Dissociative electron attachment to polyatomic molecules: Ion kinetic energy measurements

Dissociative electron attachment to SO₂, NO₂, NF₃ and H₂O₂ is studied in terms of the kinetic energies of the dominant fragment ions. The O^? data from SO₂ show that the two major resonances at 4.6 and 7.2 eV respectively have the same dissociation limit. Similarly, the resonances at 1.8 and 3.5 eV in the O^? channel in NO₂ appear to have same dissociation limit of NO (X ²Π) + O^?, while the resonance at 8.5 eV appears to dissociate to give NO (a ⁴Π_i) along with O^?. We find considerable internal excitation of the neutral fragments in all these cases along with that of NF₃, whereas the negative ion resonance in H₂O₂ appears to fragment almost like a diatomic system with very little internal excitation of the OH and OH^? fragments.     

Laser-induced low energy electron diffraction in aligned molecules

We measured the photoelectron spectra and angular distributions of partially aligned N(2), O(2), and CO(2) in the rescattering plateau of above threshold ionization (ATI). The measured ATI electrons have relatively low collision energies (<15 eV). The photoelectron angular distributions (PAD) show clearly species and energy dependence. A simple two-center interference model was not able to consistently retrieve structural properties. We conclude that due to the interplay between the electrons and rescattering potential, the molecular structural information is obscured and cannot be extracted conveniently. However, the sensitivity of the PAD to the scattering potential in laser-induced electron diffraction promises a practical tool for studying electron-ion scattering dynamics.     

Measurement of the translational excess energy in dissociative electron attachment processes

The translational energies of negative ion fragments arising from dissociative electron attachment to some halogenated methanes have been measured as a function of the total excess energies over the resonances, using a time-of-flight technique. For some systems, the decay of the negative-ion intermediate shows a strong non-statistical behaviour.     

A mechanism of electron attachment to small clusters

Van der Waals clusters of various molecules were collisionally ionized by high-Rydberg rare gas atoms and slow electrons. Negative cluster ions thus produced were detected by mass spectroscopy. The ionization mechanism were investigated by measurements of the size- and the energy-dependences of the electron attachment cross sections.     

Kinetic energy release in fragmentation processes following electron emission: a time-dependent approach

A time-dependent approach for the kinetic energy release (KER) spectrum is developed for a fragmentation of a diatomic molecule after an electronic decay process, e.g., Auger process. It allows one to simulate the time-resolved spectra and provides more insight into the molecular dynamics than the time-independent approach. Detailed analysis of the time-resolved emitted electron and KER spectra sheds light on the interrelation between wave packet dynamics and spectra.     

Functional group dependent dissociative electron attachment to simple organic molecules

Dissociative electron attachment (DEA) cross sections for simple organic molecules, namely, acetic acid, propanoic acid, methanol, ethanol, and n-propyl amine are measured in a crossed beam experiment. We find that the H(-) ion formation is the dominant channel of DEA for these molecules and takes place at relatively higher energies (>4 eV) through the core excited resonances. Comparison of the cross sections of the H(-) channel from these molecules with those from NH(3), H(2)O, and CH(4) shows the presence of functional group dependence in the DEA process. We analyze this new phenomenon in the context of the results reported on other organic molecules. This discovery of functional group dependence has important implications such as control in electron induced chemistry and understanding radiation induced damage in biological systems.     

The electron swarm method as a tool to investigate multi-body electron attachment processes

The electron swarm method has been used for the investigation of multi-body thermal electron attachment process. Ethylene, carbon dioxide and their mixtures were used as carrier gases. The rate constant for the reaction of thermal electrons with SF₆ has been measured and found to be (2.5±0.2) × 10^-7 cm³·mol^-1·s^-1. The mechanism and kinetics of thermal electron capture by N₂O was investigated in the mixtures with C₂H₄ and CO₂. A mechanism involving neutral van der Waals molecules (N₂O·CO₂) has been proposed and the rate constants calculated to be 1.9 × 10^-10 cm³·mol^-1·s^-1 for the formation of (N₂O·CO₂) and 1.8 × 10^-30 cm⁶·mol^-2·s^-1 for the three-body reaction with CO₂ as a stabilizing agent.     

Specific features of the resonant electron attachment to the chlorodibenzo-p-dioxin molecules

The processes of resonant dissociative electron attachment to the molecules of dibenzo-p-dioxin and its chlorinated derivatives containing one to four chlorine atoms (totally eight compounds) were investigated. It was established that 2,3,7-trichlorodibenzo-p-dioxin; 1,2,3,4-tetrachlorodibenzo-p-dioxin; 1,3,7,8-tetrachlorodibenzo-p-dioxin, and 2,3,7,8-tetrachlorodibenzo-p-dioxin molecules are chatacterized by positive electron affinities. At electron energies below 2 eV, the electron attachment is caused by the shape resonances. Based on the energy correlation between the negative ion resonance peaks at 3—4 eV and the UV band maxima, it was suggested that electron attachment in this energy region occurs by the mechanism of inter-shell resonance with the molecular singlet-excited states as parents. The possibility for the rearrangement processes resulting in oxy-anionic structures to occur is substantiated.     

Competition between reactivity and relaxation in free electron attachment to molecules

The reactivity of the C₆F₅X (X=F, Cl, Br, I) molecules following low energy (0–15 eV) electron attachment is studied in the gas phase under single collision conditions, free molecular clusters and condensed molecules by means of crossed beams and surface experiments. All four molecules exhibit a very prominent resonance for low energy electron attachment (<1 eV, attachment cross section >10⁻¹⁴ cm²). Under collision free conditions thermal electron capture generates long lived molecular parent anions C₆F₅X^−*. Along the line Cl, Br, I dissociation into X⁻+C₆F₅ and X+C₆F₅-increasingly competes until for X=1 only chemical fragmentation is observed on the mass spectrometric time scale. In free molecular clusters chemical fragmentation is quantitatively quenched at low energies in favour of associative attachment yielding undissociated, relaxed ions (C₆F₅X)⁻ _n,n≥1. A further dissociative resonance at 6.5 eV in C₆F₅Cl is considerably enhanched in clusters. If these molecules are finally condensed on a solid surface, one observes a prominent Cl⁻ desorption resonance at 6.5 eV. While the quantitative quenching of the chemical reactivity at low energies is due to the additional possibilities of energy dissipation under aggregation, the enhanched reactivity at 6.5 eV is interpreted by the conversion of a core excited open channel resonance in single molecules into a closed channel (Feshbach) resonance when it is coupled to environmental molecules.     

Energy exchanges following very low energy electron attachment to neat CS2 and CS2-containing clusters

We have studied electron transfer from state-selected Rydberg atoms to (CS₂) _N and CS₂(Ar) _N clusters and compared the results to Rydberg electron transfer to isolated CS₂ molecules. At large Rydberg principal quantum numbers (n>20), the influence of the positive ionic core becomes negligible and we are able to directly investigate the competition between electronic autodetachment of the anions and intracluster energy exchanges between the anions and their environment. We show that argon atoms are unable to achieve efficient internal energy exchanges in heterogeneous clusters as compared to the high efficiency of CS₂ molecules in homogeneous clusters.     

The possibility of the decomposition of 2'-deoxyribose moiety of thymidine induced by the low energy electron attachment

To evaluate the possibility of the decomposition of 2-deoxyribose moiety of thymidine induced by low energy electrons (LEE) attachment, the transition states and the energy barriers of the bond breaking processes of the ribose of the nucleoside have been studied theoretically by applying the density functional theory with the double zeta basis sets (DZP++). The energy barriers for the breakage of the C-C bonds (C(1')-C(2'), C(2')-C(3'), C(3')-C(4'), and C(4')-C(5')) of the ribose group of the radical anion of thymidine are found to be high (ca. 42-57 kcal/mol). The total energies of the C-C bond-broken products are significantly higher than that of the radical anion dT(*-). The decomposition of dT(*-) through the C-C bond rupture is unlikely to take place. The rupture of the C(1')-O(4') bond of dT(*-) needs an activation energy as low as 10.4 kcal/mol. However, the reversed reaction (C(1')-O(4') bond formation) needs the activation energy low as 0.3 kcal/mol. Therefore, the intermediate product LM1(C1')-(O4') is unlikely to be stable and the C(1')-O(4') bond-broken is not favored. The activation energy of the C(4')-O(4') bond rupture process amounts to 20.5 kcal/mol. The total energy of the C(4')-O(4') bond broken product is about 6.5 kcal/mol lower than that of the reactant dT(*-). The subsequent N1-glycosidic bond breaking process is found to have a very low energy barrier. Therefore, the LEE-induced base release through the C(4')-O(4') bond rupture might be a possible pathway.     

On the structure of negative ions formed by dissociative electron attachment by monochlorophenol molecules

The energetics of negative ion formation by resonant dissociative electron attachment by o-, m-, and p-chlorophenol molecules was studied. The structures of some fragment ions and their neutral partners were established. Hidden rearrangement processes leading to the formation of oxy anions by the detachment of chlorine atoms from molecular ions were found. The O—H bond dissociation energies for o-, m-, and p-chlorophenol molecules were 3.74±0.11, 3.72±0.17, and 3.94±0.11 eV, respectively.     

The energetics of resonant dissociative electron attachment to molecules of five-membered heterocyclic compounds

The thermochemistry of resonant dissociative electron attachment processes for furan, thiophene, selenophene, and pyrrole molecules has been studied. The structures of the dissociation products originating from negative molecular ions at energies ranging from 2 to 6 eV have been established using the measured appearance energies of fragment ions and the known thermodynamic functions of radical and molecular dissociation products. Heats of formation and electron affinities for some radicals and molecules have been assessed by calculations and estimated experimentally. It has been concluded that the majority of the fragment ions are formedvia rearrangement processes in molecular or fragment ions.

     

The dependence of low-energy electron attachment to CF3Br on electron and vibrational energy

In a joint experimental and theoretical effort, we have studied dissociative electron attachment (DEA) to the CF3Br molecule at electron energies below 2 eV. Using two variants of the laser photoelectron attachment method with a thermal gas target (T(G) = 300 K), we measured the energy dependent yield for Br- formation over the range E = 3-1200 meV with resolutions of about 3 meV (E < 200 meV) and 35 meV. At the onsets for excitation of one and two quanta for the C-Br stretching mode nu3, downward cusps are detected. With reference to the recommended thermal (300 K) attachment rate coefficient k(A)(CF3Br) = 1.4 x 10(-8) cm3 s(-1), absolute cross sections have been determined for Br- formation. In addition, we studied Br- and (CF3Br)Br- formations with a seeded supersonic target beam (10% CF3Br in helium carrier gas, with a stagnation pressure of 1-4 bars and nozzle temperatures of 300 and 600 K) and found prominent structure in the anion yields due to cluster formation. Using the microwave pulse radiolysis swarm technique, allowing for controlled variation of the electron temperature by microwave heating, we studied the dependence of the absolute DEA rate coefficient on the mean electron energy E over the range of 0.04-2 eV at gas temperatures T(G) ranging from 173 to 600 K. For comparison with the experimental results, semiempirical resonance R-matrix calculations have been carried out. The input for the theory includes the known energetic and structural parameters of the neutral molecule and its anion; the parameters of the resonant anion curves are chosen with reference to the known thermal rate coefficient for the DEA process. For the gas temperature T(G) = 300 K, good overall agreement of the theoretical DEA cross section with the experimental results is observed; moreover, rate coefficients for Br- formation due to Rydberg electron transfer, calculated with both the experimental and the theoretical DEA cross sections, are found to agree with the previously reported absolute experimental values. At T(G) = 300 K, satisfactory agreement is also found between the calculated and experimental attachment rate coefficients for mean electron energies E = 0.04-2 eV. The strong increase of the measured rate coefficients with rising gas temperature, however, could be only partially recovered by the R-matrix results. The differences may result from the influence of thermal excitations of other vibrational modes not included in the theory.     

Mass spectral fragmentation of thioesters. 1—Identification of low energy,slow processes

A variety of thiol and thion esters, including acetates and benzoates with n-butyl and β-phenethyl alkyl groups, have been studied by electron impact mass spectrometry. Several rearrangement ions were documented and their persistence in low voltage and field ion spectra demonstrated. Among the significant ions found in the rich thion spectra, the most general requires O to S rearrangement of the alkyl group and subsequent cleavage to yield acyl ions (CH₃CO or PhCO). This process is more important in longer chain compounds than in the methyl and ethyl homologues studied previously.     

Dissociative electron attachment to triflates

Gas phase studies of dissociative electron attachment to simple alkyl (CF(3)SO(3)CH(3)) and aryl (C(6)H(5)SO(3)CF(3) and CF(3)SO(3)C(6)H(4)CH(3)) triflates, model molecules of nonionic photoacid generators for modern lithographic applications, were performed. The fragmentation pathways under electron impact below 10 eV were identified by means of crossed electron-molecular beam mass spectrometry. Major dissociation channels involved C-O, S-O, or C-S bond scissions in the triflate moiety leading to the formation of triflate (OTf(-)), triflyl (Tf(-)), or sulfonate (RSO(3)(-)) anions, respectively. A resonance leading to C-O bond breakage and OTf(-) formation in alkyl triflates occurred at electron energies about 0.5 eV lower than the corresponding resonance in aryl triflates. A resonance leading to S-O bond breakage and Tf(-) formation in aryl triflates occurred surprisingly at the same electron energies as C-O bond breakage. In case of alkyl triflates S-O bond breakage required 1.4 eV higher electron energies to occur and proceeded with substantially lower yields than in aryl triflates. C-S bond scission occurred for all presently studied triflates at energies close to 3 eV.     

Dissociative electron attachment to gas-phase glycine

By using a high-resolution electron energy monochromator low-energy electron attachment to gas-phase glycine (H₂NCH₂COOH, or G) has been studied by means of mass spectrometric detection of the product anions. In the same way as for several other biologically relevant molecules no stable parent anion was formed by free electron attachment. The largest dissociative electron attachment (DEA) cross-section, approximately 5×10^–20 m², was observed for (G–H)^–+H at an electron energy of 1.25 eV. Glycine and formic acid (HCOOH) have several common features, because a precursor ion can be characterized by electron attachment to the unoccupied * orbital of the –COOH group. At higher incident electron energies several smaller fragment anions are formed. Except for H^–, which could not be observed in this study, there was good agreement with an earlier investigation by Gohlke et al.     

Chemogenomics and parasitology: small molecules and cell-based assays to study infectious processes

Infectious diseases caused by protozoan parasites--malaria, sleeping sickness, leishmaniasis, Chagas' disease, toxoplasmosis--remain chronic problems for humanity. We lack vaccines and have limited drug options effective against protozoa. Research into anti-protozoan drugs has accelerated with improved in vitro cultivation methods, enhanced genetic accessibility, completed genome sequences for key protozoa, and increased prominence of protozoan diseases on the agendas of well-resourced public figures and foundations. Concurrent advances in high-throughput screening (HTS) technologies and availability of diverse small molecule libraries offer the promise of accelerated discovery of new drug targets and new drugs that will reduce disease burdens imposed on humanity by parasitic protozoa. We provide a status report on HTS technologies in hand and cell-based assays under development for biological investigations and drug discovery directed toward the three best-characterized parasitic protozoa: Trypanosoma brucei, Plasmodium falciparum, and Toxoplasma gondii. We emphasize cell growth assays and new insights into parasite cell biology speeding development of better cell-based assays, useful in primary screens for anti-protozoan drug leads and secondary screens to decipher mechanisms of action of leads identified in growth assays. Small molecules that interfere with specific aspects of protozoan biology, identified in such screens, will be valuable tools for dissecting parasite cell biology and developing anti-protozoan drugs. We discuss potential impacts on drug development of new consortia among academic, corporate, and public partners committed to discovery of new, effective anti-protozoan drugs.