Synthesis of Deoxynucleoside Triphosphates that Include Proline,Urea, or Sulfonamide Groups and Their Polymerase Incorporation into DNA

To expand the chemical array available for DNA sequences in the context of in vitro selection, I present herein the synthesis of five nucleoside triphosphate analogues containing side chains capable of organocatalysis. The synthesis involved the coupling of L ‐proline‐containing residues (dU^tPTP and dU^cPTP), a dipeptide (dU^FPTP), a urea derivative (dU^BpuTP), and a sulfamide residue (dU^BsTP) to a suitably protected common intermediate, followed by triphosphorylation. These modified dNTPs were shown to be excellent substrates for the Vent (exo^?) and Pwo DNA polymerases, as well as the Klenow fragment of E. coli DNA polymerase I, although they were only acceptable substrates for the 9°N_m polymerase. All of the modified dNTPs, with the exception of dU^BpuTP, were readily incorporated into DNA by the polymerase chain reaction (PCR). Modified oligonucleotides efficiently served as templates for PCR for the regeneration of unmodified DNA. Thermal denaturation experiments showed that these modifications are tolerated in the major groove. Overall, these heavily modified dNTPs are excellent candidates for SELEX.     

Luminescent Ruthenium(II) Polypyridyl Complexes as Nonviral Carriers for DNA Delivery

Two new luminescent ruthenium(II) polypyridyl complexes, [Ru(bpy)₂(tpt‐phen)]Cl₂ ( 1 ; bpy=2,2′‐bipyridine, tpt‐phen=triptycenyl‐1,10‐phenanthroline) and [Ru(phen)₂(tpt‐phen)]Cl₂ ( 2 ; phen=1,10‐phenanthroline), have been developed as potential nonviral vectors for DNA delivery. Photophysical and electrochemical properties of the complexes have been investigated and corroborated with electronic structure calculations. DNA condensation by these complexes has been investigated by UV/Vis and emission spectroscopy, circular dichroism spectroscopy, atomic force microscopy, dynamic light scattering, confocal microscopy, and electrophoretic mobility studies. These complexes interact with DNA and efficiently condense DNA into globular nanoparticles that are taken up efficiently by HeLa cells. DNA cleavage inability and biocompatibility of complexes have been explored. Both complexes have good gene transfection abilities.     

DHP和SWCNTs促进[Ru(bpy)2tatp]3+/2+在ITO上的电化学组装

应用循环伏安法和微分脉冲伏安法研究了[Ru(bpy)2tatp]3+/2+(bpy=2,2′-联吡啶, tatp=1,4,8,9-四氮三联苯)在ITO表面上的电化学组装及双十六烷基磷酸盐(DHP)和单壁碳纳米管(SWCNTs)对其组装效果的影响. 研究结果表明, [Ru(bpy)2tatp]2+在ITO电极上1.057 V(vs. Ag/AgCl)电位下呈现出清晰的扩散控制峰. 随着连续伏安扫描次数的增多, 微分脉冲伏安图逐渐呈现出明显的吸附控制峰. 当DHP浓度在0.05~0.22 mmol/L区间内时, 不管有无SWCNTs存在, DHP均能增强[Ru(bpy)2tatp]2+在缓冲溶液中的扩散系数和促进其在ITO上的电化学组装, 而SWCNTs在其中起减弱作用. 讨论了DHP和SWCNTs参与的[Ru(bpy)2tatp]3+/2+在ITO上的电化学组装机理.     

DNA与金属锇配合物相互作用的表面电化学研究

采用自己建立的DNA表面电化学研究微量方法, 研究了单双链DNA与两种锇配合物(联吡啶锇和二氯菲咯啉锇)的相互作用. 研究发现, 两种锇配合物都是通过静电作用与DNA结合, 其作用方式不受溶液离子强度的影响. 并计算得到了联吡啶锇和二氯菲咯啉锇与dsDNA和ssDNA相互作用的多个热力学和动力学参数, 如结合常数K_3＋或K_2＋, 结合常数比K_3＋/K_2＋, 离子强度为零时的极限比 , 结合自由能ΔG_b, 解离速度常数k, 结合位点数s.     

M(bpy)2+3(M=Fe,Ru,Os)电子结构与相关性质

报导了对配合物(M=Fe,Ru,Os)的量子化学密度泛函(DFT)法研究的结果.在B3LYP/LanL2DZ方法与基组的水平上进行计算,探讨的电子结构特征及相关性质,特别是中心原子对配合物的配位键长、光谱性质、电荷布居及化学稳定性等的影响规律,为该类配合物的合成,为分析光、电、催化作用机理提供理论参考.     

Isolated supramolecular [Ru(bpy)3]-viologen-[Ru(bpy)3] complexes with trapped CB[7,8] and photoinduced electron-transfer study in nonaqueous solution

The synthesis of two supramolecular diruthenium complexes, 1 ?CB[7] and 1 ?CB[8] (CB[n]=cucurbit[n]uril), which contain the respective host CB[7] and CB[8], were synthesized and isolated. In the case of host CB[8], the desired supramolecular complex was obtained by utilizing dihydroxynapthalene as a template during the synthesis. The ¹H NMR spectra, electrochemistry, and photochemistry of these supramolecular complexes were performed in nonaqueous solution. The results show that both CB[7,8] hosts mainly bind to the linker part in solution in acetonitrile. This binding also lowers the oxidation potential of the ruthenium metal center and hinders the quenching effect by the viologen moiety. It has also been shown that external methylviologen can be included into 1 ?CB[8]. Analysis with NMR spectroscopy, electrochemistry, and photochemistry clearly shows a viologen radical dimer formation between the bound viologen and free methylviologen, thereby showing that the unique abilities of the CB[8] host can be utilized even in nonaqueous solution.     

[Ru(bpy)2tpphz]2+与Zn2+形成的双核配合物的荧光性质研究

The formation of heterobimetallic ruthenium(Ⅱ) complex was investigated by absorption and emission spectra. As an intercalator of DNA， the luminescent monometallic ruthenium(Ⅱ) complex [Ru(bpy)₂tpphz]²⁺ could coor-dinate with Zn²⁺ to form the nonluminescent heterobimetallic complex [Ru(bpy)₂(tpphz)Zn]⁴⁺. The emission in-tensity of complex decreased as increasing the amounts of Zn²⁺ and the luminescence was almost lost at the ratio of [Zn]/[Ru] of 1. After binding to DNA， the peripheral coordination site on the tpphz ligand remained accessible for Zn²⁺， the coordination occurred from the oppsite side of helix with respect to intercalated [Ru(bpy)₂tpphz]²⁺ and the nonluminescent heterobimetallic complex was formed. On the other hand， the [Ru(bpy)₂(tpphz)Zn]⁴⁺ also bound to DNA by intercalation and situated the region of the intercalated [Ru(bpy)₂tpphz]²⁺ between the base pairs of DNA. The complex looked like a molecular nut (the Zn²⁺) and bolt (the [Ru(bpy)₂tpphz]²⁺).     

Electrochemical and photosensitized redox reactions of a prussian blue film layered on a WO3/[Ru(bpy)3]2+/polymer hybrid film.

A hybrid film of WO(3)/tris(2,2'-bipyridine)ruthenium(II) ([Ru(bpy)(3)](2+))/poly(sodium 4-styrenesulfonate) (PSS) (denoted as a WRP hybrid film) was prepared as a base layer on an indium tin oxide electrode substrate by cathodic electrodeposition from a colloidal ternary solution containing peroxotungstic acid, [Ru(bpy)(3)](2+), and PSS. Prussian blue, Fe(III) (4)[Fe(II)(CN)(6)](3) (Fe(II)-Fe(III)) was cathodically electrodeposited on the WRP hybrid film from a Berlin brown (Fe(III)-Fe(III)) colloidal solution to give a WRP/Fe(II)-Fe(III) bilayer film. Spectrocyclic voltammetry measurement of the WRP/Fe(II)-Fe(III) bilayer film reveals that Prussian white (Fe(II)-Fe(II)) is oxidized to Fe(II)-Fe(III) by electrogenerated Ru(III), and Fe(II)-Fe(III) is re-reduced to Fe(II)-Fe(II) by electrogenerated H(x)WO(3). Visible-light irradiation of the WRP hybrid film generates a small photocurrent (approximately 8 nA cm(-2)) at 0.4 V of an applied potential, whereas irradiation of the WRP/Fe(II)-Fe(II) bilayer film (Fe(II)-Fe(III) is electrochemically reduced to the Fe(II)-Fe(II) state) significantly generates a steady photoanodic current of 2.0-1.1 microA cm(-2) under the same conditions, thus demonstrating that the photoanodic current is produced by the layered Fe(II)-Fe(II) film. The photoaction spectrum of the bilayer film reveals that the photoanodic current is based on the photoexcitation of [Ru(bpy)(3)](2+). The photogeneration of Fe(II)-Fe(III) from Fe(II)-Fe(II) is shown by the absorption spectral change of the bilayer film on irradiation. These results corroborate the notion that Fe(II)-Fe(II) is oxidized by photogenerated Ru(III) to generate Fe(II)-Fe(III). However, the rate of photogeneration of Fe(II)-Fe(III) is slow, which could be ascribed to the fast back electron transfer (ET) from WO(3) to Ru(III), comparable with the forward ET from Fe(II)-Fe(II) to Ru(III). The fast back ET could be a crucial problem for the [Ru(bpy)(3)](2+)-sensitized reaction in the hybrid film.     

Preparation,Characterization, Luminescent and Electrochemical Properties of Ru(bpy)2-functionalized Silica Nanoparticles

Ru(II)-complex functionalized silica nanoparticles(nano-SiO₂) were prepared via a coordination reaction of cis-dichlorobis(2,2'-bipyridine)ruthenium[Ru(bpy)₂Cl₂] complex with poly(4-vinylpyridine)(P4VP)-modified nano-SiO₂ particles. Both the Ru-complex and the functionalized nano-SiO₂P4VP-Ru(bpy) hybrids were doped in poly(methyl methacrylate)(PMMA) to form optically transparent thin films. The composition and spectroscopic properties of the nano-SiO₂P4VP-Ru(bpy) hybrids were evaluated with the help of thermogravimetric and elemental analysis, and UV-Vis absorption spectroscopy, infrared spectroscopy, X-ray photoelectron spectroscopy, and fluorescence spectroscopy. Microscopy images revealed that the nanohybrids were approximately 12 nm in diameter and readily formed aggregates following the functionalization with P4VP and Ru(bpy)₂Cl₂. The as-prepared nano-SiO₂P4VP-Ru(bpy) hybrids produced emissions at approximately 604 and 654 nm under radiation both in solution and in doped thin films. Finally, cyclic voltammetry studies on the nanohybrid-modified electrode revealed a redox couple with the cathodic and anodic potentials at approximately 0.28 and 0.73 V(vs. Ag/AgCl), attributed to the one electron transfer of Ru(bpy)₂^2+/3+ immobilized on the nano-SiO₂ particles.     

[Ru(bpy)_2tpphz]~(2+)与Zn~(2+)形成的双核配合物的荧光性质研究

近年来,钌多吡啶配合物与DNA的作用得到了比较广泛的研究,并且发展了一系列具有特定功能的钌配合物犤1犦。如传统的DNA分子光开关犤Ru(bpy)2dppz犦2+和犤Ru(phen)2dppz犦2+犤2,3犦(bpy=2,2'-联吡啶,phen=1,10-菲咯啉,dppz=二吡啶犤3,2-a:2',3'-c犦吩嗪)。这些配合物与DNA具有较强的结合力,在水溶液中几乎不发光,但在DNA存在下则有强烈荧光发出。这是由于配合物插入DNA的碱基对之后,保护了dppz的吡嗪环上的N原子,使其免受水分子的进攻从而导致配合物荧光的恢复。但是对于大多数的多吡啶钌配合物来讲,由于其自身较强的背景荧光或与DN…     

Zero-phonon and vibronic structure of [Os(bpy)32+ doped into single-crystal [Ru(bpy)3](ClO4)2

Highly resolved emission and absorption spectra of [Os(bpy)₃]²⁺, doped into single-crystal [Ru(bpy)₃](ClO₄)₂, are reported. Our investigations, at low temperatures (2⩽T⩽50 K) and high magnetic fields ( 0⩽H⩽6 T ), lead to the following results: The three lowest excited states of [Os(bpy)₃]²⁺ in this matrix are identified from zero-phonon transitions lying at 14169 ± cm⁻¹ (line I), 14230± cm⁻¹ (line II), and 14380 ± 2 cm⁻¹ (line III). These transitions are found at the same energies (within the experimental error of ± 2 cm⁻¹) in absorption and emission. The extinction coefficients of II and III are ≈ 10³ XXX mol⁻¹ cm⁻¹ while the transition |0>→ |I> (line I) is strongly forbidden. However, under high magnetic fields this absorption line grows in due to a mixing of |I> with |II>. A large number of vibronic peaks is identified in the emission spectra. The corresponding vibrational modes are compared to Raman and IR data of [Ru(bpy)₃]²⁺ and [Os(bpy)₃]²⁺. Several distinct modes couple more strongly to the transition from the lowest excited state |I>, others to the transition from |II>, as is shown by investigating the magnetic field dependence of the emission spectra.