PHOTO-CIDNP STUDY OF PYRIMIDINE DIMER SPLITTING I: REACTIONS INVOLVING PYRIMIDINE RADICAL CATION INTERMEDIATES

The light-induced splitting of pyrimidine dimers was studied using the electron acceptor anthraquinone-2-sulfonate (AQS) as a photosensitizer. To this end, photochemically induced dynamic nuclear polarization (photo-CIDNP) experiments were performed on a series of pyrimidine monomers and dimers. The CIDNP spectra demonstrate the existence of both the dimer radical cation, which is formed by electron transfer from the dimer to the photoexcited sensitizer AQS*, and its dissociation product, the monomer radical cation. In spectra of 1,1′-trimethylene bridged cis,syn pyrimidine dimers, polarization is observed that originates from a spin-sorting process in the dimer radical pair. This points to a relatively long lifetime of the dimer radical cation involved, which is presumably due to stabilization by the trimethylene bridge. Polarization originating from a dimer radical pair is detected in the spectrum of trans,anti (1,3-dimethyluracil) dimer as well. The spectra of the bridged pyrimidines also demonstrate the reversibility of the dissociation of dimer radical cation into monomer radical cation, which is concluded from the observation of polarization in the dimer as a result of spin sorting in the monomer radical pair.     

PHOTO-CIDNP DETECTION OF PYRIMIDINE DIMER RADICAL CATIONS IN ANTHRAQUINONESULFONATE- SENSITIZED SPLITTING

Anthraquinone-2-sulfonate (AQS) photosensitizes pyrimidine dimer splitting. Electron abstraction from the dimer is thought to induce dimer splitting, but direct evidence for the existence and intermediacy of dimer radical cations has been lacking. By employing photochemically induced dynamic nuclear polarization, we have found emission signals in the NMR spectra of dimers upon photolysis of dimers in the presence of anthraquinone-2-sulfonate. The two dimers employed were cis, syn-thymine dimer in which the N(1)-positions were linked by a three-carbon bridge and the N(3), N(3')-dimethyl derivative of that compound. The anthraquinone-2-sulfonate sensitized photochemically induced dynamic nuclear polarization spectrum of the methylated derivative exhibited an emission signal from the dimer-C(6) hydrogens. This result implied the existence of a dimer radical cation (mD+.) formed by electron abstraction by excited anthraquinone-2-sulfonate and nuclear spin sorting within a solvent caged radical ion pair [mD+. AQS-.]. Product pyrimidine photochemically induced dynamic nuclear polarization signals were also seen [enhanced absorption by C(6)-hydrogens and emission by C(5)-methyl groups]. Nuclear spin polarization in the product resulted from spin sorting in one or more of its precursors, including mD+. The results support the conclusion that dimer radical cations not only exist but are intermediates in the photosensitized splitting of pyrimidine dimers by anthraquinonesulfonate.     

CIDNP DETECTED FLASH PHOTOLYSIS OF cis–syn 1,3 DIMETHYLTHYMINE DIMER

Abstract— Theanthraquinone–2-sulfonate photo-sensitized splitting of cis-syn 1,3-dimethylthymine dimer gives rise to large CIDNP effects in the reaction product 1,3-dimethylthymine. The polarization originates from a radical ion pair formed by electron transfer from the dimer to the triplet state sensitizer. In a deoxygenated solution the sign of the polarization of theC–6 proton is reversed compared to the predicted one on account of the CIDNP sign rules. In an aerated solution the correct sign is observed. This can be accounted for by assuming reduction of the lifetime of the radical pair in the presence of oxygen. The time-resolved photo-CIDNP technique was used to study the time dependence of the 1,3-dimethylthymine signal. To account for this time-dependence a cation radical disproportionation reaction is proposed.     

DETECTION OF RADICAL ION INTERMEDIATES IN FLAVIN-PHOTOSENSITIZED PYRIMIDINE DIMER SPLITTING

Photosensitized splitting of cis-syn- and trans-syn-l,3-dimethyluracil dimers by 2′,3′,4′,5′-tetraacetylri-boflavin in acetonitrile containing a trace of perchloric acid was studied by laser flash photolysis. Protonation of the flavin prior to excitation resulted in excited singlet and triplet states that abstracted an electron from the dimers and yielded the protonated flavin radical (F1H₂′⁺), which was detected by absorption spectroscopy. Electron abstraction by the excited singlet state predominated over abstraction by the triplet state. Approximately one-third to one-half of the excited states quenched by the trans-syn dimer yielded F1H₂⁺, the balance presumably undergoing back electron transfer within the geminate radical ion pair generated by the initial electron transfer. A covalently linked dimer-flavin exhibited very inefficient flavin radical ion formation, consistent with the known low efficiency of dimer splitting in this system. These results constitute the first identification of a flavin radical ion intermediate in photosensitized pyrimidine dimer splitting.     

Time-resolved chemically induced dynamic nuclear polarization studies of structure and reactivity of methionine radical cations in aqueous solution as a function of pH

Using time-resolved chemically induced dynamic nuclear polarization (CIDNP) techniques, we have studied the mechanism of the photoreactions of triplet excited 4-carboxybenzophenone (CBP) with l-methionine (Met) and 3-(methylthio)propylamine (MTPA) in aqueous solution and the details of the formation of CIDNP at pH from 6.7 to 13.6. At a pH below the pKa of the nitrogen atom of Met, the CIDNP is strongly affected by degenerate electron exchange between the S-S cationic radical dimer and the zwitterionic form of Met with the rate constant kex = 3.4 x 10(8) s(-1) providing an exhaustive explanation of the pH dependence of steady-state CIDNP that was previously interpreted as a manifestation of fast interconversion among three different methionine radical species (Goez, M.; Rozwadowski, J. J. Phys. Chem. A 1998, 102, 7945-7953). By analyzing the polarization of different protons formed in geminate recombination as a function of the pH, we obtained the branching ratio between two reaction pathways for oxidative quenching of (T)CBP via electron transfer from the sulfur and nitrogen atoms of Met and MTPA. Nuclear spin-lattice relaxation times were determined in the dimeric cation radical of Met (T1,S = 8.5 micros). In the cyclic radical cation of MTPA with a three-electron two-center S-N bond, the estimated paramagnetic relaxation is comparatively slow for all protons. Fast deprotonation of the primary aminium radical cation of MTPA and Met in strongly basic solution takes place on the submicrosecond time scale leading to efficient formation of CIDNP in the neutral aminyl radical.     

FORMATION OF 5-HYDROXYMETHYLCYTOSINE-CONTAINING PYRIMIDINE DIMERS IN UV-IRRADIATED BACTERIOPHAGE T4 DNA

Cyclobutyl pyrimidine dimers composed of 5-hydroxymethylcytosine and thymine (5HMC>T dimer for a mutant of T4 ( denV ) that is unable to excise pyrimidine dimers from its DNA. The ability of 5HMC to form dimers suggests that other modified pyrimidines such as 5-methylcytosine can participate in dimer formation, particularly at the UV wavelengths in sunlight likely to be responsible for the induction of skin cancer.     

Do Photolyases Need To Provide Considerable Activation Energy for the Splitting of Cyclobutane Pyrimidine Dimer Radical Anions?

cis-syn Cyclobutane pyrimidine dimers, major UV-induced DNA lesions, are efficiently repaired by DNA photolyases. The key step of the repair reaction is a light-driven electron transfer from the FADH(-) cofactor to the dimer; the resulting radical anion splits spontaneously. Whether the splitting reaction requires considerable activation energy is still under dispute. Recent reports show that the splitting reaction of a dimer radical anion has a significant activation barrier (0.45 eV), and so photolyases have to provide considerable energy. However, these results contradict observations that cis-syn dimer radical anions split into monomers at -196 degrees C, and that the full process of DNA photoreactivation was fast (1.5-2 ns). To investigate the activation energies of dimer radical anions, three model compounds 1-3 were prepared. These include a covalently linked cyclobutane thymine dimer and a tryptophan residue (1) or a flavin unit (3), and the covalently linked uracil dimer and tryptophan (2). Their properties of photosensitised splitting of the dimer units by tryptophan or flavin unit were investigated over a large temperature range, -196 to 70 degrees C. The activation energies were obtained from the temperature dependency of splitting reactions for 1 and 2, 1.9 kJ mol(-1) and 0.9 kJ mol(-1) for the thymine and uracil dimer radical anions, respectively. These values are much lower than that obtained for E. coli photolyase (0.45 eV), and are surmountable at -196 degrees C. The activation energies provide support for previous observations that repair efficiencies for uracil dimers are higher than thymine dimers, both in enzymatic and model systems. The mechanisms of highly efficient enzymatic DNA repair are discussed.     

Olefin Isomerization via Radical‐Ion Pairs in Triplet States Studied by Chemically Induced Dynamic Nuclear Polarization (CIDNP)

Geometric isomerizations of olefins following photoinduced electron transfer (PET) are classified according to the relative energetic positions of the radical‐ion pairs and the reactant triplets. Each class exhibits characteristic CIDNP (chemically induced dynamic nuclear polarization) effects, for which typical examples are presented. Time‐resolved CIDNP experiments on the system triphenylamine/fumarodinitrile (= (2E)‐but‐2‐enedinitrile), where formation of the olefin triplet is impossible, show that there is also no isomerization of the olefin radical anion. With triisopropylamine or fumarodinitrile as the reaction partner for 4,4′‐dimethoxystilbene (= 1,1′‐[(1E)‐ethane‐1,2‐diyl]bis[4‐methoxybenzene]), both oxidative and reductive quenching give almost mirror‐image CIDNP spectra because of the pairing theorem; reverse electron transfer of the triplet radical‐ion pairs populates the stilbene triplet only, which then isomerizes. With anethole (= 1‐methoxy‐4‐(prop‐1‐enyl)benzene; M), the competition between electron return of triplet pairs to give either M + ³X or ³M + X was studied by using a second isomerizable olefin (diethyl fumarate (= diethyl (2E)‐but‐2‐enedioate) or cinnamonitrile (= (2E)‐3‐phenylprop‐2‐enenitrile)) as the reaction partner X. Classes can be changed by employing PET sensitization. With ACN (anthracene‐9‐carbonitrile) as the sensitizer, anethole does not produce any directly observable polarizations, but a substitution of ACN^.? by the radical anion of 1,4‐benzoquinone (= cyclohexa‐2,5‐diene‐1,4‐dione) or fumarodinitrile within the lifetime of the spin‐correlated radical‐ion pairs leads to very strong CIDNP signals that reflect the effects of both pairs.     

REMOVAL OF THYMINE-CONTAINING PYRIMIDINE DIMERS FROM UV LIGHT-IRRADIATED DNA BY S1 ENDONUCLEASE

Abstract— S₁ endonuclease was shown to remove thymine-containing pyrimidine dimers from UV-irradiated human DNA, although efficient removal could be demonstated only by using long digestion times, relatively high enzyme concentrations, and irradiation sufficient to yield dimer substitutions in DNA of 1 per 1W300 (dimers/base pair). Neutral and alkaline sucrose gradient analysis of strand break induction by S, of UV-irradiated DNA suggests that recognition of the dimer by S, is the limiting factor in its removal and dimer removal usually results from attack on the dimer containing DNA strand without the induction of a double-strand break.     

STRUCTURE-REACTIVITY RELATIONSHIPS IN REDOX-PHOTOSENSITIZED SPLITTING OF PYRIMIDINE DIMERS AND UNUSUAL ENHANCING EFFECT OF MOLECULAR OXYGEN *

Abstract Redox photosensitization using the phenanthrene-p-dicyanobenzene pair in acetonitrile has been applied to the respective four isomeric dimers of N.N′-dimethylthymine (DMT) and N,N′-dimethyluracil (DMU) as well as to several related cyclobutane compounds. The head-to-head (syn) dimers of both DMT and DMU can undergo photosensitized splitting in the following order of efficiency: cis, syn dimer of DMT > cis, syn dimer of DMU > trans, syn dimer of DMT. On the other hand, the head-to-tail (anti) dimers are totally unreactive and have higher oxidation potentials than the corresponding syn dimers. It is suggested that the key mechanistic pathway is the formation of π complexes between the dimers and the photo-generated cation radical of phenanthrene by way of which splitting of the cyclobutane ring catalytically occurs without the formation of the discrete cation radical of the dimers. Structure-reactivity relationships are interpreted in terms of through-bond interactions between the n orbitals of N(l) and N(l′) involving the C(6)-C(6′) bond, as well as in terms of steric repulsion. It was found that aeration of solution greatly enhances the quantum yields of photosensitized splitting; the limiting quantum yield for splitting of the cis, syn dimer of DMT is 100.     

Primary processes in the photosensitized redox reaction of dimers of thiacarbocyanine dyes

The kinetics and the mechanism of the reaction of donor (ascorbic acid) oxidation by electron acceptors (methylviologen and p-nitroacetophenone) photosensitized by dimers of sulfoalkyl-9-ethylthiacarbocyanine dyes (Dye1, Dye2, and Dye3) were studied in aqueous solutions. Dimers of the dyes (dianions) are capable of transition to the triplet state that is mainly quenched by acceptors to form radical anions of dimers, which are unstable and dissociate within 10–12 μs into the monomer (anion) and its radical (the limiting reaction stage). The presence of a donor in the dye-acceptor mixture leads to one-electron reduction of the monomer radical to its anion followed by the dimerization reaction. The results of the analysis of the experimental data obtained by the laser photolysis technique are in good agreement with the calculated kinetic curves for the formation and the decay of the dimer radical anions.     

Time-resolved FT-EPR study of photoreduction of duroquinone by triethylamine in methanol

Using time resolved Fourier transform EPR spectroscopy the photoreduction of duroquinone by triethylamine in methanol solution was investigated. It is found that the spin-polarized (CIDEP) duroquinone triplet deactivates by electron transfer from triethylamine generating duroquinone radical anion and amine radical cation, and by hydrogen transfer from the solvent generating durosemiquinone radical and hydroxymethyl radical, respectively. All radicals are observed at different conditions and are spin-polarized by triplet mechanism and partially by ST₀ radical pair mechanism. The time dependence of FT-EPR intensities of radical cation and radical anion on the amine concentration is investigated in the range of 1 to 100 mM triethylamine. The contribution of the triplet mechanism to the spin polarization of radicals changes with different triethylamine concentrations. The durosemiquinone radical is found to be transformed into duroquinone radical anion in the presence of triethylamine in the solution. CIDNP experiments indicate that the hydrogen back transfer between the durosemiquinone radical and hydroxymethyl radical pair has a significant influence on the time behaviour of duroquinone radical anion. The intensity of triethylamine radical cation is found to be decreased with the increase of triethylamine concentration, which is interpreted that the triethylamine radical cation is deprotonated by the amine. Based on the FT-EPR results, a new complete mechanism is proposed.     

FLAVIN-SENSITIZED PHOTOCHEMICALLY INDUCED DYNAMIC NUCLEAR POLARIZATION DETECTION OF PYRIMIDINE DIMER RADICALS

A photochemically induced dynamic nuclear polarization (photo-CIDNP) study of carboxymethyllumiflavin-sensitized splitting of pyrimidine dimers has been carried out. In aqueous solution at high pH, an emission signal (delta 3.9 ppm) was observed from the dimer C(6)- and C(6')-protons of an N(1), N(1')-trimethylene-bridged thymine dimer (1). The dimer photo-CIDNP signal was seen only above pD 11.6 and was most intense at pD 12.9. Also observed were weak enhanced absorption signals from the product of splitting, trimethylenebis(thymine) (delta 1.7 and 7.2 ppm). In contrast, cis, syn-thymine dimer (3) gave no photo-CIDNP signals from the dimer. An enhanced absorption at 1.8 ppm, however, due to the product of splitting (thymine) was observed. It was found that dimer 1 and, to a lesser extent, dimer 3 quenched flavin fluorescence. An N(3),N(3')-dimethylated derivative of 1, however, failed to quench flavin fluorescence. Comparison of the pD profile of the dimer photo-CIDNP signal to the pKa values for thymidine dimer suggested that principally the dideprotonated dimer undergoes electron abstraction by the excited flavin.     

PYRIMIDINE DIMER FORMATION IN ULTRAVIOLET IRRADIATED TMV-RNA

Abstract— The formation of pyrimidine dimers on ultraviolet irradiation of TMV-RNA in water is demonstrated in the region from 254 nm to 302 nm. No dimer is present in either unirradiated E. coli ribosomal RNA or TMV-RNA. Dimer formation was also examined in TMV-RNA irradiated in the presence of 5times10^-6 M proflavin, in high salt, on dry ice, and in 90% methanol. No correlation of pyrimidine dimers with any biologically defined lesion is presently possible and it is suggested that dimer may not be involved in the inactivation of this material.     

Model Studies of DNA Photorepair: Enthalpy of Cleavage of a Pyrimidine Dimer Measured by Photothermal Beam Deflection Calorimetry

Abstract— The enzyme DNA photolyase mediates the repair of pyrimidine dimers. This repair step, a net retro [²+2] reaction, proceeds through either the cation or anion radical of the pyrimidine dimer. In order to understand how electron transfer makes the repair process possible, its energetics have been examined by photothermal beam deflection calorimetry, fluorescence quenching and quantum yield studies. The enthalpy for the cleavage reaction of cis-syn 1,3-dimethylthymine dimer itself was found to be -19 kcal/mol. In addition, from the redox potentials, the enthalpies for the cleavage reactions of the dimer cation radical and the anion radical were determined to be -19 kcal/mol and -28 kcal/mol, respectively.     

PYRIMIDINE DIMER FORMATION IN HUMAN SKIN

Cyclobutyl pyrimidine dimers are major photoproducts formed upon irradiation of DNA with ultraviolet light. We have developed a method for detecting as few as one pyrimidine dimer per million bases in about 50 ng of non-radioactive DNA, and have used this method to quantitate dimer yields in human skin DNA exposed in situ to UV. We found that UVA radiation (320–400 nm) produces detectable levels of dimers in the DNA of human skin. We also measured UVB-induced dimer yields in skin of individuals of differing sun sensitivity and found higher yields in individuals with higher UVB minimal erythema doses and greater sun sensitivity. These approaches should provide important information on damage induced in human skin upon exposure to natural or artificial sources of ultraviolet radiation.     

P-AMINOBENZOIC ACID CAN SENSITIZE THE FORMATION OF PYRIMIDINE DIMERS IN DNA: DIRECT CHEMICAL EVIDENCE

Thymine-containing photoproducts with chromatographic properties similar to those of cyclobutyl pyrimidine dimers can be formed in [³H]-thymine-labeled DNA in solution by 313 nm ultraviolet radiation in the presence of para-aminobenzoic acid (PABA), a compound used in sunscreen preparations. In the absence of PABA, similar fluences of 313 nm radiation do not produce significant numbers of these photoproducts. The thymine-containing photoproducts can be reversed by 254 nm radiation so that the tritium label migrates with the mobility of thymine monomer, a behavior characteristic of thymine-containing cyclobutyl pyrimidine dimers. This result supports previous, but less direct, data from other laboratories indicating that PABA can sensitize dimer formation in the DNA of bacterial and mammalian cells.     

PHOTOSENSITIZATION OF PYRIMIDINE DIMER SPLITTING BY A COVALENTLY BOUND INDOLE

Abstract— Photosensitized pyrimidine dimer splitting characterizes the enzymatic process of DNA repair by the DNA photolyases. Possible pathways for the enzymatic reaction include photoinduced electron transfer to or from the dimer. To study the mechanistic photochemistry of splitting by a sensitizer representative of excited state electron donors, a compound in which an indole is covalently linked to a pyrimidine dimer has been synthesized. This compound allowed the quantitative measurement of the quantum efficiency of dimer splitting to be made without uncertainties resulting from lack of extensive preassociation of the unlinked dimer and sensitizer free in solution. Irradiation of the compound with light at wavelengths absorbed only by the indolyl group (approximately 280 nm) resulted in splitting of the attached dimer. The quantum yield of splitting of the linked system dissolved in N₂0-saturated aqueous solution was found to be 0.04 ± 0.01. The fluorescence typical of indoles was almost totally quenched by the attached dimer. A splitting mechanism in which an electron is efficiently transferred intramolecularly from photoexcited indole to ground state dimer has been formulated. The surprisingly low quantum yield of splitting has been attributed to inefficient splitting of the resulting dimer radical anion. Insights gained from this study have important mechanistic implications for the analogous reaction effected by the DNA photolyases.     

Nanosecond time-resolved magnetic field effect on radical recombination in solution

The time dependence of the magnetic field effect on radical recombination in solution has been analyzed experimentally and theoretically. For the geminate recombination of anthracene anions and dimethylaniline cations in a polar solvent, the effect originates from a magnetic field dependent production of triplet states in an initially singlet phased radical pair, induced by hyperfine interaction of the unpaired electrons with the nuclei. The magnetic field dependence of the triplet yield shows a lifetime broadening of the energy levels of the radical pair if a short delay-time between radical production and triplet observation is chosen. The agreement of this delay-time dependent broadening effect with the theoretical results proves directly the coherence of the spin motion in the radical pairs.