Characterization of [peptide+(Ag)n]+ complexes using matrix-assisted laser desorption/ionization time-of-flight mass spectrometry

Silver ion complexes of peptides [M + (Ag)_n]⁺, M = angiotensin I or substance P where n = 1–8 and 17–23 for angiotensin I and n = 1–5 for substance P, are identified and characterized using matrix‐assisted laser desorption/ionization time‐of‐flight mass spectrometry (MALDI‐TOFMS). The Ag⁺ coordination number exceeds the number of available amino acid residues in angiotensin I whereas the number of observed complexes in substance P is less than the number of amino acid residues in it. The larger coordination number of angiotensin I with Ag⁺ indicates the simultaneous binding of several Ag⁺ ions to the amino acid residue present in it. The lower number of observed complexes in substance P suggests the binding of two or more residues to one Ag⁺ ion. The presence of trifluoroacetic acid in the peptide samples reduces the Ag⁺ coordination ability in both the peptides which indicates that the basic residues in it are already protonated and do not participate in the Ag⁺‐binding process. The Ag⁺ ion also forms a complex with the α‐cyano‐4‐hydroxycinnamic acid (CHCA) matrix and is observed in the MALDI mass spectra and the formation of [CHCA + Ag]⁺, [CHCA + AgNO₃]⁺ and [(CHCA)₂ + Ag]⁺ ions is due to the high binding affinity of Ag⁺ to the CN group of CHCA. Copyright © 2010 John Wiley & Sons, Ltd.     

A Cryptate Reference Electrode for Ionic Liquids

The cryptate electrode (Ag/Ag⁺222), prepared by immersing silver wire in a solution of silver(I) salt and the cryptand 222 (4,7,13,16,21,24‐hexaoxa‐1,10‐diazabicyclo[8.8.8]hexacosane) in ionic liquids have been studied. The potential of the electrode is stabilized by the equilibrium of the Ag⁺ ion complexation by the cryptand, similarly to the potential stabilization by the ionic product of slightly soluble salts, used in aqueous electrodes of the second kind. The Ag/Ag⁺222 cryptate electrode (concentration of the cryptate was much higher than the silver(I) cation concentration, [222]>[Ag⁺]) may be used as a reference electrode in room temperature ionic liquids. The potential of the Ag/Ag⁺222 electrode is less sensitive to the presence of impurities, such as halides or water, in comparison to the Ag/Ag⁺ electrode. After anodic or cathodic polarization, the potential of the Ag/Ag⁺222 electrode comes back to the initial open circuit potential quickly. Preparation of the Ag/Ag⁺222 reference electrode is very easy: a silver wire is immersed in a solution of Ag⁺ salt and cryptand 222 (both available commercially) in the ionic liquid under study.     

The Geometric Structure of Silver‐Doped Silicon Clusters

Cationic silver‐doped silicon clusters, Si_nAg⁺ (n=6–15), are studied using infrared multiple photon dissociation in combination with density functional theory computations. Candidate structures are identified using a basin‐hopping global optimizations method. Based on the comparison of experimental and calculated IR spectra for the identified low‐energy isomers, structures are assigned. It is found that all investigated clusters have exohedral structures, that is, the Ag atom is located at the surface. This is a surprising result because many transition‐metal dopant atoms have been shown to induce the formation of endohedral silicon clusters. The silicon framework of Si_nAg⁺ (n=7–9) has a pentagonal bipyramidal building block, whereas the larger Si_nAg⁺ (n=10–12, 14, 15) clusters have trigonal prism‐based structures. On comparing the structures of Si_nAg⁺ with those of Si_nCu⁺ (for n=6–11) it is found that both Cu and Ag adsorb on a surface site of bare Si_n⁺ clusters. However, the Ag dopant atom takes a lower coordinated site and is more weakly bound to the Si_n⁺ framework than the Cu dopant atom.     

catena‐Poly­[1,4‐diazo­niabicyclo­[2.2.2]­octane [silver(I)‐tri‐μ‐thio­cyanato‐κ6S:S]]

The title compound, {(C₆H₁₄N₂)[Ag(NCS)₃]}_n, is a polymeric silver(I) complex. The Ag^I atom is hexacoordinated by the S atoms of six thio­cyanate anions, with each thio­cyanate S atom acting in a bridging mode to link the Ag atoms together. The unique Ag^I atom lies at a cell origin and has crystallo­graphically imposed symmetry. The diazonia[2.2.2]octane molecule lies about a site with imposed symmetry with the unique N atom on a threefold axis. The S and N atoms of the thio­cyanate ligands sit on a mirror plane and a threefold axis, respectively. The crystal structure consists of one‐dimensional chains, which are stabilized by N—H⋯N hydrogen bonds to form a three‐dimensional network.     

catena‐Poly­[[(benzoato‐κO)silver(I)]‐μ‐2‐amino­pyrimidine‐κ2N1:N3]

The title complex, [Ag(C₇H₅O₂)(C₄H₅N₃)]_n, is a polymer based on a mononuclear silver(I)‐centered fragment. The Ag^I atom is trigonally coordinated by two N atoms from two 2‐­amino­pyrimidine ligands and one O atom from one benzoate anion, giving zigzag polymeric chains with an [–Ag—N—C—N–]_n backbone running along the a axis. It is proposed that intermolecular hydrogen bonding drives the formation of the chain polymer.     

Structure Determination of an AgI‐Mediated Cytosine–Cytosine Base Pair within DNA Duplex in Solution with 1H/15N/109Ag NMR Spectroscopy

The structure of an Ag^I‐mediated cytosine–cytosine base pair, C–Ag^I–C, was determined with NMR spectroscopy in solution. The observation of 1‐bond ¹⁵N‐¹⁰⁹Ag J‐coupling (¹J(¹⁵N,¹⁰⁹Ag): 83 and 84 Hz) recorded within the C–Ag^I–C base pair evidenced the N3–Ag^I–N3 linkage in C–Ag^I–C. The triplet resonances of the N4 atoms in C–Ag^I–C demonstrated that each exocyclic N4 atom exists as an amino group (?NH₂), and any isomerization and/or N4–Ag^I bonding can be excluded. The 3D structure of Ag^I–DNA complex determined with NOEs was classified as a B‐form conformation with a notable propeller twist of C–Ag^I–C (?18.3±3.0°). The ¹⁰⁹Ag NMR chemical shift of C‐Ag^I‐C was recorded for cytidine/Ag^I complex (δ(¹⁰⁹Ag): 442 ppm) to completed full NMR characterization of the metal linkage. The structural interpretation of NMR data with quantum mechanical calculations corroborated the structure of the C–Ag^I–C base pair.     

Mass spectrometric study of the dissociation of Group XI metal complexes with fatty acids and glycerolipids: Ag2H+ and Cu2H+ ion formation in the presence of a double bond

Results of mass spectrometric studies are reported for the collisional dissociation of Group XI (Cu, Ag, Au) metal ion complexes with fatty acids (palmitic, oleic, linoleic and α-linolenic) and glycerolipids. Remarkably, the formation of M₂H⁺ ions (M = Cu, Ag) is observed as a dissociation product of the ion complexes containing more than one metal cation and only if the lipid in the complex contains a double bond. Ag₂H⁺ is formed as the main dissociation channel for all three of the fatty acids containing double bonds that were investigated while Cu₂H⁺ is formed with one of the fatty acids and, although abundant, is not the dominant dissociation channel. Also, Cu(I) and Ag(I) ion complexes were observed with glycerolipids (including triacylglycerols and glycerophospholipids) containing either saturated or unsaturated fatty acid substituents. Interestingly, Ag₂H⁺ ion is formed in a major fragmentation channel with the lipids that are able to form the complex with two metal cations (triacylglycerols and glycerophosphoglycerols), while lipids containing a fixed positive charge (glycerophospocholines) complex only with a single metal cation. The formation of Ag₂H⁺ ion is a significant dissociation channel from the complex ion [Ag₂(L–H)]⁺ where L = Glycerophospholipid (GP) (18:1/18:1). Cu(I) also forms complexes of two metal cations with glycerophospholipids but these do not produce Cu₂H⁺ upon dissociation. Rather organic fragments, not containing Cu(I), are formed, perhaps due to different interactions of these metal cations with lipids resulting from the much smaller ionic radius of Cu(I) compared to Ag(I).     

A highly distorted hexacoordinated silver(I) complex: synthesis,crystal structure,and DFT studies

A new highly distorted hexacoordinated silver(I) complex [AgL₂NO₃] with 2-(bis(methylthio)methylene)-1-phenylbutane-1,3-dione (L) as ligand is synthesized and characterized using elemental analysis, FTIR, NMR, and X-ray single-crystal structure analysis. The ligand (L) and the nitrate group act as bidentate ligands. The geometry around the silver ion has an intermediate configuration between a trigonal prism (TP) and an octahedron (OCT). Continuous shape measure (CShM) analysis indicated a closer configuration to TP than OCT. Experimentally and theoretically, the Ag–S bonds are shorter than any of the Ag–O bonds, indicating a stronger interaction between Ag⁺ (soft metal) and S-atom as a softer site than oxygen. Natural bond orbital (NBO) analyses showed higher interaction energies between the S-atom lone pairs and the Ag–antibonding NBO (8.61–31.39 kcal/mol) than LP(O)→Ag (3.48–11.46 kcal/mol). The acceptor antibonding NBO of the Ag atom has mainly s-orbital character. The Ag atom has a natural charge of +0.7579 e at the experimental structure, suggesting that negative charge was transferred from the ligand (0.0666 e) and nitrate (0.1090 e) to the Ag ion. Using Hirshfeld surface analysis, the important intermolecular interactions between molecular units within the crystal lattice of the ligand and its Ag-complex were analyzed and compared.     

Molecular Structure of the Silver(I) Triflate Complex with N,N′,N″,N‴-tetrakis(3′,5′-difluorobenzyl)-1,4,8,11-tetraazacyclotetradecane

The structure of the silver(I) triflate complex with N,N′,N″,N?-tetrakis-(3′,5′-difluorobenzyl)-1,4,8,11-tetraazacyclotetradecane is reported. The Ag⁺–π interaction between the Ag⁺ ion incorporated in the cyclam moiety and the aromatic side-arm was observed in solid and solution by X-ray crystallography and UV–VIS titration experiments, respectively. It is also revealed that the Ag⁺ complex is stable in gas phase from the FAB-MS. The energy of the Ag⁺–π interaction was estimated as about 30 kJ/mol by Hartree–Fock/3-21G^(*) and DFT (B3LYP/3-21G^(*)) calculations. The NBO analysis indicated that s donation is the main contribution to the Ag⁺–aromatic ring interaction.     

The Helical Coordination Polymer Ag(Nic)2(NO3)

Single crystals of Ag(Nic)₂(NO₃) were obtained from an aqueous solution of silver nitrate and nicotine as plate‐like colourless crystals. The crystal structure (monoclinic, P2₁, Z = 2, a = 933.3(2), b = 1136.8(2), c = 1024.3(2) pm, β = 94.49(2)°) consists of helical chains in which one nicotine molecule bridges with both the pyridine‐N and the pyrrol‐N coordinating and with a second nicotine molecule terminally coordinating with the pyridine‐N. A monodentate nitrate‐O is completing the coordination sphere of Ag⁺ to a distorted tetrahedron. Ag–N distances (229‐240 pm) attest for a rather strong attraction of the nicotine molecules to Ag(I) and thereby constitute essentially a one‐dimensional, helical coordination polymer according to the formulation Ag(Nic1)_2/2(Nic2)_1/1(NO₃)_1/1.     

Synthesis and Crystal Structure of a Polymeric Heteronuclear Complex of Cadmium(II) and Silver(I)

A polymeric complex of Cd(II) and Ag(I) bridged by thiocyanate and ethylenediamine, [Cd(en)_1.5Ag(SCN)₃], has been prepared and its structure determined by X-ray diffraction methods. The complex crystallizes in space group P2₁/n with a =7.456(1), b =9.915(2), c =19.822(2)Å, β =98.94(1)°. The Cd(II) atom is octahedrally coordinated by three SCN^- anions and two en molecules, while the Ag(I) atom is tetrahedraly coordinated by four SCN^- anions. Both SCN^- anions and en molecules act as bridging ligands and link Ag(I) and Cd(II) atoms to form a three-dimensional polymeric structure. The distance between Ag(I) and the atom S of a 1,1,3-µ3-SCN^- anion is much longer than that between Ag(I) and the atom S of a 1,3-µ-SCN^- anion. The short Ag-Ag distance of 3.133 Å and small Ag-S-Ag angle of 70.92° strongly suggests the existence of an Ag-Ag bonding interaction in the complex.     

catena‐Poly[[silver(I)‐μ‐[9,10‐bis(1H‐benzimidazol‐1‐ylmethyl)anthracene]‐κ2N3:N3′] bis(nitrato‐κO)silver(I)]

Yellow needle‐shaped crystals of the title compound, {[Ag(C₃₀H₂₂N₄)][Ag(NO₃)₂]}_n, were obtained by the reaction of AgNO₃ and 9,10‐bis(benzimidazol‐1‐ylmethyl)anthracene (L) in a 2:1 ratio. The asymmetric unit consists of two Ag^I cations, one half L ligand and one nitrate anion. One Ag^I cation occupies a crystallographic inversion centre and links two N‐atom donors of two distinct L ligands to form an infinite one‐dimensional coordination polymer. The second Ag^I cation lies on a crystallographic twofold axis and is coordinated by two O‐atom donors of two nitrate anions to form an [Ag(NO₃)₂]⁻ counter‐ion. The polymeric chains are linked into a supramolecular framework via weak Ag...O [3.124 (5) Å] and Ag...π (2.982 Å) interactions (π is the centroid of an outer anthracene benzene ring). The π interactions contain two short Ag...C contacts [2.727 (6) and 2.765 (6) Å], which can be considered to define Ag–η²‐anthracene bonding interactions. In comparison with a previously reported binuclear Ag^I complex [Du, Hu, Zhang, Zeng & Bu (2008). CrystEngComm, 10 , 1866–1874], this new one‐dimensional coordination polymer was obtained by changing the metal–ligand ratio during the synthesis.     

Silver(I) complex with 2-amino-4,4α-dihydro-4α,7-dimethyl-3H-phenoxazin-3-one (Phx-1) ligand: crystal structure,vibrational spectra and biological studies

The first metal complex of Phx-1 ligand, bis(2-amino-4,4α-dihydro-4α,7-dimethyl-3H-phenoxazin-3-one)nitratosilver(I), [Ag(Phx-1)₂NO₃], has been obtained and investigated by single crystal X-ray diffraction and vibrational spectroscopy methods. The Ag⁺ is bonded to heterocyclic nitrogen atoms of two organic ligands and one oxygen atom of a nitrate anion. The Phx-1 ligand coordination mode is supported by IR and Raman spectra, interpreted with the help of theoretical DFT studies. The antibacterial activity of the ligand and its Ag(I) complex as well as some reference compounds were screened against Gram-positive and Gram-negative bacteria, applying microdilution procedures. High sensitivity to the studied complex was found for Rhodococcus erythropolis and Bacillus licheniformis strains. Modified Phx-1 ligand preparation procedures are also presented.     

Low-dimensional Compounds Containing Cyano Groups. XIII. Structural–spectral Correlation of Copper Dicyanoargentates

The new mixed-valence mixed-metal complex Cu(py)₆Cu₂Ag₂(CN)₆ (py = pyridine) possesses a three dimensional polymeric crystal structure. The Cu(I) atom is tetrahedrally coordinated by two nitrogen atoms of pyridine molecules, by one nitrogen atom of the dicyanoargentate anion and by one carbon atom of the cyano group. Both the dicyanoargentate anion and the cyano group bridge the Cu(I) atom with neighboring Cu(II) atoms. These are hexacoordinated in the form of an elongated tetragonal bipyramid. The equatorial plane is formed by two nitrogen atoms from two pyridine molecules and two nitrogen atoms from bridging cyano groups. Axial positions are occupied by nitrogen atoms of the bridging [Ag(CN₂]⁻ anions. Correlation between structures of the title compound and seven other dicyanoargentates with their i.r. spectra has been studied. The coordination mode of [Ag(CN₂]⁻ anions in compounds Cu_8-xAg_x(tn)₃(CN)₁₀ x = 0.25, Cu(3-Mepy)₂Ag₂(CN)₄, Cu(py)₂Ag₂(CN)₄ and Cu(py)₄Ag₂(CN)₄ (tn is 1,3-diaminopropane, 3-Mepy is 3-methylpyridine) is predicted based on this correlation.     

Oscillations in the belousov-zhabotinskii system (BZR) catalysed by bis-bipyridine-silver complexes

A new catalytic ion couple [Ag(bipy)₂]⁺/[Ag(bipy)₂]²⁺ was found to catalyze the Belousov-Zhabotinskii reaction between bromate and malonic acid in sulfuric acid solution. Because of the insolubility of [Ag(bipy)₂]⁺ salts the reaction is not homogeneous. Oscillations could be observed to redox potential, the potentials of Ag⁺ and Br^? ion sensitive electrodes, and in light scattering caused by the periodic precipitation and dissolution of Ag^I complex.     

catena‐Poly­[[di‐μ‐benzoato‐κ4O:O′‐disilver(I)]‐μ‐N,N′‐bis(2‐fluoro­benzyl­idene)­butane‐1,4‐di­amine‐κ2N:N′]

The title complex, [Ag₂(C₇H₅O₂)₂(C₁₈H₁₈F₂N₂)]_n, is a dinuclear silver(I) compound with one inversion centre between pairs of Ag atoms and another at the mid‐point of the central C—C bond in the butane‐1,4‐diamine moiety. Each of the smallest repeat units consists of two silver(I) cations, two benzoate anions and one N,N′‐bis(2‐fluorobenzyl­idene)­butane‐1,4‐di­amine Schiff base ligand. Each Ag^I ion is three‐coordinated in a trigonal configuration by two O atoms from two benzoate anions and one N atom from a Schiff base ligand. The di‐μ‐benzoato‐disilver(I) moieties are linked by the bridging Schiff base ligand, giving zigzag polymeric chains with an [–Ag⋯Ag—N—C—C—C—C—N–]_n backbone running along the b axis.     

Polymeric (3‐amino‐2‐chloropyridine)nitratosilver(I)

In the title compound {alternative name: poly­[silver(I)‐μ‐(3‐­amino‐2‐chloro­pyridine)‐μ‐nitr­ato]}, [Ag(NO₃)(C₅H₅ClN₂)]_n the Ag^I atom is in an irregular AgN₂O₃ geometry, surrounded by one pyridyl N atom [Ag—N 2.283 (5) Å], one amine N atom [Ag—N 2.364 (6) Å] and three O atoms from different nitrate ions [Ag—O 2.510 (6)–2.707 (6) Å]. The Ag ions are bridged by the 3‐amino‐2‐chloro­pyridine ligands into helical chains. Adjacent uniform chiral chains are further interlinked through the NO₃ bridges into an interesting two‐dimensional coordination network in the solid.     

Reactivity Control of C?H Bond Activation over Vanadium–Silver Bimetallic Oxide Cluster Cations

Vanadium–silver bimetallic oxide cluster ions (V_xAg_yO_z⁺; x=1–4, y=1–4, z=3–11) are produced by laser ablation and reacted with ethane in a fast‐flow reactor. A reflectron time of flight (Re‐TOF) mass spectrometer is used to detect the cluster distribution before and after the reactions. Hydrogen atom abstraction (HAA) reactions are identified over VAgO₃⁺, V₂Ag₂O₆⁺, V₂Ag₄O₇⁺, V₃AgO₈⁺, V₃Ag₃O₉⁺, and V₄Ag₂O₁₁⁺ ions, in which the oxygen‐centered radicals terminally bonded on V atoms are active sites for the facile HAA reactions. DFT calculations are performed to study the structures, bonding, and reactivity. The reaction mechanisms of V₂Ag₂O₆⁺+C₂H₆ are also given. The doped Ag atoms with a valence state of +1 are highly dispersed at the periphery of the V_xAg_yO_z⁺ cluster ions. The reactivity can be well‐tuned gradually by controlling the number of Ag atoms. The steric protection due to the peripherally bonded Ag atoms greatly enhances the selectivity of the V–Ag bimetallic oxide clusters with respect to the corresponding pure vanadium oxide systems.     

How well do we understand self-assembly algorithms? From prototype grid to polymers

Algorithms used for the assembly of metallosupramolecular constructs are simple and based upon well-established principles of coordination chemistry. The multinucleating ligand 3,6-bis(2-pyridyl)pyridazine forms a 〚2 × 2〛 grid with copper(I); the related ligand 3,6-bis(2-pyridyl)-1,2,4,5-tetrazine (dptz) is expected to behave in a similar manner with silver(I). However, instead of the expected grid, 〚Ag(dptz)₂〛⁺ solution species are formed. In the solid state, dinuclear 〚Ag₂(dptz)₂〛²⁺ and polymeric 〚{Ag(dptz-N,N’)(μ-dptz)}_n〛ⁿ⁺ complexes have been structurally characterised.     

Experimental and Theoretical Structure Elucidation of the [2 : 1] Complex Ion of Carbo[n]helicene with n=6, 7 and 8 and Ag+

Gas-phase complexes of [n]helicenes with n=6, 7 and 8 and the silver(I) cation are generated utilizing electrospray ionization mass spectrometry (ESI-MS). Besides the well-established [1 : 1] helicene/Ag⁺-complex in which the helicene provides a tweezer-like surrounding for the Ag⁺, there is also a [2 : 1] complex formed. Density functional theory (DFT) calculations in conjunction with energy-resolved collision-induced dissociation (ER-CID) experiments reveal that the second helicene attaches via π-π stacking to the first helicene, which is part of the pre-formed [1 : 1] tweezer complex with Ag⁺. For polycyclic aromatic hydrocarbons (PAHs) of planar structure, the [2 : 1] complex with silver(I) is typically structured as an Ag⁺-bound dimer in which the Ag⁺ would bind to both PAHs as the central metal ion (PAH–Ag⁺–PAH). For helicenes, the Ag⁺-bound dimer is of similar thermochemical stability as the π-π stacked dimer, however, it is kinetically inaccessible. Coronene (Cor) is investigated in comparison to the helicenes as an essentially planar PAH. In analogy to the π-π stacked dimer of the helicenes, the Cor−Ag⁺−Cor−Cor complex is also observed. Competition experiments using [n]helicene mixtures reveal that the tweezer complexes of Ag⁺ are preferably formed with the larger helicenes, with n=6 being entirely ignored as the host for Ag⁺ in the presence of n=7 or 8.