Coupled cluster and density functional investigation of the hydrogen bond between halides,paraffines, olefins,and alkynes

By means of coupled cluster and density functional M06-2X calculations we have studied the directionality and energetics of the hydrogen bond (HB) between halides and the following H donors: methane, ethylene, and acetylene. The largest interaction energy was obtained for acetylene, the molecule in which the hydrogen atoms present the largest positive charge. For the complex [X···HCCH]^?, fluoride presented a different behavior since acetylene donates a hydrogen to fluoride and the [HF···CCH]^? complex was formed. We found that for ethylene there is a strong competition between the monodentate- and bidentate-like structures. Because of its small size, fluoride leads to a monodentate complex with C₂H₄. However, as we move down in the periodic table, the bidentate-like structure becomes more stable. In effect, for chloride and bromide they are nearly isoenergetic, while for iodide the bidentate-like complex is formed. These present results question previous investigations about the directionality of the HB in halide–ethylene complexes.     

Tuning the Catalytic Activity of a Pincer Complex of Rhodium(I) by Supramolecular and Redox Stimuli

We report the rhodium(I) complex [Rh(CNC−NDI)(CO)]⁺, in which CNC−NDI refers to a pincer-CNC ligand decorated with a naphthalenediimide moiety. Due to the presence of the planar CNC ligand and the naphthalenediimide moiety, the electronic nature of the complex can be modulated by means of supramolecular and redox stimuli, respectively. The metal complex shows a strong π–π-stacking interaction with coronene. This interaction has an impact on the electron-richness of the metal, as demonstrated by the shifting of the ν(CO) stretching band to a lower frequency. The addition of tetrabutylammonium fluoride facilitates the sequential one- and two-electron reduction of the NDI moiety of the ligand, thus resulting in a situation in which the ligand can increase its electron-donor strength in two levels. The nature of the interaction with the fluoride anion was studied computationally. The catalytic activity of the [Rh(CNC−NDI)(CO)]⁺ complex was tested in the cycloisomerization of alkynoic acids, where it is observed that the activity of the catalyst can be modulated between four levels of activity, which correspond to i) the use of the unmodified catalyst, ii) catalyst+coronene, iii) catalyst+2 equivalents of fluoride, and iv) catalyst+5 equivalents of fluoride.     

Induction-driven stabilization of the anion-π interaction in electron-rich aromatics as the key to fluoride inclusion in imidazolium-cage receptors

Intermolecular interactions that involve aromatic rings are key processes in both chemical and biological recognition. It is common knowledge that the existence of anion-π interactions between anions and electron-deficient (π-acidic) aromatics indicates that electron-rich (π-basic) aromatics are expected to be repulsive to anions due to their electron-donating character. Here we report the first concrete theoretical and experimental evidence of the anion-π interaction between electron-rich alkylbenzene rings and a fluoride ion in CH(3)CN. The cyclophane cavity bridged with three naphthoimidazolium groups selectively complexes a fluoride ion by means of a combination of anion-π interactions and (C-H)(+)···F(-)-type ionic hydrogen bonds. (1)H NMR, (19)F NMR, and fluorescence spectra of 1 and 2 with fluoride ions are examined to show that only 2 can host a fluoride ion in the cavity between two alkylbenzene rings to form a sandwich complex. In addition, the cage compounds can serve as highly selective and ratiometric fluorescent sensors for a fluoride ion. With the addition of 1 equiv of F(-), a strongly increased fluorescence emission centered at 385 nm appears at the expense of the fluorescence emission of 2 centered at 474 nm. Finally, isothermal titration calorimetry (ITC) experiments were performed to obtain the binding constants of the compounds 1 and 2 with F(-) as well as Gibbs free energy. The 2-F(-) complex is more stable than the 1-F(-) complex by 1.87 kcal mol(-1), which is attributable to the stronger anion-π interaction between F(-) and triethylbenzene.     

A newly developed highly selective ratiometric fluoride ion sensor: spectroscopic, NMR and density functional studies

A new easy-to-synthesize chemosensor, 3,3'-bis(indolyl)-4-chlorophenylmethane (hereafter S), was designed, synthesized and employed as a selective optical chemosensor for fluoride ions.(1)H NMR and density functional studies on the system have been carried out to determine the nature of the interaction between S and X(-) (X = inorganic anions) responsible for the significant fluoride-induced changes in the absorption properties of S. The experimental results reveal that abstraction of an acidic proton of S by the fluoride ion, leading to the formation of anionic species, is responsible for the spectral changes. These changes allow signaling for the fluoride ion to detect and estimate the concentration of fluoride ion present even at the submicromolar level, accurate up to 2 μM. Calculations of the transition energies of S, S(-), and S···F(-) (hydrogen bonded complex) show that only S(-) is responsible for the long-wavelength absorption band in the presence of F(-).     

A novel three-coordinate organoboron derivative: synthesis, photophysical property and ion recognization

A new push-pull type compound trans-4-dimesitylboryl-4′-(1,4,7,10-tetraoxa-13-aza-cyclopentadecyl) stilbene (DBTS) with aza-15-crown-5 as a donor and a three-coordinate organoboron as an acceptor was designed and synthesized. DBTS shows intense fluorescence in a wide spectra range in different solvents. Furthermore, DBTS can recognize fluoride anions with a high selectivity for the special Lewis acid-base interaction between a trivalent boron atom and a fluoride anion. As a typical alkaline earth cations receptor, DBTS also showed spectral changes upon their addition.     

Thermal decomposition of carbon precursors in decorated AFI zeolite crystals

Mass spectrometry and thermogravimetric analysis are used to explore the thermal decomposition of carbon precursors (primarily the tripropylammonium cations) occluded within AlPO(4)-5 (AFI) crystals prepared in various media (in the presence or absence of F(-) ions, Si(4+) substations of P(5+)), with the aim to fabricate high-density 0.4-nm single-walled carbon nanotubes (SWNTs). It has been found that the tripropylammonium precursors exist in the as-synthesized crystals in three different forms: tripropylammonium fluoride, hydroxide, and tripropylammonium cation compensating for the negative charge of the framework. The latter is bonded to the framework by strong chemical interaction and its decomposition takes place by a series of beta-elimination reactions to give propylene and ammonia, with the stepwise formation of dipropylammonium and n-propylammonium cations. The 0.4-nm SWNTs filling density was found to be higher than that resulting from the carbon precursor of tripropylammonium fluoride and hydroxide, because of the strong adsorption force of the channel walls to pyrolysate, as evidenced by the clear and strong radial breathing modes in Raman spectra.     

A new calix[4]pyrrole derivative and its anion (fluoride)/cation (mercury and silver) recognition

A new calix[4]pyrrole-based macrocycle, meso-tetramethyl-tetrakis{4-[2-(ethylthio)ethoxy]phenyl}calix[4]pyrrole, 7, has been synthesized and fully characterized. Unlike other calixpyrrole derivatives that show selective interaction with anions, calixpyrrole 7 described in the present work forms stable complexes with both metal cations and anions. The thermodynamics of complexation of this ditopic calixpyrrole derivative with metal cations (Hg2+ and Ag+) and the fluoride anion in nonaqueous solutions have been determined by titration calorimetry, and the host-guest composition has been investigated by using conductance measurements at 298.15 K. 1H NMR studies provide clear evidence about the sites of complexation of 7 with the ionic species, which show that the NH groups are taking part in the complexation of this ligand with the fluoride anion while the sulfur donor atoms are responsible for the interaction with metal cations. Using the present data on 7 and structurally related analogues (1-6), the complexation behavior is discussed comparatively from the thermodynamic point of view. Possessing four sulfur-containing pendent arms, 7 displays an enhanced hosting ability for Hg2+ in acetonitrile. As compared with 1, the calixpyrrole derivative, 7, shows a unique interaction with fluoride among the anions investigated in acetonitrile and dimethyl sulfoxide. As far as the fluoride complex is concerned, the medium effect is assessed in terms of the thermodynamics of the transfer of reactants and product from acetonitrile (reference solvent) to dimethyl sulfoxide.     

Metal fluorides form strong hydrogen bonds and halogen bonds: measuring interaction enthalpies and entropies in solution

The organometallic compound trans-(tetrafluoropyrid-2-yl)bis(triethylphosphine)-fluoronickel(II) (NiF) is shown to serve as a strong hydrogen bond and halogen bond acceptor in solution via intermolecular interactions with the fluoride ligand. The nature of the interactions has been confirmed by multinuclear NMR spectroscopy. Experimental binding constants, enthalpies, and entropies of interaction with hydrogen-bond-donor indole and halogen-bond-donor iodopentafluorobenzene have been determined by 19F NMR titration. In toluene-d8 solution indole forms a 1:1 and 2:1 complex with NiF (K1 = 57.9(3), K2 = 0.58(4)). Interaction enthalpies and entropies are -23.4(2) kJ mol-1 and -44.5(8) J mol-1 K-1, respectively, for the 1:1 complex; -14.8(8) kJ mol-1 and -53(3) J mol-1 K-1, respectively, for the 2:1 complex. In toluene-d8 solution iodopentafluorobenzene forms only a 1:1 complex (K1 = 3.41(9)) with enthalpy and entropy of interaction of -16(1) kJ mol-1 and -42(4) J mol-1 K-1, respectively. A marked solvent effect was observed for the halogen bond interaction. NMR titrations in heptane solution indicated formation of both 1:1 and 2:1 complexes of iodopentafluorobenzene with NiF (K1 = 21.8(2), K2 = 0.22(4)). Interaction enthalpies and entropies are -26(1) kJ mol-1 and -63(4) J mol-1 K-1, respectively, for the 1:1 complex; -21(1) kJ mol-1 and -83(5) J mol-1 K-1, respectively, for the 2:1 complex. There is a paucity of such experimental energetic data particularly for halogen bonds despite substantial structural data. These measurements demonstrate that halogen bonds are competitive with hydrogen bonds as intermolecular interactions and provide a suitable benchmark for theoretical calculations and quantitative input into design efforts in supramolecular chemistry and crystal engineering.     

Rotational spectroscopy and molecular structure of 1,1,2-trifluoroethylene and the 1,1,2-trifluoroethylene-hydrogen fluoride complex

Fourier transform microwave rotational spectra in the 6-22 GHz region are obtained for the complex formed between 1,1,2-trifluoroethylene and hydrogen fluoride, including the normal isotopomer, the two singly substituted 13C species, and the complex obtained with DF. A unique planar structure for the complex is determined from a combined analysis of the rotational constants derived from the spectra and atomic positions obtained using Kraitchman [Am. J. Phys. 21, 17 (1953)] substitution coordinates. Consistent with this structure, no hyperfine splitting of rotational lines due to the nuclear quadrupole coupling interaction is observed for the D-containing species. Although the primary interaction in the complex is a hydrogen-fluorine hydrogen bond, as is the case for all previously studied Lewis acid-fluoroethylene complexes, the CF2CHF-HF complex adopts a distinctly different geometry in which both the primary and secondary interactions occur between the HF molecule and a F atom and a H atom, respectively, bonded to the same carbon of CF2CHF. The 2.020(41) A hydrogen bond has hydrogen fluoride as the donor and 1,1,2-trifluoroethylene as the acceptor and forms a 109.0(13) degrees C-F...H angle. The secondary interaction between the hydrogen fluoride F atom and the H atom geminal to the acceptor F atom causes the hydrogen bond to deviate 41.6(51) degrees from linearity. Structural comparisons with analogous complexes formed with mono- and difluorinated ethylenes suggest that the primary hydrogen bond strength and the fluoroethylene fluorine atom basicity both decrease with increasing fluorine substitution. In the course of this work, it was necessary to obtain additional rotational spectra for the 1,1,2-trifluroethylene monomer and to improve the precision of the values of the structural parameters for this molecule.     

Synthesis and structure of new Schiff base derivatives obtained from 2-(formylphenyl)mercury bromide

Reactions of (2-formylphenyl)mercury(II) bromide 10 with primary amines give mono-, bis- and tris- Schiff base derivatives (11-18). Structures of the synthesized compounds show the presence of five-membered intramolecular Hg?N interaction. Luminescence studies of the compounds have been performed. Attempts to use the synthesized compounds for binding neutral donor molecules or fluoride ions were unsuccessful.     

Molecular recognition of fluoride anion: benzene-based tripodal imidazolium receptor

A benzene-based tripodal imidazolium receptor utilizing the strong (C-H)(+)...X(-) hydrogen bonding interaction between imidazolium moieties and halide anions is extensively investigated both theoretically and experimentally. Ab initio calculations predict that this receptor has a very high affinity for fluoride ion (F(-)). The association constant and free energy gain of the N-butyl receptor 2 for F(-) in acetonitrile were measured to be 2.1 x 10(5) M(-1) and -7.25 kcal/mol, respectively, showing that the receptor has a high affinity for F(-) in highly polar organic solvents.     

Hexabromide salt of a tiny octaazacryptand as a receptor for encapsulation of lower homolog halides: structural evidence on halide selectivity inside the tiny cage

Tiny azacryptand 1,4,7,10,13,16,21,24-octaazabicyclo[8.8.8]hexacosane (L) upon reaction with 48% hydrobromic acid (containing <0.05% chloride contamination) forms hexabromide salt (1). Single crystal X-ray crystallographic investigation of the hexaprotonated bromide (1) shows no guest encapsulation inside the tiny cage. This bromide salt 1 with an empty proton cage has been utilized as the receptor for encapsulation of chloride (2) and fluoride (3). Crystallographic results of mixed chloride/bromide (2) and fluoride/bromide (3) complexes of L are examined, which show monotopic recognition of chloride in the case of 2 and fluoride in the case of 3 inside the proton cage with five bromide and three water molecules outside the cavity. Single crystals obtained from an experiment on mixed anionic system (chloride and fluoride), 1 shows selective encapsulation of fluoride, which supports the formation of complex 3 and crystals obtained upon treatment of 2 with tetrabutyl ammonium fluoride also yields complex 3. In a separate reaction between L and 49% hydrobromic acid containing higher chloride contamination (<0.2%) forms chloride/bromide salt (2). ¹H NMR studies of 1 with sodium chloride and fluoride support the encapsulation of the respective anions inside the proton cage.     

CH3--MoF], [CH2=MoHF], and [CH[triple bond]MoH2F] formed by reaction of laser-ablated molybdenum atoms with methyl fluoride: persistent photoreversible interconversion through alpha-hydrogen migration and agostic interaction

Simple molybdenum methyl, carbene, and carbyne complexes, [CH3--MoF], [CH2=MoHF], and [CH[triple chemical bond]MoH(2)F], were formed by the reaction of laser-ablated molybdenum atoms with methyl fluoride and isolated in an argon matrix. These molecules provide a persistent photoreversible system through alpha-hydrogen migration between the carbon and metal atoms: The methyl and carbene complexes are produced by applying UV irradiation (240-380 nm) while the carbyne complex is depleted, and the process reverses on irradiation with visible light (lambda>420 nm). An absorption at 589.3 cm(-1) is attributed to the Mo--F stretching mode of [CH3--MoF], which is in fact the most stable of the plausible products. Density functional theory calculations show that one of the alpha-hydrogen atoms of the carbene complex is considerably bent toward the metal atom (angle-spherical HCMo=84.5 degrees ), which provides evidence of a strong agostic interaction in the triplet ground state. The calculated C[triple chemical bond]Mo bond length in the carbyne is in the range of triple-bond values in methylidyne complexes.     

A self-assembled fluoride-water cyclic cluster of [F(H2O)]4(4-) in a molecular box

We present an unprecedented fluoride-water cyclic cluster of [F(H(2)O)](4)(4-) assembled in a cuboid molecular box formed by two large macrocycles. Structural characterization reveals that [F(H(2)O)](4)(4-) is assembled by strong H-bonding interactions [OH···F = 2.684(3)-2.724(3) ?], where a fluoride anion plays the topological role of a water molecule in the classical cyclic water octamer. The interaction of fluoride was further confirmed by (19)F NMR and (1)H NMR spectroscopies, indicating the encapsulation of the anionic species within the cavity in solution. High-level DFT calculations and Bader topological analyses fully support the crystallographic results, demonstrating that the bonding arrangement in the fluoride-water cluster arises from the unique geometry of the host.     

Why does fluoride anion accelerate transmetalation between vinylsilane and palladium(II)-vinyl complex? Theoretical study

Transmetalation between palladium(II)-vinyl complex and vinylsilane was theoretically investigated with the DFT and MP2 to MP4 methods to clarify the reaction mechanism and the reasons why fluoride anion accelerates the Pd-catalyzed cross-coupling reaction between vinyl iodide and vinylsilane. This transmetalation occurs with a very large activation barrier (45.8 kcal/mol) and a very large endothermicity (25.6 kcal/mol) in the absence of fluoride anion, where the potential energy change resulting from the solvation effect is evident. This is consistent with the experimental fact that this cross-coupling reaction does not proceed well in the absence of fluoride anion. The effects of fluoride anion were investigated in three possible reaction courses. In the first course, fluorovinylsilicate anion is formed before the transmetalation, and it reacts with the palladium(II)-vinyl complex. In the second course, an iodo ligand is substituted for fluoride anion, and then the transmetalation occurs between the palladium(II)-fluoro-vinyl complex and vinylsilane. In the third course, fluoride anion attacks the Si center of vinylsilane in the transition state of the transmetalation between the palladium(II)-iodo-vinyl complex and vinylsilane. Our theoretical calculation suggests that fluorovinylsilicate anion is not formed in the case of trimethylvinylsilane. In the second and third cases, the transmetalation occurs with a moderate activation barrier (E(a)) and a considerably large exothermicity (E(exo)): E(a) = 25.3 kcal/mol and E(exo) = 5.7 kcal/mol in the second course, and E(a) = 12.7 kcal/mol and E(exo) = 24.8 kcal/mol in the third course, indicating that fluoride anion accelerates the transmetalation via the second and third reaction courses. The acceleration of transmetalation by fluoride anion is clearly interpreted in terms of the formation of a very strong Si-F bond and the stabilization of the transition state by the hypervalent Si center, which is induced by the fluoride anion. Our computational results show that hydroxide anion accelerates the transmetalation in a manner similar to that observed with fluoride anion. From these results, we predict that the electronegative anion accelerates this transmetalation because the electronegative group forms a strong covalent bond with the silyl group and facilitates the formation of the hypervalent Si center in the transition state.     

Determination of submicromolar concentrations of fluoride in biological samples

The fluorescence of a Morin-thorium complex provides a more sensitive fluoride reagent than has been previously used. It has immediate stability and a linear response to fluoride up to 50% reduction in fluorescence. The values for serum fluoride, as measured with this reagent after diffusion at room temperature, agree with those obtained with the fluoride electrode and with those predicted by the renal clearance of radioactive fluoride. The relative standard deviation when measuring 10(-6)M fluoride in 2 ml of serum is +/-10%.     

Synthesis and structure of [Fe(13)O(4)F(24)(OMe)(12)](5-): the first open-shell Keggin ion

The reaction between ferric fluoride trihydrate and pyridine in hot methanol produced yellow-brown crystals of (PyH)5.[Fe13O4F24(OMe)12].4H2O.CH3OH. The anionic complex [Fe13O4F24(OMe)12]5- (1), which has a full Td symmetry, is the first example of an open-shell Keggin ion consisting of 13 high-spin d5 iron(III) atoms. The central, tetrahedral {FeO4} unit in 1 is surrounded by 12 octahedral iron atoms, which are bridged by methoxide oxygen atoms and fluoride ligands. In addition, each of the 12 iron atoms is coordinated to a terminal fluoride ligand with an Fe-F distance of 1.846(3) A. Magnetic susceptibility studies indicate strong exchange interactions between the iron atoms, the mueff value of 19.3 muB at 300 K being significantly lower than that expected for thirteen uncoupled S = 5/2 centers.     

A new fluoride selective fluorescent as well as chromogenic chemosensor containing a naphthalene urea derivative

A new naphthalene derivative containing a urea group at the 1,8-position of naphthalene was synthesized and showed a unique absorption and fluorescence peak with a fluoride ion. Calculations suggested that a new peak was attributed to the increased anion character of urea nitrogen due to the strong interaction of the fluoride and N-H protons.     

2,6-二苯甲酰胺吡啶盐酸盐选择性识别氟离子

制备了2,6-二苯甲酰胺吡啶盐酸盐（3）, 利用荧光发射光谱和紫外可见吸收光谱研究了3对氟离子的选择性识别作用,氟离子可使3发生明显的荧光淬灭作用,并且溶液颜色也由无色变成黄绿色,实现了裸眼识别。利用Job法测定3与氟离子的结合比,发现主体化合物与氟离子形成1:1型络合物。采用Gaussian03软件模拟了3以及3与氟离子形成络合物的分子结构,发现3与氟离子通过(N-H) + ?F-和N-H ?F-两种氢键作用结合, 其中(N-H) + ?F-的氢键作用能力更强,增强了3对氟离子的识别能力。     

Photophysical and density functional studies of the interaction of a flavone derivative with the halides

The synthesis, photophysical behavior, and anion-sensing ability of a fluorescent molecular system, N-(3-methoxy-4-oxo-2-phenyl-4H-chromen-7-yl)-benzamide (1H), designed and developed with a view to sensing fluoride ions, are reported. NMR and density functional studies on the system have been carried out to determine the nature of the interaction between 1H and X- (X = halogen atom) responsible for fluoride-induced dramatic changes in the absorption and emission properties of 1H. The color change of 1H, which can be observed by the naked eye, is found specific to fluoride ion; it is unaffected by the presence of a large excess of Cl-, Br-, and I-, thus rendering 1H as a selective fluoride ion sensor in micromolar concentration in the visible region. The changes in the fluorescence behavior of 1H, specifically, the formation of an additional long-wavelength emission band in the presence of fluoride ion, allow ratiometric fluorescence signaling of the fluoride ion as well. The results suggest that abstraction of the acidic proton of 1H by the F- leading to the formation of 1- is responsible for the spectral changes that allow signaling of the F-. Density functional calculations of the optimized geometrical parameters and charge densities of the 1H...halide complexes confirm the proton abstraction mechanism of the signaling of F-. Calculations of the transition energies of the 1H, 1-, and 1H...F- (hydrogen-bonded complex) show that only 1- is responsible for the long-wavelength absorption and emission band observed in the presence of F-.