Mechanism of aromatic hydroxylation by an activated FeIV=O core in tetrahydrobiopterin-dependent hydroxylases

The chemical pathways leading to the hydroxylated aromatic amino acids in phenylalanine and tryptophan hydroxylases have been investigated by means of hybrid density functional theory. In the catalytic core of these non-heme iron enzymes, dioxygen reacts with the pterin cofactor and is likely to be activated by forming an iron(IV)=O complex. The capability of this species to act as a hydroxylating intermediate has been explored. Depending on the protonation state of the ligands of the metal, two different mechanisms are found to be energetically possible for the hydroxylation of phenylalanine and tryptophan by the high-valent iron-oxo species. With a hydroxo ligand the two-electron oxidation of the aromatic ring passes through a radical, while an arenium cation is involved when a water replaces the hydroxide. After the attack of the activated oxygen on the substrate, it is also found that a 1,2-hydride shift (known as an NIH shift) generates a keto intermediate, which can decay to the true product through an intermolecular keto-enol tautomerization. The benzylic hydroxylation of 4-methylphenylalanine by the Fe(IV)=O species has also been investigated according to the rebound mechanism. The computed energetics lead to the conclusion that Fe(IV)=O is capable not only of aromatic hydroxylation, but also of benzylic hydroxylation.     

Mechanism of dioxygen cleavage in tetrahydrobiopterin-dependent amino acid hydroxylases

The reaction mechanism for the formation of the hydroxylating intermediate in aromatic amino acid hydroxylases (i.e., phenylalanine hydroxylase, tyrosine hydroxylase, tryptophan hydroxylase) was investigated by means of hybrid density functional theory. These enzymes use molecular oxygen to hydroxylate both the tetrahydrobiopterin cofactor and the aromatic amino acid. A mechanism is proposed in which dioxygen forms a bridging bond between the cofactor and iron. The product is an iron(II)-peroxy-pterin intermediate, and iron was found to be essential for the catalysis of this step. No stable intermediates involving a pterin radical cation and a superoxide ion O(2)(-) were found on the reaction pathway. Heterolysis of the O-O bond in the iron(II)-peroxy-pterin intermediate is promoted by one of the water molecules coordinated to iron and releases hydroxypterin and the high-valent iron oxo species Fe(IV)=O, which can carry out subsequent hydroxylation of aromatic rings. In the proposed mechanism, the formation of the bridging C-O bond is rate-limiting in the formation of Fe(IV)=O.     

Selective Aromatic Hydroxylation with Dioxygen and Simple Copper Imine Complexes

The formation of a bis(μ‐oxido)dicopper complex with the ligand 2‐(diethylaminoethyl)‐6‐phenylpyridine (PPN) and its subsequent hydroxylation of the pendant phenyl group (studied earlier by Holland et al., Angew. Chem. Int. Ed.­ 1999 , 38, 1139–1142) has been reinvestigated to gain a better understanding of such systems in view of the development of new synthetic applications. To this end, we prepared a simple copper imine complex system that also affords selective o‐hydroxylation of aromatic aldehydes by using dioxygen as the oxidant: Applying the ligand N′‐benzylidene‐N,N‐diethylethylenediamine (BDED), salicylaldehyde was prepared in good yields and we show that this reaction also occurs through an intermediate bis‐μ‐oxido copper complex. The underlying reaction mechanism for the PPN‐supported complex was studied at the BLYP‐D/TZVP level of density functional theory and the results for representative stationary points along reaction paths of the BDED‐supported complex reveal a closely related mechanistic scenario. The results demonstrate a new facile synthetic way to introduce OH groups into aromatic aldehydes.     

Enantioselective Synthesis of Piperidines through the Formation of Chiral Mixed Phosphoric Acid Acetals: Experimental and Theoretical Studies

An enantioselective intramolecular chiral phosphoric acid‐catalyzed cyclization of unsaturated acetals has been utilized for the synthesis of functionalized chiral piperidines. The chiral enol ether products of these cyclizations undergo subsequent in situ enantioenrichment through acetalization of the minor enantiomer. A new computational reaction exploration method was utilized to elucidate the mechanism and stereoselectivity of this transformation. Rather than confirming the originally postulated cyclization proceeding directly through a vinyl oxocarbenium ion, simulations identified an alternative two‐step mechanism involving the formation of a mixed chiral phosphate acetal, which undergoes a concerted, asynchronous S_N2′‐like displacement to yield the product with stereoselectivity in agreement with experimental observations.     

The E2 state of FeMoco: Hydride Formation versus Fe Reduction and a Mechanism for H2 Evolution

The iron-molybdenum cofactor (FeMoco) is responsible for dinitrogen reduction in Mo nitrogenase. Unlike the resting state, E₀, reduced states of FeMoco are much less well characterized. The E₂ state has been proposed to contain a hydride but direct spectroscopic evidence is still lacking. The E₂ state can, however, relax back the E₀ state via a H₂ side-reaction, implying a hydride intermediate prior to H₂ formation. This E₂→E₀ pathway is one of the primary mechanisms for H₂ formation under low-electron flux conditions. In this study we present an exploration of the energy surface of the E₂ state. Utilizing both cluster-continuum and QM/MM calculations, we explore various classes of E₂ models: including terminal hydrides, bridging hydrides with a closed or open sulfide-bridge, as well as models without. Importantly, we find the hemilability of a protonated belt-sulfide to strongly influence the stability of hydrides. Surprisingly, non-hydride models are found to be almost equally favorable as hydride models. While the cluster-continuum calculations suggest multiple possibilities, QM/MM suggests only two models as contenders for the E₂ state. These models feature either i) a bridging hydride between Fe₂ and Fe₆ and an open sulfide-bridge with terminal SH on Fe₆ ( E₂-hyd ) or ii) a double belt-sulfide protonated, reduced cofactor without a hydride ( E₂-nonhyd ). We suggest both models as contenders for the E₂ redox state and further calculate a mechanism for H₂ evolution. The changes in electronic structure of FeMoco during the proposed redox-state cycle, E₀→E₁→E₂→E₀, are discussed.     

Theoretical Investigation of the OH.‐Initiated Oxidation of Benzaldehyde in the Troposphere

A mechanistic and kinetic study of the OH^.‐initiated oxidation of benzaldehyde is carried out using quantum chemical methods and classical transition state theory. We calculate the rate constant for this reaction within the temperature range of 200–350 K at atmospheric pressure. All possible hydrogen abstraction and OH^. addition channels are considered and branching ratios are obtained. Tunneling corrections are taken into account for abstraction channels, assuming unsymmetrical Eckart barriers. The aldehydic abstraction is by far the most important reaction channel within the entire range of temperatures studied, especially at room temperature and lower—the temperatures relevant to atmospheric chemistry. The relative importance of all the other possible channels increases slightly with temperature. Branching ratios show that addition at the ring and abstraction of an ortho hydrogen contribute about 1 % each at about 300 K, while the branching ratio for the main reaction decreases from 99 % at 200 K to 93 % at 350 K. The results are compared with available experimental measurements.     

A density functional theory study on the electrocyclization of 1,2,4,6-heptatetraene analogues: converting a pericyclic to a pseudopericyclic reaction

A comprehensive B3LYP/6-31+G* study on the electrocyclization of 1,2,4,6-heptatetraene analogues was conducted. Starting from the cyclization of (2Z)-2,4,5-hexatrienal, a pericyclic disrotatory process favored by the assistance of a electron lone pair, we incorporated small modifications in its molecular structure to obtain a truly pseudopericyclic process. To this purpose electronegative atoms (fluorine and nitrogen) were added to give a more electrophilic character on the carbon atom which is attacked by the electron lone pair of the oxygen atom. The complete pathway for each reaction was determined, and changes in magnetic properties were monitored with a view to estimating the aromatization associated with each process. This information, together with the energetic and structural results, allowed us to classify the reactions as pseudopericyclic or pericyclic. Among all studied reactions only one was a truly pseudopericyclic process and another was a borderline case. The features of this unequivocally pseudopericyclic case were analyzed in depth.     

Photophysical Properties of Benzoylgermane and para‐Substituted Derivatives: Substituent Effects on Electronic Transitions

In the present study, a selection of basic substitution patterns on benzoyl(trimethyl)germane was investigated using time‐dependent density‐functional theory (TDDFT) to explore the influence on the stability and on the relative order of the lowest excited electronic states. The theoretical results are in agreement with absorption and fluorescence measurements. We show that electron‐withdrawing groups decrease the energetic level of the lowest singlet and triplet state relative to the electron‐pushing systems resulting in red‐shifted radiative transitions (fluorescence). In the first triplet state electron‐withdrawing groups lead to an increased dissociation barrier and a close approach with the singlet ground state before the transition state in the triplet state is reached, favoring radiationless ground‐state recovery. The results are also in good agreement with empirical concepts of organic chemistry, therefore providing simple rules for synthetic strategies towards tuning the excited‐state properties of benzoylgermanes.     

Criteria for the elucidation of the pseudopericyclic character of the cyclization of (Z)-1,2,4,6-heptatetraene and its heterosubstituted analogues: magnetic properties and natural bond orbital analysis

The electrocyclization of heterosubstituted derivatives of (Z)-1,2,4,6-heptatetraene, (2Z)-2,4,5-hexatrien-1-imine and (2Z)-2,4,5-hexatrienal exhibit some features which suggest a pseudopericyclic mechanism. In order to examine this, a comprehensive study including the determination of magnetic properties to estimate aromaticity and an NBO analysis throughout the reaction path was conducted. The cyclization of 5oxo-2,4-pentadienal, a process of unequivocal pseudopericyclic nature, was studied for comparison. The results suggest that, although the lone electron pair on the heteroatom in the heptatetraene derivatives seemingly plays a crucial role in the reaction mechanism, it does not suffice to deprive the reaction from the essential features of a pericyclic disrotatory electrocyclization.     

A quantum chemical study of racemization pathways in substituted chrysene derivatives

The potential-energy surfaces of 5,11-disubstituted 6,12-dimethoxychrysene and chrysene-6,12-dione derivatives were investigated by means of density functional calculations. We report relative energies of all conformers and an identification of the racemisation pathways of the chiral equilibrium structures. By analysis of homodesmotic reactions we were able to obtain an estimate for the strain energy of the substituted compounds. This strain energy can be used as a means of measuring the steric effects exerted by the substituents.     

Kinetic study on the reaction of OH radical with dimethyl sulfide in the absence of oxygen.

A variational transition-state theory calculation for the reaction of OH radical with dimethyl sulfide (DMS) in the absence of oxygen is presented. The potential energy surface was previously studied and the effects of different levels of theory were analyzed. Here we propose a kinetic model for the atmospheric DMS oxidation in the absence of oxygen. For the first time, addition of OH to DMS and CH(3)SOH elimination channels are connected, and the equilibrium approximation in the high-pressure regime is applied to the DMS-OH adduct in the absence of oxygen. Both low- and high-pressure limits are considered to analyze the two different mechanisms of the H-abstraction channel, and two different kinetic approaches are applied to study them. The rate constants for the addition-elimination and H-abstraction routes are compared and the branching ratios are also studied. Tunneling contributions and kinetic isotope effects are analyzed. We conclude, in agreement with experimental observations, that in the absence of oxygen DMS oxidation takes place via H-abstraction with a branching ratio of 1.0 at atmospheric temperatures.