym. Chem. 2016 , 54, 844–860     

Gas-Phase Reactivity of Carboxylic Acid Functional Groups with Carbodiimides

Gas-phase modification of carboxylic acid functionalities is performed via ion/ion reactions with carbodiimide reagents [N-cyclohexyl-N′-(2-morpholinoethyl)carbodiimide (CMC) and [3-(3-Ethylcarbodiimide-1-yl)propyl]trimethylaminium (ECPT)]. Gas-phase ion/ion covalent chemistry requires the formation of a long-lived complex. In this instance, the complex is stabilized by an electrostatic interaction between the fixed charge quaternary ammonium group of the carbodiimide reagent cation and the analyte dianion. Subsequent activation results in characteristic loss of an isocyanate derivative from one side of the carbodiimide functionality, a signature for this covalent chemistry. The resulting amide bond is formed on the analyte at the site of the original carboxylic acid. Reactions involving analytes that do not contain available carboxylic acid groups (e.g., they have been converted to sodium salts) or reagents that do not have the carbodiimide functionality do not undergo a covalent reaction. This chemistry is demonstrated using PAMAM generation 0.5 dendrimer, ethylenediaminetetraacetic acid (EDTA), and the model peptide DGAILDGAILD. This work demonstrates the selective gas-phase covalent modification of carboxylic acid functionalities.      

Polymeric dopant effects of bent‐core covalent‐bonded and hydrogen‐bonded structures on banana‐shaped liquid crystalline complexes

Two series of banana‐shaped liquid crystalline (LC) H‐bonded complexes HP_m / CB_n (i.e., bent‐core H‐bonded side‐chain homopolymer HP mixed with bent‐core covalent‐bonded small molecule CB ) and CP_m / HB_n (i.e., bent‐core covalent‐bonded side‐chain homopolymer CP mixed with bent‐core H‐bonded small molecular complex HB ) with various m/n molar ratios were developed. The bent‐core covalent‐ and H‐bonded structural moieties were homopolymerized in the banana‐shaped LC H‐bonded complexes HP_m / CB_n and CP_m / HB_n , respectively. The influences of m/n molar ratios (polymeric moieties vs. small molecular moieties) on the mesomorphic and electro‐optical properties of both banana‐shaped LC H‐bonded complexes HP_m / CB_n and CP_m / HB_n were investigated. The polar smectic phases could be achieved and stabilized by smaller contents of polymeric dopants in banana‐shaped LC H‐bonded complexes, such as HP1/CB10 , HP1/CB15 , CP1/HB10 , and CP1/HB15 , which possessed tunable spontaneous polarization (Ps) values according to the molar ratios of m/n , that is, lower Ps values obtained in H‐bonded complexes HP_m /CB_n and CP_m / HB_n with higher ratios of H‐bonded moieties (larger m/n molar ratios), respectively. © 2010 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem 48: 764–774, 2010     

Calix[4]resorcinarene macrocycles

Supramolecular chemistry is an interdisciplinary scientific field, including chemical, physical and biological properties of more complex chemical species than the molecules themselves. Calixarenes/calixresorcinarenes are macrocyclic compounds, consisting of ‘n’ phenolic/resorcinolic units linked together by methylene bridges; these macrocycles are often used for molecular recognition. Thus, different modifications can be made to both the lower and upper rim, allowing the construction of well-defined multivalent buildings. In this work, three calix[4]resorcinarene macrocycles were synthesized, namely C-dec-9-en-1-ylcalix[4]resorcinarene (CAL 11U), C-trans-2, cis-6-octa-1,5-dien-1-ylcalix[4]resorcinarene (CAL 9U) and C-nonylcalix[4]resorcinarene (CAL 10) by a simple condensation reaction. The compounds CAL 11U and CAL 10 have been already synthesized by researchers, while the CAL 9U has been synthesized for the first time. Their structures were confirmed using ATR-FTIR, ¹H NMR and ¹³C NMR. Thermal analysis combined with mass spectrometric evolved analysis of the vapors was used to study the thermal behavior of the different synthesized molecules, and they were the subject of characterization by X-ray powder diffraction in order to analyze their degree of crystallinity.

     

Separation of Enantiomers of Drugs by Capillary Electrophoresis with Permethyl‐gamma‐Cyclodextrin as Chiral Solvating Agent

High‐throughput screening is a promising new approach in analytical chemistry. Within the framework of an extended screening program (The German‐Chinese Drug Screening Program), the enantioseparation of 86 drugs was investigated by capillary zone electrophoresis in the presence of the chiral solvating agent (CSA) octakis‐(2,3,6‐tri‐O‐methyl)‐γ‐cyclodextrin (TM‐γ‐CD). By this means, 15 drugs could be separated into enantiomeric pairs. Approximate measures for the degree of interaction (migration retardation factor, R_m) and for the degree of enantiomer recognition (migration separation factors, α_m) revealed intriguing patterns that were compared with those found for native γ‐cyclodextrin (γ‐CD). Although there is a distinct influence of the analyte structure on the electrophoretic data, interpretation remains difficult. Most remarkably, permethylation of γ‐CD leads neither to a higher affinity nor to better chiral recognition, in contrast to the findings with α‐CD.     

Revealing Phosphorus Nitrides up to the Megabar Regime: Synthesis of α′-P3N5, δ-P3N5 and PN2

Non-metal nitrides are an exciting field of chemistry, featuring a significant number of compounds that can possess outstanding material properties. These properties mainly rely on maximizing the number of strong covalent bonds, with crosslinked XN₆ octahedra frameworks being particularly attractive. In this study, the phosphorus–nitrogen system was studied up to 137 GPa in laser-heated diamond anvil cells, and three previously unobserved phases were synthesized and characterized by single-crystal X-ray diffraction, Raman spectroscopy measurements and density functional theory calculations. δ-P₃N₅ and PN₂ were found to form at 72 and 134 GPa, respectively, and both feature dense 3D networks of the so far elusive PN₆ units. The two compounds are ultra-incompressible, having a bulk modulus of K₀=322 GPa for δ-P₃N₅ and 339 GPa for PN₂. Upon decompression below 7 GPa, δ-P₃N₅ undergoes a transformation into a novel α′-P₃N₅ solid, stable at ambient conditions, that has a unique structure type based on PN₄ tetrahedra. The formation of α′-P₃N₅ underlines that a phase space otherwise inaccessible can be explored through materials formed under high pressure.     

The determination of crown–cation complexation behavior in dioxane/water mixtures by conductometric studies

Using conductance measurements, an attempt has been made to gain detailed information about the specific molecular interactions of crown compounds with metal ions in a 1,4-dioxane/water binary system. Analyses of the transport data of dioxane/water mixtures yielded the mobility of the crown compound action complexes and the ion-pair dissociation constant of the crown compound–electrolyte complex. Binary mixed aqueous solvents are frequently employed in broad areas of chemistry. Their applicability ranges from synthetic and mechanistic studies in organic chemistry to biophysical chemistry, with emphasis on molecular interactions in biologically significant structures. Stability constants of crown compound complexes are determined by various methods, such as potentiometry (with ion selective electrodes), polarography, voltammetry, spectrophotometry, nuclear magnetic resonance, calorimetry and solubility. In this study the conductometry measurements have been carried out with high precision at optimal concentrations in dioxane/water systems. Structures of crown–cation complexes in dioxane/water mixtures are estimated from the conductance parameters (κ, Λ and α) as well as the complex formation constant, K_e = (Λ_MAm − Λ) / (Λ − Λ_MaLbAm) [L]. The conductance behavior of Na⁺, K⁺ chlorides and Na⁺ perchlorates with 18-crown-6, 15-crown-5, and 12-crown-4 have been studied in various dioxane/water systems (50%, 80%, and 85%) at 25°C. The all experimental studies have been made by the ratio 1 : 1 of the metal-ion and the crown ether, K_e. For the calculations, Excel. 5.0 was used as an application program. Copyright © 1998 John Wiley & Sons, Ltd.     

α-Lactam Electrophiles for Covalent Chemical Biology**

Electrophilic groups are one of the key pillars of contemporary chemical biology and medicinal chemistry. For instance, 3-membered N-heterocyclic compounds—such as aziridines, azirines, and oxaziridines—possess unique electronic and structural properties which underlie their potential and applicability as covalent tools. The α-lactams are also members of this group of compounds, however, their utility within the field remains unexplored. Here, we demonstrate an α-lactam reagent ( AM2 ) that is tolerant to aqueous buffers while being reactive towards biologically relevant nucleophiles. Interestingly, carboxylesterases 1 and 2 (CES1/2), both serine hydrolases with key roles in endo- and xenobiotic metabolism, were found as primary covalent targets for AM2 in HepG2 liver cancer cells. All in all, this study constitutes the starting point for the further development and exploration of α-lactam-based electrophilic probes in covalent chemical biology.     

Kinetic study of copper(I)‐catalyzed click chemistry step‐growth polymerization

Oligomers and polymers containing triazole units were synthesized by the copper(I)‐catalyzed 1,3‐dipolar cycloaddition step‐growth polymerization of four difunctional azides and alkynes. In a first part, monofunctional benzyl azide was used as a chain terminator for the polyaddition of 1,6‐diazidohexane and α,ω‐bis(O‐propargyl)diethylene glycol, leading to polytriazole oligomers of controlled average degree of polymerization (DP_n = 3–20), to perform kinetic studies on low‐viscosity compounds. The monitoring of the step‐growth click polymerization by ¹H NMR at 25, 45, and 60 °C allowed the determination of the activation energy of this click chemistry promoted polyaddition process, that is, E_a = 45 ± 5 kJ/mol. The influence of the catalyst content (0.1–5 mol % of Cu(PPh₃)₃Br according to azide or alkyne functionalities) was also examined for polymerization kinetics performed at 60 °C. In a second part, four high molar mass polytriazoles were synthesized from stoichiometric combinations of diazide and dialkyne monomers above with p‐xylylene diazide and α,ω‐bis(O‐propargyl)bisphenol A. The resulting polymers were characterized by DSC, TGA, SEC, and ¹H NMR. Solubility and thermal properties of the resulting polytriazoles were discussed based on the monomers chemical structure and thermal analyses. © 2008 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem 46: 5506–5517, 2008     

Structure and phase transitions in poly(diethylsiloxane)

The structure changes accompanying phase transitions in poly(diethylsiloxane) (PDES) have been studied by WAXS and SAXS techniques using oriented and isotropic samples. PDES may exist in two low-temperature modifications (the monoclinic α₁-form and presumably the “tetragonal” β₁-form) and two high-temperature modifications (the monoclinic α₂-form and the “tetragonal” β₂-form). In linear PDES the crystal - crystal transitions α₁–α₂ and β₁–β₂ occur near 214 and 206 K, respectively. At higher temperatures α₂ (280 K) and β₂ (290 K) forms transform into the mesomorphic phase α_m that gradually melts at 280–300 K giving an amorphous phase. According to x-ray and density data, α_m phase is also characterized by monoclinic structure slightly different from hexagonal packing.     

A Fluorescent Chemosensor Able to Distinguish between Ionic and Covalent Mercury Compounds

Macrolactone 1 has shown different fluorescent responsedepending on the ionic or covalent character of mercury compounds. This ligand also presents a very selective response to Hg(ClO₄)₂ versus Cd(ClO₄)₂.     

Ganglioside‐Selective Mechanosensitive Fluorescent Membrane Probes

The development of fluorescent probes to image forces in cells is an important challenge in chemistry and biology. Planarizable push‐pull probes have been introduced recently for this purpose. To provide most valuable information on forces in complex systems, these mechanosensitive ‘flipper’ probes will have to be localized by molecular recognition of targets of interest. Here we report fluorescent flippers that selectively recognize gangliosides on the surface of lipid bilayer membranes by formation of dynamic covalent boronate esters. The original flipper probes were equipped with 2‐fluorophenyl boronic acids and benzoboroxoles using consecutive triazole and oxime ligation. Evaluation was done in large unilamellar vesicles composed of EYPC/SM/CL/GM 40:40‐x:20:x to obtain mixed membranes with separate liquid‐disordered (L_d) and ganglioside (GM) containing liquid‐ordered (L_o) domains. With increasing GM concentration, fluorescence intensities increased and excitation maximum shifted to the red. Deconvolution of the spectra confirmed that these changes originate from a migration of the flipper probes from L_d to L_o domains upon binding to the gangliosides and thus the planarization in the more ordered environment. Control mechanophores without boronic acids failed to show the same response, and fructose partially inhibited the ganglioside sensitivity. These results demonstrate that it is possible to selectively accumulate mechanosensitive flipper probes in L_o domains and, more generally, that probe localization in complex membranes is possible and matters.     

N‐Alkyl Ammonium Resorcinarene Salts as High‐Affinity Tetravalent Chloride Receptors

N‐Alkyl ammonium resorcinarene salts (NARYs, Y=triflate, picrate, nitrate, trifluoroacetates and NARBr) as tetravalent receptors, are shown to have a strong affinity for chlorides. The high affinity for chlorides was confirmed from a multitude of exchange experiments in solution (NMR and UV/Vis), gas phase (mass spectrometry), and solid‐state (X‐ray crystallography). A new tetra‐iodide resorcinarene salt (NARI) was isolated and fully characterized from exchange experiments in the solid‐state. Competition experiments with a known monovalent bis‐urea receptor ( 5 ) with strong affinity for chloride, reveals these receptors to have a much higher affinity for the first two chlorides, a similar affinity as 5 for the third chloride, and lower affinity for the fourth chloride. The receptors affinity toward chloride follows the trend K₁?K₂?K₃≈ 5 >K₄, with K_a=5011 m ^?1 for 5 in 9:1 CDCl₃/[D₆]DMSO.     

Crystal Structure of C-(n-propyl)calix[4]resorcinarene and its Complex with Caffeine

Abstract

The crystal structures of the all-cis epimer of C-(n-propyl)calix[4]resorcinarene (1) and its caffeine complex are reported. 1 · CH₃CN · H₂O (2) crystallizes in the tetragonal space group P4, a = 14.3645(9), c = 9.3344(8) Å, V = 1926(2) ų. Refinement led to a final conventional R ₁ value of 0.047 for 3406 reflections and 236 parameters. The caffeine complex 1 · C₈H₁₀N₄O₂ · CH₃OH · H₂O (3) crystallizes in the triclinic space group P1, a = 11.2892(4), b = 13.0367(8), c = 16.9700(11) Å, α = 82.902(2), β = 79.713(3), γ = 88.053(2)°, V = 2438(2) ų. Refinement led to a final conventional R ₁ value of 0.067 for 6393 reflections and 641 parameters. The resorcinarene displays the usual bowl shape in both compounds. The caffeine molecule in 3 is hydrogen bonded to two resorcinarene and one water molecules and one of its methyl groups is included in the cavity of a third macrocycle, suggesting CH₃…π interactions. Extended hydrogen bonding patterns involving phenolic protons and solvent molecules are also present in both compounds.