Structures and properties of metal-free and magnesium tetrathieno[2,3-b]porphyrazine investigated using density functional theory

Density functional theory (DFT) and time-dependent density functional theory (TD-DFT) calculation were adopted to study the structures and properties of metal-free and magnesium tetrathieno[2,3-b]porphyrazine (TTPPzH₂ and TTPPzMg) using B3LYP method with the 6–31G(d) basis set. A comparison of the geometrical structures, atomic charges, molecular orbitals, UV-vis spectra and infrared (IR) spectra among tetrathieno[2,3-b]porphyrazine (TTPPzH₂), phthalocyanine (H₂Pc) and porphyrazine (H₂Pz) compounds was performed. The substituent effect of the thiophene heterocycle for electron-donating on the structures and properties of these compounds has been discussed. Compared with other atoms, the charge distribution of C_β atoms adjacent to the sulfur atom is significantly influenced by the thiophene heterocycle substituents. The enlargement of the HOMO-LUMO gaps from H₂Pc and MgPc to TTPPzH₂ and TTPPzMg is at the origin of the observed blue shift of the Q band when moving from H₂Pc to TTPPzH₂ compounds. Special emphasis has been devoted to the strongest B bands for TTPPzH₂ compounds which show red shift due to the large destabilization of the lower lying occupied orbitals compared with the corresponding B bands of H₂Pc compounds. With the assistance of animated pictures produced on the basis of the normal coordinates, the significant peaks and vibration modes in the IR spectra of all the compounds were assigned and analyzed.     

Geometrical and electronic structure of small copper nanoclusters: XANES and DFT analysis

The geometrical and electronic structure of small copper nanoclusters was studied by density functional theory (DFT) and analysis of X-ray absorption spectra. It was shown that the icosahedral geometry of small copper nanoclusters of 13 atoms was energetically more stable than cuboctahedral geometry. The binding energies in these structures were compared; the theoretical XANES spectra were compared with experiment. The paper gives the results of ab initio calculations of the electronic structure of copper clusters differing in size.     

Profiling energetics and spectroscopic signatures in prototropic tautomers of asymmetric phthalocyanine analogues

Density functional theory (DFT) and time-dependent density functional theory (TDDFT) were used to explain discrepancies in UV-vis and MCD spectra of the metal-free tribenzo[b,g,l]thiopheno[3,4-q]porphyrazine (1), substituted tribenzo[b,g,l]porphyrazine (2), and 2,3-bis(methylcarboxyl)phthalocyanine (3). On the basis of gas-phase and polarized continuum solvation model (PCM) DFT and TDDFT calculations, it was suggested that both NH tautomers contribute to the spectroscopic signature of 1, whereas the Q-band region of 2 and 3 is dominated by a single NH tautomer. For all tested compounds, it was found that the combination of the BP86 exchange-correlation functional, 6-31G(d) basis set, and TDDFT-PCM approach provides the best accuracy in energies of the Q(x)- and Q(y)-bands of the individual NH tautomers as well as correctly describes their relative energy differences, which are important in understanding of experimental spectroscopy of the target systems.     

Comparative study on two 2-pyrazoline derivatives with experimental and theoretical methods

Two 2-pyrazoline derivatives of 1-phenyl-3-(4-chlorophenyl)-5-(2-chlorophenyl)-2-pyrazoline (1) and 1-phenyl-3-(4-methylphenyl)-5-(2-chlorophenyl)-2-pyrazoline (2) have been synthesized and characterized by elemental analysis, IR, UV–Vis, and fluorescence spectra. The crystal structure of 2 has been determined by X-ray single crystal diffraction. For the two compounds, density functional theory (DFT) calculations of the structures and natural population atomic charge analysis have been performed at B3LYP/6-311G** level of theory. By using TD-DFT method, electron spectra of 1 and 2 have been predicted, which are in good agreement with the experimental ones. Comparative studies on 1 and 2 indicate that the change of substituted groups in 3-phenyl ring of pyrazoline ring will change the peak intensity and peak locations both in electron spectra and fluorescence spectra.     

EPR Spectra and Spin Density Distribution of O,S-Dimethyl 4,4-Dithioterephthalate Radical Anions

Abstract

The preparation of O-methyl S-trideuteromethyl 4,4-dithioterephthalate and S-methyl O-trideuteromethyl 4,4-dithioterephthalate is described. The EPR spectra of the corresponding radical anions are measured. Comparison with the spectrum of O,S-dimethyl 4,4-dithioterephthalate radical anions allows the unequivocal assignment of the proton hyperfine structure (proton “hfs”) coupling constants in the above asymmetric species. Assignment of the arene proton hfs coupling constants is achieved by PM6 and density functional theory MO calculations of the spin density distribution and application of McConnell's relationship a^H _μ = ?2.4·ρ^π _μ. The spin density distribution in the asymmetric title compound is compared with those in the radical anions of dimethyl terephthalate and the corresponding symmetric sulfur analogs.     

Theoretical and experimental study of montmorillonite intercalated with tetramethylammonium cation

Structural and vibrational features of Na-montmorillonite and montmorillonite intercalated with tetramethylammonium cation (TMA⁺) were characterized theoretically and experimentally. Theoretical study was performed using density functional theory with inclusion of dispersion corrections. The analysis of the hydrogen bonds in the calculated models has shown that the Na⁺ cations coordinated by six water molecules (Na-M model) are bound to montmorillonite layers by moderate hydrogen bonds between water molecules and basal oxygen atoms of the tetrahedral sheets. Hydrated Na⁺ cations are stabilized by relatively strong hydrogen bonds among water molecules. In the intercalate model, the TMA⁺ cation is fixed in the interlayer space by weak hydrogen bonds between the methyl groups and basal oxygen atoms of montmorillonite layers. The calculated vibrational spectra are in a good agreement with the measured infrared spectra. The detailed analysis of the simulated vibrational spectra allowed unambiguous identification of corresponding bands in the measured spectra and their assignment to the particular vibrational modes. For example, calculations clearly distinguished between AlMgOH and AlAlOH stretching vibrations and also between the coupled vibrations of the methyl groups of the TMA⁺ cations.     

Experimental and theoretical study of X-ray <Emphasis Type="Italic">K</Emphasis> edges absorption spectra of carbon and nitrogen in the phthalocyanine H<Subscript>2</Subscript>Pc molecule

The study of the electronic structure of H₂Pc was carried out to examine the structure of the lowest unoccupied molecular orbitals (LUMO) of molecule phthalocyanine by X-ray absorption spectroscopy using quantum-chemical calculations. The theoretical calculations were performed on the stationary theory (frozen orbital approximation, Z+1 model) and time-dependent density functional theory (TDDFT). A consideration of K edges absorption spectra of carbon and nitrogen in the common scale of binding energies allows estimating the contributions of AO of all phthalocyanine atoms to the LUMO, defining the sequence of levels, the binding energies of the corresponding levels, and also the character of electronic interactions between individual atoms. It was shown that the best agreement between the experimental and theoretical pre-edge structures of the absorption spectra of nitrogen and carbon for H₂Pc is observed in the case of the application of stationary density functional theory in Z+1 model to account for an X-ray hole. In this case the 2p _π AO of the Nα_(1,2) and Сα atoms make a predominant contribution to the LUMO. The 2p _π AO of the Nα_(1,2) atoms mainly contribute to the boundary LUMO with the energy ~–2.3 eV.     

Investigation of unsubstituted porphyrazine by proton NMR and the structure of porphyrazine ligands

The proton NMR spectra of unsubstituted porphyrazine (tetraazaporphine) and of its Zn complex in pyridine-D₅ and in CF₃COOD have been obtained for the first time. The observed strong deshielding of the pyrrole hydrogen atoms of these compounds compared with porphyrins indicates the existence of strong intramolecular hydrogen bonds with neighboring pyrrolenic nitrogen atoms. An unsymmetrical bridge structure is proposed for the reaction center of unsubstituted porphyrazine with significantly ionized N?H bonds. It is suggested that a symmetrical bridge structure almost completely ionized, may exist only in the presence of such strong electron-accepting substituents as halogen in the pyrrole rings of the porphyrazine macrocycle.     

DFT assessment of the spectroscopic constants and absorption spectra of neutral and charged diatomic species of group 11 and 14 elements

The spectroscopic constants and absorption spectra of neutral and charged diatomic molecules of group 11 and 14 elements formulated as [M₂]^+/0/? (M = Cu, Ag, Au), and [E₂]^+/0/? (E = C, Si, Ge, Sn, Pb) have been calculated at the PBE0/Def2‐QZVPP level of theory. The electronic and bonding properties of the diatomics have been analyzed by natural bond orbital analysis approach and topology analysis by the atoms in molecules method. Particular emphasis was given on the absorption spectra of the diatomic species, which were simulated by time‐dependent density functional theory calculations employing the hybrid Coulomb‐attenuating CAM‐B3LYP density functional. The simulated absorption spectra of the [M₂]^+/0/? (M = Cu, Ag, Au) and [E₂]^+/0/? (E = C, Si, Ge, Sn, Pb) species are in close resemblance with the experimentally observed spectra whenever available. The neutral M₂ and E₂ diatomics strongly absorb in the ultraviolet region, given rise to UVC, UVA and in a few cases UVB absorptions. In a few cases, weak absorbion bands also occur in the visible region. The absorption bands have thoroughly been analyzed and assignments of the contributing principal electronic transitions associated to individual excitations have been made. © 2014 Wiley Periodicals, Inc.     

Acid-base properties of thianaphthene-annulated porphyrazine and tetra(pyrazino)porphyrazine complexes with aluminum group metals

Acid-base properties of Al(III), Ga(III), and In(III) complexes with tert-butyl-substituted thianaphthene-annulated porphyrazine and tetra(2,3-pyrazino)porphyrazine in proton-donor medium (CH₂Cl₂-CF₃COOH) were studied by spectrophotometric titration. The concentration stability constants of the singly protonated complexes were determined. The effects of the metal nature and aromatic heterocyclic fragment on the basicity of meso-nitrogen atoms were analyzed. Negative inductive effect of the sulfur atom in the thianaphthene fragment reduces the basicity of the meso-nitrogen atoms as compared to analogous porphyrazine and phthalocyanine complexes. Acid-base transformations of the thianaphthene-annulated tetra(2,3-pyrazino)porphyrazine involve both meso-nitrogen atoms and those in the pyrazine rings.     

Synthesis and spectral properties of 1,2,5-thiadiazolo-, 1,2,5-selenadiazolo-, and benzo-fused β-phenyl-substituted porphyrazines

Cross cyclotetramerization of trans-2,3-diphenylbutanedinitrile with 1,2,5-thia(selena)diazole-3,4-dicarbonitriles or phthalodinitrile in the presence of magnesium butoxide gave mixtures of Mg(II) porphyrazine complexes which were treated with trifluoroacetic acid to isolate unsymmetrical hexaphenyl-substituted 1,2,5-thia(selena)diazolo-and benzo-fused porphyrazines together with diphenyltribenzoporphyrazine. Their ¹H NMR and electronic absorption spectra (in the UV and visible regions) were recorded. The effect of benzene and heteroring fusion on the electronic and steric structure and spectral properties of porphyrazine derivatives was studied in terms of the molecular orbital perturbation theory and semiempirical quantum-chemical calculations (AM1, PM3, ZINDO/S, CNDO/S).     

1，2，5-噻重氮和1，4-二正戊氧基苯环化的自由四氮杂卟啉及其金属镁配合物的结构和性质：密度泛函理论计算

用DFT方法计算分析了1，2，5-噻重氮和1，4-二正戊氧基苯环化的自由四氮杂卟啉及其金属镁配合物的分子和电子结构，理论计算的键参数和单晶结构测定结果一致。进一步对1，2，5-噻重氮和1，4-二正戊氧基苯环化的自由四氮杂卟啉的红外光谱进行了正则坐标分析和光谱模拟，以及用TD-DFT方法对1，2，5-噻重氮和1，4-二正戊氧基苯环化的四氮杂卟啉金属镁配合物的电子吸收光谱进行了分析和谱峰归属，比较了四氮杂卟啉环上取代基的电子性质对四氮杂卟啉衍生物光谱性质的影响。     

Detection of relative dimer and rotamer concentrations of diacetamide in different solvents by FT-IR spectroscopy and DFT calculations

The relative rotamer, dimer and tautomer concentrations of diacetamide have been studied by means of infrared spectroscopy, with the recorded spectra being analyzed employing results from density functional theory calculations. It is observed that the cis–trans monomeric form of diacetamide (1) is found to be the most stable isomer in all studied solvents, with trans–trans diacetamide (2) being found to be 20% of total diacetamide in methanol. While the dimer form of diacetamide (3) is present only in carbontetrachloride (about 34% of the total), its tautomeric forms (4, 5) are not favorable in any of the studied solvents.     

Au(II)化合物[Au(CH2)2PH2]2X2 (X＝F, Cl, Br, I)的量子化学理论研究

采用从头计算HF, MP2方法和密度泛函理论, 对Au(II)系列化合物[Au(CH₂)₂PH₂]₂X₂ (X＝F, Cl, Br, I)的几何结构、电子结构和振动频率进行了研究. 研究表明Au的5d和6s电子参与Au—Au以及Au—X之间的成键. Au—Au, Au—X键强烈的电子相关作用使HF方法不适于该体系的研究, BP86和B3LYP两种泛函给出较大的Au—Au和Au—X键长, 而MP2方法和局域的密度泛函方法则给出了合理的结构参数. 局域密度泛函方法计算得到的Au—Au键和 Au—X键振动频率也与实验数据符合较好. 还运用含时密度泛函理论计算了[Au(CH₂)₂PH₂]₂X₂的电子激发能, 对分子在紫外-可见光谱范围内的电子跃迁进行了分析, 考察了卤素配体对激发能的影响, 并结合分子轨道能级的变化对此给予了解释.     

A study of the electronic structure of phenylsilanes by X-ray emission spectroscopy and quantum chemical calculation methods

The electronic structure of a series of phenylsilanes Ph_4?n SiH _n (n = 0?C3) is studied by X-ray emission spectroscopy and quantum chemical calculations by the density functional theory method. Based on the calculations theoretical X-ray emission SiK??₁ spectra of phenylsilanes Ph_4?n SiH _n (n = 0?C4) are constructed and their energy structure and shape turn out to be well consistent with experiment. The distribution of the electron density of states with different symmetry of Si, C, H atoms are also constructed. An analysis of the obtained X-ray fluorescent SiK??₁ spectra and the distribution of the electron density of states in Ph₄Si and Ph₃SiH compounds shows that their energy structure is mainly determined by a system of the energy levels of phenyl ligands weakly perturbed by interactions with valence AOs of silicon. In the energy structure of MOs of the PhSiH₃ compound, energy orbitals related to t ₂ and a ₁ levels of tetrahedral SiH₄ are mainly presented.     

Electronic structure and optical properties of a tin-encapsulated nickel porphyrazine compound

The recently synthesized metal-encapsulated porphyrazine compound, [Sn(t-Bu)₂]₄-star-Ni(porphyrazine)-S₈, shows very interesting structural and optical absorption features compared with other metal-centered porphyrazines, e.g., metal phthalocyanines (Pc). Using self-consistent-field local density theory, we studied the ground-state and excited-state electronic structure of this molecule and compared it with its metal phthalocyanine analog NiPc. The theoretical optical spectra including oscillator strengths are in good agreement with experimental absorption and show that the characteristic transitions at the so-called Soret band in NiPc are red-shifted in the new compound. © 1994 John Wiley & Sons, Inc.     

13C and 15N NMR spectra of high‐energy polyazidocyanopyridines

¹³C and ¹⁵N NMR spectra of high‐energy 2,4,6‐triazidopyridine‐3,5‐dicarbonitrile, 2,3,5,6‐tetraazidopyridine‐4‐carbonitrile and 3,4,5,6‐tetraazidopyridine‐2‐carbonitrile are reported. The assignment of signals in the spectra was performed on the basis of density functional theory calculations. The molecular geometries were optimized using the M06‐2X functional with the 6‐311+G(d,p) basis set. The magnetic shielding tensors were calculated by the gauge‐independent atomic orbital method with the Tao–Perdew–Staroverov–Scuseria hybrid functional known as TPSSh. In all the calculations, a polarizable continuum model was used to simulate solvent effects. This approach provided accurate predictions of the ¹³C and ¹⁵N chemical shifts for all the three compounds despite complications arising due to non‐coplanar arrangement of the azido groups in the molecules. It was found that the ¹⁵N chemical shifts of the N_α atoms in the azido groups of 2,4,6‐triazidopyridines correlate with the ¹³C chemical shifts of the carbon atoms attached to these azido groups. Copyright © 2016 John Wiley & Sons, Ltd.     

Analysis of F and C NMR spectra of tetrafluorophthalic anhydride and its derivatives

¹⁹F and ¹³C NMR spectra of perfluorinated compounds (i.e., tetrafluorophthalic anhydride, its hydroxyl- and amino-derivatives, N-pentafluorophenyltetrafluorophthalimide, and hexafluoroindan-1,3-dione) were analysed. Different signals in NMR spectra were assigned based on the analysis of spin-spin coupling constants. All assignments made were further confirmed by density functional theory (DFT) calculations of ¹³C chemical shifts and J_C,F coupling constants.     

Kinetic energies to analyze the experimental auger electron spectra by density functional theory calculations

In the Auger electron spectra (AES) simulations, we define theoretical modified kinetic energies of AES in the density functional theory (DFT) calculations. The modified kinetic energies correspond to two final-state holes at the ground state and at the transition-state in DFT calculations, respectively. This method is applied to simulate Auger electron spectra (AES) of 2nd periodic atom (Li, Be, B, C, N, O, F)-involving substances (LiF, beryllium, boron, graphite, GaN, SiO₂, PTFE) by deMon DFT calculations using the model molecules of the unit cell. Experimental KVV (valence band electrons can fill K-shell core holes or be emitted during KVV-type transitions) AES of the (Li, O) atoms in the substances agree considerably well with simulation of AES obtained with the maximum kinetic energies of the atoms, while, for AES of LiF, and PTFE substance, the experimental F KVV AES is almost in accordance with the spectra from the transitionstate kinetic energy calculations.     

Synthesis,characterization, crystal structure determination and computational study of the high-spin iron(II) 2-cyanopyrazine complex trans-[Fe(pzCN)4Cl2]

A new mononuclear high-spin complex, trans-[Fe(pzCN)₄Cl₂] (1), was prepared from the reaction of FeCl₂.4H₂O and 2-cyanopyrazine (pzCN) in acetonitrile as a solvent. Suitable crystals of this complex for crystal structure determination were collected by slow evaporation of the produced pale orange solution. Complex 1 was characterized by elemental analysis (CHN), spectral methods (IR and UV–Vis), and single-crystal X-ray diffraction. The X-ray structural analysis indicated that the iron(II) is six-coordinated in an octahedral configuration by four N atoms from four 2-cyanopyrazine ligands and two chloride anions. Furthermore, the average of Fe–N bond lengths is 2.284(1)Å. It is well known that in the high-spin iron(II) phenanthroline and bipyridine complexes, the Fe–N bond lengths are around 2.2 Å. So, due to the Fe–N bond length in this complex, the iron(II) is unambiguously high-spin. The experimental evaluations on 1 have been complemented theoretically by the density functional theory (DFT) and TD-DFT calculations. The character of the Fe–N and Fe–Cl bonds was investigated using quantum theory of atoms in molecules. Additionally, electron delocalization and hyper-conjugative interactions of the synthesized complex were evaluated by natural bond orbital calculations.