Hydrogen bonding. Part. 76. Molecular orbital investigation of the stability of tertiary amine-hydrogen fluoride compounds in aqueous solution

N,N-Dimethyl-1-adamantamine-hydrogen fluoride (2MAAHF) does not dissociate in aqueous solution, while 2MAAHCl and 2MAAHBr readily ionize in H₂O. Semi-empirical (AM1-SM2) calculations demonstrate that the enthalpic barrier to dissociation of 2MAAHF in aqueous solution is four times as high as that of 2MAAHCl and three times as high as that of 2MAAHBr. Ab initio calculations (3-21G(*) and 3-61G^*) show that 2MAAHF is a tightly bound molecular complex between neutral HF and neutral amine, with a low dipole moment and little negative charge exposed on fluorine. 2MAAHCl and 2MAAHBr are ion-pairs with an electrostatic hydrogen bond between cation and anion, large dipole moments, and exposed halogen atoms with high electrostatic potential; these factors explain the ease of ionization of 2MAAHCl and 2MAAHBr. Parallel studies on other tertiary amines give similar results.     

Hydrogen bonding. Part 75. Infrared, titrametric and molecular orbital study of the structure, solubility and reaction with fluoride ion of 2,3-dicarboxypyrazine

2,3-Dicarboxypyrazine (2,3-H₂DCPz), unlike 2,3-dicarboxypyridine (2,3-H₂DCPy), does not exist as a zwitterion in the solid state. This is due to the remarkably low base strength of nitrogen in the pyrazine ring relative to that of pyridine. The decrease in the base strength of pyrazine relative to pyridine may result from greater disruption of the aromatic π-system of pyrazine on protonation than is the case with pyridine. We propose that 2,3-H₂DCPz has a structure of C_s symmetry in the solid state in which one carboxyl group forms an internal hydrogen bond to carbonyl of adjacent carboxyl in the same molecule, and the second carboxyl forms an intermolecular hydrogen bond to carbonyl in an adjacent molecule. The monoanion in 2,3-NaHDCPz has a strong O–H–O covalent three-center hydrogen bond between carboxylate groups. When saturated solutions of 2,3-H₂DCPz are treated with F⁻, one additional diacid molecule is taken into solution for each 1.5 F⁻ added. As is the case with 2,3-H₂DCPy, the high solubility and acid strength of 2,3-H₂DCPz (pK_a=2.87) leads to formation of the hydrogen-rich H₂F₃⁻ ion instead of HF₂⁻.     

The chemical composition and bonding structure of B–C–N–H thin films deposited by reactive magnetron sputtering

The chemical composition and bonding structures of B–C–N–H films fabricated by medium frequency magnetron sputtering, with N₂+CH₄+Ar gas mixture sputtering the boron target, were investigated. XPS and FTIR spectrometric analyses show that the increase of CH₄ flow rate during deposition causes an increase of the C content in the films. The increase in the CH₄ flow rate promotes an increase in the B–C, C–N single and C?N double bonds which are the components of the hybridized B–C–N bonding structure. From the results of Raman spectroscopy analysis, it is seen that the intensity of the D band of the films' Raman spectrum decreases with increasing CH₄ flow rate, indicating a decrease of the sp²‐phase content or the sp² C cluster size. The decreases of I_D/I_G also reflect the formation of more boron‐ or nitrogen‐ bound sp³‐coordinated carbons in the films. Copyright © 2009 John Wiley & Sons, Ltd.     

Diazabicyclo[2.2.2]octane-1,4-diium occluded in cubic anionic coordinated framework: the role of trifurcated hydrogen bonds of N–HO and C–HO

A unique coordinated molecular capsule compound is synthesized and characterized by X-ray diffraction. The compound crystallizes in cubic space group of Pa-3 with a=14.348(1), b=14.348(1), c=14.348(1) Å, V=2953.8(4) ų, Z=8. The diazabicyclo[2.2.2]octane-1,4-diium is occluded in the cubic anionic coordinated framework of K⁺ and (ClO₄)⁻ in a dimension of 7.174(1) Å, and assumes ordered feature. All of hydrogen atoms take parts in trifurcated hydrogen bonds of N–HO and C–HO type, respectively, the later being reported for the first time. The IR spectrum of the title compound shows significant shift of CH₂ vibrational bands, and are correlated with X-ray structural data.     

Crystal and molecular structure of (r-2, c-4)-3-benzyl-2,4,5,5-tetraphenyl1,3-thiazolidine, intramolecular C–HS hydrogen bonds

The crystal and molecular structures of (r-2, c-4)-3-benzyl-2,4,5,5-tetraphenyl-1,3-thiazolidine are investigated showing the existence of C(sp²)–HS and C(sp²)–HN intramolecular contacts. The analysis of geometrical parameters shows that C–HS contacts may be treated as hydrogen bonds but C–HN do not fulfil the geometrical criteria of the existence of H-bonds. The B3LYP/6-311+G* single point calculations were performed to obtain wave functions applied later for ‘atoms in molecules’ (AIM) study. The analysis of bond critical points based on the Bader theory (AIM) supports the existence of intramolecular C–HS H-bonds.     

Investigation of C–HX (X=N, O, S) intramolecular hydrogen bond in 1-vinyl-2-(2′-heteroaryl)pyrroles by ab initio calculations

The C–HX (X=N, O, S) intramolecular hydrogen bond between the α-hydrogen of the vinyl group and the corresponding heteroatom in the series of 1-vinyl-2-(2′-heteroaryl)pyrroles was examined by ab initio calculations at the B3LYP/6-311(d,p) level. It was shown that the C–HN hydrogen bond is stronger than the C–HO hydrogen bond and the latter is, in turn, stronger than the C–HS hydrogen bond. This conclusion is supported by calculations of ¹H NMR chemical shieldings.     

Experimental and theoretical study of the intramolecular C–H···N and C–H···S hydrogen bonding effects in the 1H and 13C NMR spectra of the 2‐(alkylsulfanyl)‐5‐amino‐1‐vinylpyrroles: a particular state of amine nitrogen

In the ¹H NMR spectra of the 1‐vinylpyrroles with amino‐ and alkylsulfanyl groups in 5 and 2 positions, an extraordinarily large difference between resonance positions of the H_A and H_B terminal methylene protons of the vinyl group is discovered. Also, the one‐bond ¹J(C_β,H_B) coupling constant is surprisingly greater than the ¹J(C_β,H_A) coupling constant in pyrroles under investigation, while in all known cases, there was a reverse relationship between these coupling constants. These spectral anomalies are substantiated by quantum chemical calculations. The calculations show that the amine nitrogen lone pair is removed from the conjugation with the π‐system of the pyrrole ring so that it is directed toward the H_B hydrogen. These factors are favorable to the emergence of the intramolecular C–H_B???N hydrogen bonding in the s‐cis(N) conformation. On the other hand, the spatial proximity of the sulfur to the H_B hydrogen provides an opportunity of the intramolecular C–H_B???S hydrogen bonding in the s‐cis(S) conformation. Presence of the hydrogen bond critical points as well as ring critical point for corresponding chelate ring revealed by a quantum theory of atoms in molecules (QTAIM) approach confirms the existence of the weak intramolecular C–H???N and C–H???S hydrogen bonding. Therefore, an unusual high‐frequency shift of the H_B signal and the increase in the ¹J(C_β,H_B) coupling constant can be explained by the effects of hydrogen bonding. Copyright © 2013 John Wiley & Sons, Ltd.     

Time‐dependent density functional theory study on the electronic excited‐state geometric structure,infrared spectra,and hydrogen bonding of a doubly hydrogen‐bonded complex

The geometric structures and infrared (IR) spectra in the electronically excited state of a novel doubly hydrogen‐bonded complex formed by fluorenone and alcohols, which has been observed by IR spectra in experimental study, are investigated by the time‐dependent density functional theory (TDDFT) method. The geometric structures and IR spectra in both ground state and the S₁ state of this doubly hydrogen‐bonded FN‐2MeOH complex are calculated using the DFT and TDDFT methods, respectively. Two intermolecular hydrogen bonds are formed between FN and methanol molecules in the doubly hydrogen‐bonded FN‐2MeOH complex. Moreover, the formation of the second intermolecular hydrogen bond can make the first intermolecular hydrogen bond become slightly weak. Furthermore, it is confirmed that the spectral shoulder at around 1700 cm^?1 observed in the IR spectra should be assigned as the doubly hydrogen‐bonded FN‐2MeOH complex from our calculated results. The electronic excited‐state hydrogen bonding dynamics is also studied by monitoring some vibraitonal modes related to the formation of hydrogen bonds in different electronic states. As a result, both the two intermolecular hydrogen bonds are significantly strengthened in the S₁ state of the doubly hydrogen‐bonded FN‐2MeOH complex. The hydrogen bond strengthening in the electronically excited state is similar to the previous study on the singly hydrogen‐bonded FN‐MeOH complex and play important role on the photophysics of fluorenone in solutions. © 2009 Wiley Periodicals, Inc. J Comput Chem 2009     

Study in the effect of annealing on hydrogen retention properties of C‐90%SiC films

Carbon‐rich silicon carbide (C‐90%SiC) films as hydrogen barriers were deposited on the surface of stainless steel substrates with magnetron sputtering, and then bombarded by argon ion beam. In order to remove the argon atoms reserved during films preparation, some samples with the prepared C‐90%SiC films were thermally annealed for 30 min at 473, 673 and 873 K in vacuum, respectively. These samples together with the un‐annealed ones were then irradiated by a 5 keV hydrogen ion beam. SEM was used to investigate the surface micrograph of those films and SIMS was used to measure the mass spectra of positive species and the depth distribution of argon and hydrogen in the samples. A remarkable decrease in hydrogen intensity in the substrates with annealing indicates that annealing for removing argon can effectively improve hydrogen retention properties of the C‐90%SiC films. Copyright © 2008 John Wiley & Sons, Ltd.     

Theoretical study of the Si–H group as potential hydrogen bond donor

The ability of the Si–H group as hydrogen bond (HB) donor has been studied theoretically. Most of the selected molecules include the Si–H group in a polar environment that could produce an electron deficiency on the hydrogen atom. In addition, analogous derivatives where the silicon atom has been replaced by a carbon atom have been considered. In all cases, ammonia has been used as HB acceptor. The calculations have been carried out at the MP2/6‐311++G** computational level. The electron density of the complexes has been characterized within the atoms in molecules (AIM) framework. A search in the Cambridge Structural Database (CSD) has been carried out to verify the existence of this kind of interactions in solid phase. The results of the theoretical study on these HB complexes between ammonia and the silicon derivatives provides long HB distances (2.4 to 3.2 Å) and small interaction energies (?2.4 to ?0.2 kcal/mol). In all cases, the HBs of the corresponding carbon analogs show shorter interaction distances corresponding to stronger complexes. The CSD search provides a small number of short interactions between Si and other heavy atoms in agreement with the small stabilizing energy of the Si–H?N HB and the lack of SiH bond in polar environment within the database. © 2002 John Wiley & Sons, Inc. Int J Quantum Chem, 2001     

Crystal structure and hydrogen bonding in the hydrated cocrystalline salt tryptaminium–3,5‐dinitrobenzoate–quinoline–water (3/3/2/2)

The study of ternary systems is interesting because it introduces the concept of molecular preference/competition into the system where one molecule may be displaced because the association between the other two is significantly stronger. Current definitions of a tertiary system indicate that solvent molecules are excluded from the molecule count of the system and some of the latest definitions state that any molecule that is not a solid in the parent form at room temperature should also be excluded from the molecule count. In the structure of the quinoline adduct hydrate of tryptaminium 3,5‐dinitrobenzoate, 3C₁₀H₁₃N₂⁺·3C₇H₃N₂O₆⁻·2C₉H₇N·2H₂O, the asymmetric unit comprises multiple cation and anion species which are conformationally similar among each type set. In the crystal, a one‐dimensional hydrogen‐bonded supramolecular structure is generated through extensive intra‐ and inter‐unit aminium N—H…O and N—H…N, and water O—H…O hydrogen bonds. Within the central‐core hydrogen‐bonding associations, conjoined cyclic R₄⁴(10), R₅³(10) and R₄⁴(12) motifs are generated. The unit is expanded into a one‐dimensional column‐like polymer extending along [010]. Present also in the crystal packing of the structure are a total of 19 π–π interactions involving both cation, anion and quinoline species [ring‐centroid separation range = 3.395 (3)–3.797 (3) Å], as well as a number of weak C—H…O hydrogen‐bonding associations. The presence of the two water molecules in the crystal structure is considered to be the principal causative factor in the low symmetry of the asymmetric unit.     

The O–H···O, O–H···N and C–H···O hydrogen bonds in 1,4-dimethylpiperazine mono-betaine monohydrate

1,4-Dimethylpiperazine mono-betaine (1-carboxymethyl-1,4-dimethylpiperazinium inner salt, MBPZ) crystallizes as monohydrate. The crystals are orthorhombic, space group Pccn. Two MBPZ molecules and two water molecules form a cyclic oligomer, (MBPZ·H₂O)₂. The O–H···O and O–H···N hydrogen bonds are of 2.769(1) and 2.902(1) Å, respectively. The dimers interact with the neighboring molecules through the C–H···O hydrogen bonds of 3.234(1) Å. The piperazine ring assumes a chair conformation with the N(4)–CH₃ and N⁺(1)–CH₂COO⁻ groups in the equatorial position and the N⁺(1)–CH₃ group in the axial one. The FTIR spectrum is compared with that calculated by the B3LYP/6-31G(d,p) level of theory.     

DFT study on the hydrogen bonds of phenol–cyclohexanone and phenol–H2O2 in the Baeyer–Villiger oxidation

Hydrogen bonds of phenol–cyclohexanone and phenol–H₂O₂ in the studied Baeyer–Villiger (B–V) oxidation have been investigated by HF, B3LYP, and MP2 methods with various basis sets. The accurate single‐point energies were performed using CCSD(T)/6‐31+G(d,p) and CCSD(T)/aug‐cc‐pVDZ on the optimized geometries of MP2/6‐31+G(d,p). It has been confirmed that B3LYP/6‐31+G(d,p) could be used to study such hydrogen bonds. Energetic analysis of complexes was carried out using the Xantheas method with BSSE corrected by CP method. Orbital energy order (ε) illuminated that phenol with good hydrogen donor‐acceptor property can interact with cyclohexanone or H₂O₂ to form hydrogen bound complexes, and the binding energies (BE) range from ?4.38 to ?14.06 kcal mol^?1. NBO analysis indicated that the redistribution of atomic charges in the complexes facilitated nucleophilic attack of H₂O₂ on cyclohexanone. The calculated results match remarkably well with the experimental phenomena. © 2008 Wiley Periodicals, Inc. Int J Quantum Chem, 2009     

Adsorption behaviour of a CdII–triazole MOF for butan‐2‐one in a single‐crystal‐to‐single‐crystal (SCSC) fashion: the role of hydrogen bonding and C—H…π interactions

The adsorption behaviour of the Cd^II–MOF {[Cd(L)₂(ClO₄)₂]·H₂O ( 1 ), where L is 4‐amino‐3,5‐bis[3‐(pyridin‐4‐yl)phenyl]‐1,2,4‐triazole, for butan‐2‐one was investigated in a single‐crystal‐to‐single‐crystal (SCSC) fashion. A new host–guest system that encapsulated butan‐2‐one molecules, namely poly[[bis{μ₃‐4‐amino‐3,5‐bis[3‐(pyridin‐4‐yl)phenyl]‐1,2,4‐triazole}cadmium(II)] bis(perchlorate) butanone sesquisolvate], {[Cd(C₂₄H₁₈N₆)₂](ClO₄)₂·1.5C₄H₈O}_n, denoted C₄H₈O@Cd‐MOF ( 2 ), was obtained via an SCSC transformation. MOF 2 crystallizes in the tetragonal space group P4₃2₁2. The specific binding sites for butan‐2‐one in the host were determined by single‐crystal X‐ray diffraction studies. N—H…O and C—H…O hydrogen‐bonding interactions and C—H…π interactions between the framework, ClO₄^? anions and guest molecules co‐operatively bind 1.5 butan‐2‐one molecules within the channels. The adsorption behaviour was further evidenced by ¹H NMR, IR, TGA and powder X‐ray diffraction experiments, which are consistent with the single‐crystal X‐ray analysis. A ¹H NMR experiment demonstrates that the supramolecular interactions between the framework, ClO₄^? anions and guest molecules in MOF 2 lead to a high butan‐2‐one uptake in the channel.     

C–C bridged Ni(II) complexes bearing β‐keto‐9‐fluorenyliminato ligands prepared by different in situ bonding mechanisms and their use in catalytic (co)polymerization of norbornene and styrene

Two C–C bridged Ni(II) complexes bearing β‐keto‐9‐fluorenyliminato ligands with electron‐withdrawing groups (─CF₃), Ni{PhC(O)CHC[N(9‐fluorenyl)]CF₂}₂ (Ni 1 ) and Ni{CF₃C(O)CHC[N(9‐fluorenyl)]Ph}₂ (Ni 2 ), were synthesized by metal coordination reaction and different in situ bonding mechanisms. The C–C bridged bonds of Ni 1 were formed by in situ intramolecular trifluoromethyl and 9‐fluorenyl carbon–carbon cross‐coupling reaction and those of Ni 2 were formed by in situ intramolecular 9‐fluorenyl carbon–carbon radical coupling reaction mechanism. The obtained complexes were characterized using ¹H NMR spectroscopy and elemental analyses. The crystal and molecular structures of Ni 1 and Ni 2 with C–C bridged configuration were determined using X‐ray diffraction. Ni 1 and Ni 2 were used as catalysts for norbornene (NB) polymerization after activation with B(C₆F₅)₃ and the catalytic activities reached 10⁶ g_polymer mol_Ni^?1 h^?1. The copolymerization of NB and styrene catalyzed by the Ni 1 /B(C₆F₅)₃ system showed high activity (10⁵ g_polymer mol_Ni^?1 h^?1) and the catalytic activities decreased with increasing feed content of styrene. All vinyl‐type copolymers exhibited high molecular weight (10⁴ g mol^?1), narrow molecular weight distribution (M_w/M_n = 1.71–2.80), high styrene insertion ratios (11.13–50.81%) and high thermal stability (T_d > 380°C) and could be made into thin films with high transparency in the visible region (400–800 nm).     

Ab initio through‐space/bond interaction analysis of the long C–C bonds in Bi(anthracene‐9,10‐dimethylene) photoisomers

The bi(anthracene‐9,10‐dimethylene) photoisomer has remarkably long C–C single bonds. To examine the lengthening of the C–C bond, we propose a novel procedure for quantitatively analyzing orbital interactions in a molecule at the level of the ab initio molecular orbital method. In this procedure, we can cut off the specific through‐space/bond interactions in a molecule by artificially increasing the absolute magnitude of the exponents in a Gaussian function. Then, the spatial orbital interactions were perfectly cut off, and, each term that makes up the total energy, that is, the nuclear–electron attractions, the electron–electron repulsions, and the nuclear–nuclear repulsions cancel each other. Several model molecules of the photoisomer were analyzed by this procedure. It was found that the orbital interaction between the p orbital on the benzene ring and the σ* orbital on the C–C bond in question, σ→σ* electron transfer through π orbital, weakens the C–C bond efficiently when these orbitals were located in the “periplanar” conformation. © 2001 John Wiley & Sons, Inc. Int J Quantum Chem, 2001     

Time‐dependent density functional theory study on the electronic excited‐state hydrogen‐bonding dynamics of 4‐aminophthalimide (4AP) in aqueous solution: 4AP and 4AP–(H2O)1,2 clusters

The time‐dependent density functional theory (TDDFT) method has been carried out to investigate the excited‐state hydrogen‐bonding dynamics of 4‐aminophthalimide (4AP) in hydrogen‐donating water solvent. The infrared spectra of the hydrogen‐bonded solute?solvent complexes in electronically excited state have been calculated using the TDDFT method. We have demonstrated that the intermolecular hydrogen bond C? O···H? O and N? H···O? H in the hydrogen‐bonded 4AP?(H₂O)₂ trimer are significantly strengthened in the electronically excited state by theoretically monitoring the changes of the bond lengths of hydrogen bonds and hydrogen‐bonding groups in different electronic states. The hydrogen bonds strengthening in the electronically excited state are confirmed because the calculated stretching vibrational modes of the hydrogen bonding C?O, amino N? H, and H? O groups are markedly red‐shifted upon photoexcitation. The calculated results are consistent with the mechanism of the hydrogen bond strengthening in the electronically excited state, while contrast with mechanism of hydrogen bond cleavage. Furthermore, we believe that the transient hydrogen bond strengthening behavior in electroniclly excited state of chromophores in hydrogen‐donating solvents exists in many other systems in solution. © 2010 Wiley Periodicals, Inc. J Comput Chem, 2010     

Influence of intermolecular hydrogen bonding on IR-spectroscopic properties of (R)-(−)-1-phenylglycinium hydrogen squarate monohydrate in solid-state. IR-LD, Raman spectroscopy and theoretical study

Influence of the intermolecular interactions in solid phase on the overlapped IR-spectroscopic pattern of (R)-(−)-1-phenylglycinium hydrogen squarate monohydrate is studied experimentally by means of a complex approach, including IR-LD spectroscopy of oriented solid-samples as suspension in nematic liquid crystal, reducing difference procedure for polarized spectra interpretation, deconvolution and curve-fitting procedures. Raman ones completes the IR-spectroscopic data. The experimental results are supported with theoretical ones and the calculated frequencies obtained on UHF/6-311++G^** level of theory and basis and scaled with a factor of 0.8929 correlated well with experimental observed data, giving a standard deviation of 9 cm⁻¹ for so-called non-characteristic bands.     

Chemically Triggered C–ON Bond Homolysis in Alkoxyamines. Part 2: DFT Investigation and Application of the pH Effect on NMP

In recent work, a 15‐fold increase in the C–ON bond homolysis rate constant k_d of 4‐pyridylethyl‐SG1‐based alkoxyamine was observed upon protonation of the pyridyl moiety in organic solvent. In this report, the pH dependence of k_d (pK_a = 4.7) is investigated in D₂O/CD₃OD (v/v 1:1). A 64‐fold increase in k_d is observed at acidic pH. Calculations show that the increase in k_d upon protonation is due to both an increase in the stabilization of the protonated 4‐pyridylethyl radical and an increase of the destabilization of the starting materials through an increase in the polarity of the alkyl fragment. This new alkoxyamine is applied to NMP of styrene and sodium styrene sulfonate.     

Ionic organoboranes. Part 7. Molecular orbital study of electron distribution in the [7.10]hemiousenide ion; explanation for the anomalous B NMR spectrum

The ¹¹B NMR spectrum of the [7.10²]hemiousenide ion (C₇H₆B₁₀H₉⁻) demonstrates ground state +T cage to ring electron donation from the region of the two apical borons. The chemically non-equivalent apical borons give an apparent singlet NMR absorption and thus appear to be in very similar electronic environments, even though they are unsymmetrically arranged relative to the cationic ring. Ab initio 3-21G(∗) and semi-empirical PM3 calculations suggest that the π-system of the ring only interacts with cage molecular orbitals that are symmetrical relative to both apical borons in B₁₀H₁₀²− and that the electron density about the two apical borons is essentially identical in the [7.10²]hemiousenide ion. Significant ground state electron donation from cage to ring is observed, consonant with conclusions from previous polarographic studies.