The unusual fragmentation of long‐chain feruloyl esters under negative ion electrospray conditions

Long‐chain ferulic acid esters, such as eicosyl ferulate ( 1 ), show a complex and analytically valuable fragmentation behavior under negative ion electrospay collision‐induced dissociation ((?)‐ESI‐CID) mass spectrometry, as studied by use of a high‐resolution (Orbitrap) mass spectrometer. In a strong contrast to the very simple fragmentation of the [M + H]⁺ ion, which is discussed briefly, the deprotonated molecule, [M – H]^?, exhibits a rich secondary fragmentation chemistry. It first loses a methyl radical (MS²) and the ortho‐quinoid [M – H – Me]^‐? radical anion thus formed then dissociates by loss of an extended series of neutral radicals, C_nH_2n + 1^? (n = 0–16) from the long alkyl chain, in competition with the expulsion of CO and CO₂ (MS³). The further fragmentation (MS⁴) of the [M – H – Me – C₃H₇]^? ion, discussed as an example, and the highly specific losses of alkyl radicals from the [M – H – Me – CO]^‐? and [M – H – Me – CO₂]^‐? ions provide some mechanistic and structural insights.     

On the Structure of PHB (=Poly[(R)‐3‐hydroxybutanoic Acid]) in Phospholipid Bilayers: Preparation of Trifluoromethyl‐Labeled Oligo[(R)‐3‐hydroxybutanoic Acid] Derivatives

Oligomers of (R)‐3‐hydroxybutanoate (OHB) have previously been shown to transport cations through lipid bilayers. The ion‐transport activity has been attributed to the formation of hydrophobic aggregates or pores, which have been identified by fluorescence‐microscopy measurements of membrane‐incorporated fluorescence‐labeled OHBs. To obtain more information about these aggregates, we describe here the synthesis of the specifically F‐labeled HB oligomers II – IV for structural investigation by means of solid‐state ¹⁹F‐NMR spectroscopic techniques.     

Synthesis of Monodisperse Macromolecular Bicyclic and dendritic compounds from (R)-3-hydroxybutanoic acid and benzene-1,3,5-tricarboxylic acid and analysis by fragmenting MALDI-TOF mass spectroscopy

As previously shown, oligo- and poly(β-hydroxyalkanoates) have a high tendency to form lamellar crystallites with ca. 50-Å thickness which corresponds to chain lengths of 16 units (Fig. 1). To have monodisperse model compounds, we have now prepared bicyclic derivatives with three parallel ( 27 – 29 ) or two parallel and an antiparallel chain ( 68 – 70 ) consisting of up to 16 3-hydroxybutanoate (3-HB) units. We also prepared dendritic compounds ( 71 – 75 , 82 – 85 ) containing oligo(3-HB) chains which cannot possibly be arranged as in the lamellae; the branching units were prepared from trimesic acid (= benzene-1,3,5-tricarboxylic acid). So far, none of the prepared samples formed crystals or contained crystalline domains which would have been suitable for single-crystal or powder-diffraction X-ray analysis. The terminally deprotected dendrimers ( 74 , 75 , and 85 ) are multi-anionic (up to 12 peripheral CO₂H groups) and biodegradable. The macromolecular HB derivatives (molecular weight up to 10150 Da) have been fully characterized by IR, ¹H- and ¹³C-NMR, [α]_D, and elemental analysis. Especially important is the analysis by mass spectrometry with the MALDI-TOF technique (Fig. 2), proving that the products are monodisperse; application of a new variation of this MS method (post source decay = PSD or fragment analysis by structural time of flight = FAST^TM) allows for the observation of metastable fragment ions and, thus, is a tool for structural oligomer analysis (Fig. 3).     

Esterase-Activatable Synthetic M+/Cl− Channel Induces Apoptosis and Disrupts Autophagy in Cancer Cells

The formation of a supramolecular synthetic M⁺/Cl⁻ channel in the membrane phospholipid bilayer has been reported upon activation of a methyl pivalate-linked N¹,N³-dialkyl-2-hydroxyisophthalamide by esterases. The channel formation induces apoptosis in cancer cells via the intrinsic pathway. Interestingly, the supramolecular channel was also shown to disrupt autophagy in cancer cells by causing alkalization of lysosomes – a feature that has been confirmed at the cellular and protein level.     

A Highly Selective Mitochondria‐Targeting Fluorescent K+ Sensor

Regulation of intracellular potassium (K⁺) concentration plays a key role in metabolic processes. So far, only a few intracellular K⁺ sensors have been developed. The highly selective fluorescent K⁺ sensor KS6 for monitoring K⁺ ion dynamics in mitochondria was produced by coupling triphenylphosphonium, borondipyrromethene (BODIPY), and triazacryptand (TAC). KS6 shows a good response to K⁺ in the range 30–500 mM , a large dynamic range (F_max/F₀≈130), high brightness (?_f=14.4 % at 150 mM of K⁺), and insensitivity to both pH in the range 5.5–9.0 and other metal ions under physiological conditions. Colocalization tests of KS6 with MitoTracker Green confirmed its predominant localization in the mitochondria of HeLa and U87MG cells. K⁺ efflux/influx in the mitochondria was observed upon stimulation with ionophores, nigericin, or ionomycin. KS6 is thus a highly selective semiquantitative K⁺ sensor suitable for the study of mitochondrial potassium flux in live cells.     

Highly ordered Zn-doped mesoporous silica: An efficient catalyst for transesterification reaction

Designing highly ordered material with nanoscale periodicity is of great significance in the field of solid state chemistry. Herein, we report the synthesis of highly ordered 2D-hexagonal mesoporous zinc-doped silica using a mixture of anionic and cationic surfactants under hydrothermal conditions. Powder XRD, N₂ sorption, TEM analysis revealed highly ordered 2D-hexagonal arrangements of the pores with very good surface area (762 m² g⁻¹) in this Zn-rich mesoporous material. Chemical analysis shows very high loading of zinc (ca. 12.0 wt%) in the material together with retention of hexagonal pore structure. Interestingly, high temperature calcination resulted into zinc silicate phase, unlike any ZnO phase, which otherwise is expected under heat treatments. High surface area together with Zn loading in this mesoporous material has been found useful for the catalytic activity of the materials in the acid-catalyzed transesterification reactions of various esters under mild liquid phase conditions.     

Synthesis and Structure of Linear and Cyclic Oligomers of 3-Hydroxybutanoic Acid with Specific Sequences of (R)- and (S)-Configurations

To study the stereoselectivity of enzymatic cleavage of poly(3-hydroxybutyrates) (PHB) in a well-defined system (purified depolymerase and monodisperse substrate of specific relative configuration), linear and cyclic oligomers of HB (OHBs) containing (R)- and (S)-3-hydroxybutanoate residues were synthesized. The starting material (R)-HB was prepared from natural sPHB, and (S)-HB by enantioselective reduction of 3-oxobutanoate with yeast or with H₂/Noyori-Taber catalyst (Scheme 2). The HB building blocks were then protected (O-benzyl/tert-butyl ester; Scheme 3) and coupled to give dimers 3 , 4 , tetramers 5 – 9 , and octamers 10 – 18 ; for analytical comparison, a 3mer, 5mer, 6mer, and 7mer ( 19 – 22 ) were also prepared. Two of the tetramers were subjected to macrolactonization conditions (Yamaguchi) to give the cyclic tetramers 23 and 25 and octamers 24 and 26 . All new compounds were fully characterized (m.p., [α]_D, CD, IR, ¹H- and ¹³C-NMR, MS, elemental analysis). Single-crystal X-ray structure analyses were performed with oligolides 24 and 25 (Figs. 2 and 4), and the structures, as well as the crystal packing, were compared with those of analogs containing only (R)-HB units or consisting of 3-amino- instead of 3-hydroxybutanoic-acid moieties.     

Dual Chemical Modification of a Polytheonamide Mimic: Rational Design and Synthesis of Ion‐Channel‐Forming 48‐mer Peptides with Potent Cytotoxicity

Polytheonamide B ( 1 ) is a natural peptide that displays potent cytotoxicity against P388 mouse leukemia cells (IC₅₀=0.098 nm ). Linear 48‐mer 1 is known to form monovalent cation channels on binding to lipid bilayers. We previously developed a fully synthetic route to 1 , and then achieved the design and synthesis of a structurally simplified analogue of 1 , namely, dansylated polytheonamide mimic 2 . Although the synthetically more accessible 2 was found to emulate the channel function of 1 , its cytotoxicity was decreased 120‐fold. Herein, the chemical preparation and biological evaluation of seven analogues 3 – 9 of 2 are reported. Compounds 3 – 9 were modified at their N terminus and/or the side chain of residue 44 of 2 to alter their physicochemical properties. The total synthesis of 3 – 9 was accomplished in a unified fashion by a combination of solid‐phase and solution‐phase chemistry. Systematic evaluation of the hydrophobicities, single‐channel currents, ion‐exchange activities, and cytotoxicities of 3 – 9 revealed that their hydrophobicities are correlated with the total magnitude of ion exchange and determine their cytotoxic potency. Consequently, the most hydrophobic analogue 9 exhibited the lowest IC₅₀ value, which is comparable to that of 1 . Therefore, these results clarified that the bioactivity of the polytheonamide‐based peptides can be rationally controlled by changing their hydrophobicity at the N and C termini of the 48‐amino‐acid sequence.     

Multiple‐stage linear ion‐trap with high resolution mass spectrometry towards complete structural characterization of phosphatidylethanolamines containing cyclopropane fatty acyl chain in Leishmania infantum

The structures of phosphatidylethanolamine (PE) in Leishmania infantum are unique in that they consist of a rare cyclopropane fatty acid (CFA) containing PE subfamily, including CFA‐containing plasmalogen PE species. In this contribution, we applied multiple‐stage linear ion‐trap combined with high‐resolution mass spectrometry to define the structures of PEs that were desorbed as [M – H]^? and [M – H + 2Li]⁺ ions by ESI, respectively. The structural information arising from MSⁿ on both the molecular species are complimentary, permitting complete determination of PE structures, including the identities of the fatty acid substituents and their location on the glycerol backbone, more importantly, the positions of the double bond(s) and of the cyclopropane chain of the fatty acid chain, directing to the realization of the CFA biosynthesis pathways that were reported previously. We also uncovered the presence of a minor dimethyl‐PE subclass that has not been previously reported in L. infantum. This LIT MSⁿ mass spectrometric approach led to unambiguous identification of PE molecules including many isomers in complex mixture that would otherwise be very difficult to define using other analytical approaches. Copyright © 2014 John Wiley & Sons, Ltd.     

Thermal Responsive Ion Selectivity of Uranyl Peroxide Nanocages: An Inorganic Mimic of K+ Ion Channels

An actinyl peroxide cage cluster, Li_48+mK₁₂(OH)_m[UO₂(O₂)(OH)]₆₀ (H₂O)_n (m≈20 and n≈310; U₆₀), discriminates precisely between Na⁺ and K⁺ ions when heated to certain temperatures, a most essential feature for K⁺ selective filters. The U₆₀ clusters demonstrate several other features in common with K⁺ ion channels, including passive transport of K⁺ ions, a high flux rate, and the dehydration of U₆₀ and K⁺ ions. These qualities make U₆₀ (a pure inorganic cluster) a promising ion channel mimic in an aqueous environment. Laser light scattering (LLS) and isothermal titration calorimetry (ITC) studies revealed that the tailorable ion selectivity of U₆₀ clusters is a result of the thermal responsiveness of the U₆₀ hydration shells.     

Photochemical Reaction Mechanisms of 2‐Nitrobenzyl Compounds in Solution,I. 2‐Nitrotoluene: Thermodynamic and Kinetic Parameters of the aci‐Nitro Tautomer

The largely reversible, light‐induced tautomerization of 2‐nitrotoluene ( 1 ) to the quinonoid aci‐nitro tautomer aci‐ 1 was studied by flash photolysis as a benchmark for comparison with the widely used nitrobenzyl phototriggers (`caged compounds'). The pH‐rate profile for the decay of aci‐ 1 in aqueous solution exhibits downward curvature at pH 3 – 4, which is attributed to pre‐equilibrium ionization of the nitronic acid aci‐ 1 to its anion 1 ⁻ (pK_a=3.57). Two regions of upward curvature, at pH ca. 6 and <0 (H₀≈−1), each indicate a change in the reaction mechanism. The elementary reactions that dominate between the curved regions are assigned on the basis of kinetic isotope effects and the observation of general acid catalysis: Hydronium ions regenerate 2‐nitrotoluene by C‐protonation of 1 ⁻ in the pH range of 0 – 6, and H₂O is the proton source at pH>6. A hird, irreversible Nef‐type isomerization of aci‐ 1 prevails in highly acidic solutions (pH<0). The equilibrium constant for the thermal tautomerization of 1 to aci‐ 1 is estimated as pK_T=17.0±0.2 based on kinetic data.     

Hairpin DNA‐Dependent Click Conjugation of Oligonucleotides for Electrochemical Monitoring of Copper(II)

A new electrochemical sensing platform was designed for sensitive detection of copper(II) (Cu²⁺) based on click conjugation of two short oligonucleotides by using methylene blue‐functionalized hairpin DNA as the template. The analyte (Cu²⁺) was in situ reduced to Cu⁺ by sodium ascorbate, which catalyzed the click conjugation between two single‐stranded oligonucleotides one was labelled with a 5′‐alkyne and the other with 3′‐azide group via the Cu⁺‐catalyzed azide‐alkyne cycloaddition. The newly formed long‐chain oligonucleotide induced the conformational change of hairpin DNA to open the hairpin, resulting in methylene blue far away from the electrode for the decrease of redox current. Under optimal conditions, the decrease in the electronic signal was directly proportional to target Cu²⁺ concentration, and allowed the detection of Cu²⁺ at a concentration as low as 1.23 nM. Our strategy also displayed high selectivity for Cu²⁺ against other metal ions owing to the highly specific Cu⁺‐catalyzed click chemistry reaction, and was applicable for monitoring of Cu²⁺ in drinking water with satisfactory results.     

Production,ultrasonic extraction,and characterization of poly (3‐hydroxybutyrate) (PHB) using Bacillus megaterium and Cupriavidus necator

Biodegradable polymer polyhydroxyalkanoates are one of the promising alternatives for conventional plastics. The present article focuses on a modified and novel method for the synthesis of poly (3‐hydroxybutyrate) (PHB) by two microorganisms, viz. Bacillus megaterium and Cupriavidus necator. These microbial cells were grown over fructose as a carbon source, and the produced PHB was recovered using ultrasound as well as solvent assisted extraction. The extracted PHB was characterized using FTIR, ¹H, and ¹³C NMR to observe the functional groups in the PHB molecule. The XRD characterization confirmed the partial crystalline nature of PHB, and the results of TGA, DTG, and DSC analysis attributed to the thermal stability of PHB. The major step of weight loss of PHB derived by B. megaterium and C. necator in TGA analysis was found to be 415°C and 289°C, respectively. These values were comparatively higher than standard PHB, for which it is 260°C. Similarly, the maximum degradation temperature for standard PHB is 236°C, whereas the maximum degradation temperature of PHB synthesized by B. megaterium and C. necator are 248°C and 277°C, respectively. This ascertains that the produced PHB has greater resistance to thermal degradation as compared with PHB standard. The melting point of synthesized PHBs were found to be 175°C to 176°C, which is similar to standard PHB. The glass transition temperature of the synthesized PHBs varies from –8°C to 6°C. The plausible reason behind the variances could be due to difference in crystallinity and molecular weight of polymer matrix. Nevertheless, thermal properties of PHB produced by B. megaterium and C. necator are found to be similar or much better than commercial PHB. The degree of crystallinity of synthesized PHBs are lower than previously reported literatures, which extends its range of applications.     

Supramolecular Nanoparticles via Single‐Chain Folding Driven by Ferrous Ions

Single‐chain nanoparticles can be obtained via single‐chain folding assisted by intramolecular crosslinking reversibly or irreversibly. Single‐chain folding is also an efficient route to simulate biomacromolecules. In present study, poly(N‐hydroxyethylacrylamide‐co‐4′‐(propoxy urethane ethyl acrylate)‐2,2′:6′,2″‐terpyridine) (P(HEAm‐co‐EMA‐Tpy)) is synthesized via reversible addition fragmentation chain transfer polymerization. Single‐chain folding and intramolecular crosslinking of P(HEAm‐co‐EMA‐Tpy) are achieved via metal coordination chemistry. The intramolecular interaction is characterized on ultraviolet/visible spectrophotometer (UV–vis spectroscopy), proton nuclear magnetic resonance (¹H NMR), and differential scanning calorimetry (DSC). The supramolecular crosslinking mediated by Fe²⁺ plays an important role in the intramolecular collapsing of the single‐chain and the formation of the nanoparticles. The size and morphology of the nanoparticles can be controlled reversibly via metal coordination chemistry, which can be characterized by dynamic light scattering (DLS), transmission electron microscope (TEM), and atomic force microscope (AFM).

     

Three Distinct Silver(I) Coordination Polymers: Bridging‐­Ligand Directed Syntheses,Crystal Structures,Luminescence, and Nitrobenzene Sensing Properties

Three distinct Ag^I‐DMAP [DMAP = 4‐(dimethylamino)pyridine] coordination polymers [Ag₂I₂(DMAP)₂]_n ( 1 ), [Ag₂(CN)₂(DMAP)_2.5 · DMAP]_n ( 2 ), and [Ag(SCN)(DMAP)]_n ( 3 ) were constructed by monatomic I^–, diatomic CN^–, and triatomic SCN^– bridges, respectively. 1 – 3 were determined by FT‐IR spectroscopy, elemental analyses, TGA, powder and single‐crystal X‐ray diffraction. 1 exhibits a 1D wavelike chain structure, sustained by 3‐connected I^– bridges, whereas 2 shows a unique 1D single‐ and double‐strand alternating chain, supported by 3‐connected CN^– bridges. Compound 3 has a 2D 3‐connected network architecture, fabricated by 3‐connected SCN^– bridges, and exhibits a (4 · 8²) topology. The luminescence and nitrobenzene sensing properties of 1 – 3 were explored in 2‐propanol suspensions, which revealed that compounds 1 – 3 exhibit DMAP originated luminescence emissions and are highly sensitive for nitrobenzene detection.     

Oligonucleotides Containing 7‐Deaza‐2′‐deoxyinosine as Universal Nucleoside: Synthesis of 7‐Halogenated and 7‐Alkynylated Derivatives,Ambiguous Base Pairing,and Dye Functionalization by the Alkyne–Azide ‘Click’ Reaction

Oligonucleotides containing 7‐deaza‐2′‐deoxyinosine derivatives bearing 7‐halogen substituents or 7‐alkynyl groups were prepared. For this, the phosphoramidites 2b – 2g containing 7‐substituted 7‐deaza‐2′‐deoxyinosine analogues 1b – 1g were synthesized (Scheme 2). Hybridization experiments with modified oligonucleotides demonstrate that all 2′‐deoxyinosine derivatives show ambiguous base pairing, as 2′‐deoxyinosine does. The duplex stability decreases in the order C_d>A_d>T_d>G_d when 2b – 2g pair with these canonical nucleosides (Table 6). The self‐complementary duplexes 5′‐d(F⁷c⁷I‐C)₆, d(Br⁷c⁷I‐C)₆, and d(I⁷c⁷I‐C)₆ are more stable than the parent duplex d(c⁷I‐C)₆ (Table 7). An oligonucleotide containing the octa‐1,7‐diyn‐1‐yl derivative 1g , i.e., 27 , was functionalized with the nonfluorescent 3‐azido‐7‐hydroxycoumarin ( 28 ) by the Huisgen–Sharpless–Meldal cycloaddition ‘click’ reaction to afford the highly fluorescent oligonucleotide conjugate 29 (Scheme 3). Consequently, oligonucleotides incorporating the derivative 1g bearing a terminal C?C bond show a number of favorable properties: i) it is possible to activate them by labeling with reporter molecules employing the ‘click’ chemistry. ii) Space demanding residues introduced in the 7‐position of the 7‐deazapurine base does not interfere with duplex structure and stability (Table 8). iii) The ambiguous pairing character of the nucleobase makes them universal probes for numerous applications in oligonucleotide chemistry, molecular biology, and nanobiotechnology.     

Interfacial synthesis of crystalline quasi-two-dimensional polyaniline thin films for high-performance flexible on-chip micro-supercapacitors

Quasi-two-dimensional (q2D) conducting polymer thin film synergizes the advantageous features of long-range molecular ordering and high intrinsic conductivity, which are promising for flexible thin film-based micro-supercapacitors (MSCs). Herein, we present the high-performance flexible MSCs based on highly ordered quasi-two-dimensional polyaniline (q2D-PANI) thin film using surfactant monolayer assisted interfacial synthesis (SMAIS). Owing to high electrical conductivity, rich redox chemistry, and thin-film morphology, the q2D-PANI MSCs show high volumetric specific capacitance (ca. 360 F/cm³) and energy density (17.9 mWh/cm³), which outperform the state-of-art PANI thin-film based MSCs and promise for future flexible electronics.     

Click Inspired Synthesis of 1,2,3‐Triazole‐linked 1,3,4‐Oxadiazole Glycoconjugates

The glycoconjugation of biologically privileged 1,3,4‐oxadiazole scaffold is described via Cu(I)‐catalyzed azide–alkyne cycloaddition. A series of glycosyl alkynes 1b – i , obtained from various commercial sugars, were treated with azide functionalized 1,3,4‐oxadiazole using click chemistry to access triazole‐linked glycosylated 1,3,4‐oxadiazoles 10b – i in good yields. The structure of the developed glycoconjugates has been ascertained by extensive spectroscopic analysis (¹H &¹³C NMR, IR, and MS).     

Quantitative Analysis of Holmium Ion by a Ho3+ Ion‐Selective Sensor Based on a Symmetric Thio‐Schiff's Base

A poly(vinyl chloride) (PVC) membrane sensor for holmium ions was fabricated based on N‐[(Z)‐1‐(2‐thienyl)‐ methylidene]‐N‐[4‐(4‐{[(Z)‐1‐(2‐thienyl)methylidene]amino} phenoxy)phenyl] amine (TPA) as a new ion carrier, acetophenon (AP) as plasticizing solvent mediator and sodium tetraphenyl borate (NaTPB) as an anion excluder. The electrode shows a good selectivity towards Ho³⁺ ions respect to other inorganic cations, including alkali, alkaline earth, transition and heavy metal ions. The constructed sensor displays a Nernstian behavior (19.5±0.3 mV/decade) over the concentration range of 1.0×10⁻⁶ to 1.0×10⁻² mol·L⁻¹ with the detection limit of the electrode being 4.6×10⁻⁷ mol·L⁻¹ and very short response time (ca. 5 s). It has a useful working pH range of 3.2–9.8 for at least 8 weeks. The electrode was successfully applied as an indicator electrode for the potentiometric titration of a Ho³⁺ solution with EDTA and holmium determination in some alloys. The proposed sensor accuracy was studied by the determination of Ho³⁺ in mixtures of three different ions.     

Folding and Anion‐Binding Properties of Fluorescent Oligoindole Foldamers

A series of oligoindole foldamers 1 a – d that are highly fluorescent were prepared by using a biindole derivative as the repeating unit, and their folding and anion‐binding properties were revealed by ¹H NMR and fluorescence spectroscopy. The oligoindoles exist in an extended conformation, but adopt a compact helical structure in the presence of an anion. The anion is entrapped inside the tubular cavity of the helical strand, comprising four aryl units per turn, by multiple hydrogen bonds with the indole NHs. These structural features were confirmed by ¹H NMR and fluorescence spectroscopy. When folded by anion binding, 1 b – d show characteristic downfield shifts of the NH signals and upfield shifts of the aromatic CH signals by Δδ=0.1–1.0 ppm. The average chemical shift for all the aromatic signals of 1 a – d is more upfield shifted as the chain lengthens, as anticipated from the degree of overlapped aromatic surfaces in the helical strand. Moreover, 1 a – d are strongly fluorescent in the absence of an anion. Upon binding an anion such as a chloride, the shorter oligoindoles 1 a and b lead to negligible change in the emission spectra, whereas the longer ones 1 c and d result in dramatic changes, that is, large hypochromic and bathochromic shifts (Δλ=65 and 70 nm) of the emission band, confirming the helical folding. The association constants (K_a) between oligoindoles and tetrabutylammonium chloride strongly depend on the chain length; <1 M ^?1 for 1 a , 630 M ^?1 for 1 b , 1.1×10⁵ M ^?1 for 1 c , and 2.9×10⁵ M ^?1 for 1 d in 20 % (v/v) MeOH/CH₂Cl₂ at 24±1 °C. In addition, the association constants of 1 c and 1 d with other anions such as fluoride, bromide, iodide, azide, cyanide, acetate, and nitrate are determined to be in the order of 10³–10⁶ M ^?1 under the same conditions.