A Perylene Bisimide Cyclophane as a “Turn‐On” and “Turn‐Off” Fluorescence Probe

A rigid, covalently linked perylene‐3,4:9,10‐tetracarboxylic acid bisimide (PBI) cyclophane was synthesized by imidization of a bay‐substituted perylene bisanhydride with p‐xylylenediamine. The interchromophoric distance of approximately 6.5 Å establishes an ideal rigid cavity for the encapsulation of large aromatic compounds such as perylene and anthracene with binding constants up to 4.6×10⁴ M ^?1 (in CHCl₃). For electron‐poor guest molecules, the complexation process is accompanied by a significantly increased fluorescence, whereas the emission intensity is dramatically quenched by more electron‐rich guests because of the formation of charge‐transfer complexes. Furthermore, the influence of the PBI core twist on the binding constant results in a remarkable selectivity towards more flexible aromatic guest molecules.     

Cooperative Self‐Assembly of a Quaternary Complex Formed by Two Cucurbit[7]uril Hosts,Cyclobis(paraquat‐p‐phenylene), and a “Designer” Guest

The self‐assembly in aqueous solution of the well‐known cyclophane, cyclobis(paraquat‐p‐phenylene) (BB⁴⁺), and two cucurbit[7]uril (CB7) hosts around a simple hydroquinol‐based, diamine guest (GH₂²⁺) was investigated by ¹H NMR and electronic absorption spectroscopies, electrospray mass spectrometry and DFT computations. The formation of a quaternary supramolecular assembly [GH₂²⁺⋅BB⁴⁺⋅ (CB7)₂] was shown to be a very efficient process, which takes place not only because of the attractive forces between each of the hosts and the guest, but also because of the lateral interactions between the hosts in the final assembly. This complementary set of attractive interactions results in clear cooperative binding effects that help overcome the entropic barriers for multiple component assembly.     

Cooperative Self‐Assembly of a Quaternary Complex Formed by Two Cucurbit[7]uril Hosts,Cyclobis(paraquat‐p‐phenylene), and a “Designer” Guest

The self‐assembly in aqueous solution of the well‐known cyclophane, cyclobis(paraquat‐p‐phenylene) (BB⁴⁺), and two cucurbit[7]uril (CB7) hosts around a simple hydroquinol‐based, diamine guest (GH₂²⁺) was investigated by ¹H NMR and electronic absorption spectroscopies, electrospray mass spectrometry and DFT computations. The formation of a quaternary supramolecular assembly [GH₂²⁺?BB⁴⁺? (CB7)₂] was shown to be a very efficient process, which takes place not only because of the attractive forces between each of the hosts and the guest, but also because of the lateral interactions between the hosts in the final assembly. This complementary set of attractive interactions results in clear cooperative binding effects that help overcome the entropic barriers for multiple component assembly.     

Synthesis and Structural Characterization of Three New Inorganic ＂Host-gues＂ Polyoxomolybdates

Since two interesting inorganic “host‐guest” polyoxomolybdates 1 and 2 have been reported previously, we have now succeeded in selectively isolating three new acetated “host‐guest” polyoxomolybdates 3–5, which considerably extend the range of structures in the cyclic polyoxomolybdate catalogue. 3 crystallizes in the triclinic space group P‐1 with a = 1.22235(1) nm, b = 1.52977(2) nm, c = 1.54022(1) nm, a = 113.746(1)°, β = 96.742(1)°, γ = 101.564(1)°, V = 2.51892(4) nm³, Z =1, D_c = 2.568 g. cm^?3. 4 and 5 crystallize in the monoclinic system: P2(1)/n, a = 1.08298(2) nm, b = 1.54029(1) nm, c = 2.78893(5) nm, β =94.2730(10)°, V = 4.63929(12) nm³, Z = 2 and D_c = 2.671 g. cm^?3 for 4, and C2/c, a =2.59907(8) nm, b = 1.65992(3) nm, c = 2.28473(7) nm, β‐93.4370(10)°, V = 9.8392(5) nm³, Z = 4 and D_c = 2.556 g. cm^?3 for 5. The structures of 3, 4 and 5 consist of 18‐membered “host‐guest” polyoxoanions [ Na (X)₂| ∈ |(μ_3‐OH)₄Mo^y₈Mo^VI₁₀52(μ₂‐CH₃COO)₂]^?(R+9 (X = CH₃COO^?for 3, DMF for 4 and H₂O for 5), which are connected via Na* ions or hydrogen bonds into infinite extended frameworks.     

Modular Synthesis and Dynamics of a Variety of Donor–Acceptor Interlocked Compounds Prepared by Click Chemistry

A series of donor–acceptor [2]‐, [3]‐, and [4]rotaxanes and self‐complexes ([1]rotaxanes) have been synthesized by a threading‐followed‐by‐stoppering approach, in which the precursor pseudorotaxanes are fixed by using Cu^I‐catalyzed Huisgen 1,3‐dipolar cycloaddition to attach the required stoppers. This alternative approach to forming rotaxanes of the donor–acceptor type, in which the donor is a 1,5‐dioxynaphthalene unit and the acceptor is the tetracationic cyclophane cyclobis(paraquat‐p‐phenylene), proceeds with enhanced yields relative to the tried and tested synthetic strategies, which involve the clipping of the cyclophane around a preformed dumbbell containing π‐electron‐donating recognition sites. The new synthetic approach is amenable to application to highly convergent sequences. To extend the scope of this reaction, we constructed [2]rotaxanes in which one of the phenylene rings of the tetracationic cyclophane is perfluorinated, a feature which significantly weakens its association with π‐electron‐rich guests. The activation barrier for the shuttling of the cyclophane over a spacer containing two triazole rings was determined to be (15.5±0.1) kcal mol^?1 for a degenerate two‐station [2]rotaxane, a value similar to that previously measured for analogous degenerate compounds containing aromatic or ethylene glycol spacers. The triazole rings do not seem to perturb the shuttling process significantly; this property bodes well for their future incorporation into bistable molecular switches.     

Reactivity of Dialumane and “Dialumene” Compounds toward Alkenes

The reactions of dialumane [L(thf)Al? Al(thf)L] ( 1 , L=[{(2,6‐iPr₂C₆H₃)NC(Me)}₂]^2?) with stilbene and styrene afforded the oxidation/insertion products [L(thf)Al(CH(Ph)? CH(Ph))AlL] ( 2 ) and [L(thf)Al(CH(Ph)? CH₂)Al(thf)L] ( 3 ), respectively. In the presence of Na metal, precursor 1 reacted with butadienes, possibly through the reduced “dialumene” or the “carbene‐like” :AlL species, to yield aluminacyclopentenes [LAl(CH₂C(Me)?C(Me)CH₂)Na]_n ( 4 a ) and [Na(dme)₃][LAl(CH₂C(Me)?CHCH₂)] ( 4 b , dme=dimethoxyethane) as [1+4] cycloaddition products, as well as the [2+4] cycloaddition product 1,6‐dialumina‐3,8‐cyclodecadiene, [{Na(dme)}₂][LAl(CH₂C(Me)?C(Me)CH₂)₂AlL] ( 5 ). The possible mechanisms of the cycloaddition reactions were studied by using DFT computations.     

Chiral Supramolecular Switches Based on (R)‐Binaphthalene–Bipyridinium Guests and Cucurbituril Hosts

We designed and synthesized the three molecular tweezers 1 a – c ⁴⁺ containing an electron acceptor 4,4′‐bipyridinium (BPY²⁺) unit in each of the two arms and an (R)‐2,2′‐dioxy‐1,1′‐binaphthyl (BIN) unit that plays the role of chiral centre and the hinge of the structure. Each BPY²⁺ unit is connected to the BIN hinge by an alkyl chain formed by two‐ ( 1 a ⁴⁺), four‐ ( 1 b ⁴⁺), or six‐CH₂ ( 1 c ⁴⁺) groups. The behavior of 1 a – c ⁴⁺ upon chemical or photochemical reduction in the absence and in the presence of cucurbit[8]uril (CB[8]) or cucurbit[7]uril (CB[7]) as macrocyclic hosts for the bipyridinium units has been studied in aqueous solution. A detailed analysis of the UV/Vis absorption and circular dichroism (CD) spectra shows that the helicity of the BIN unit can be reversibly modulated by reduction of the BPY²⁺ units, or by association with cucurbiturils. Upon reduction of 1 a – c ⁴⁺ compounds, the formed BPY^{+ .} units undergo intramolecular dimerization with a concomitant change in the BIN dihedral angle, which depends on the length of the alkyl spacers. The alkyl linkers also play an important role in association to cucurbiturils. Compound 1 a ⁴⁺, because of its short carbon chain, associates to the bulky CB[8] in a 1:1 ratio, whereas in the case of the smaller host compound CB[7] a 1:2 complex is obtained. Compounds 1 b ⁴⁺ and 1 c ⁴⁺, which have longer linkers, associate to two cucurbiturils regardless of their sizes. In all cases, association with CB[8] causes an increase of the BIN dihedral angle, whereas the formation of CB[7] complexes causes an angle decrease. Reduction of the CB[8] complexes results in an enhancement of the BPY^{+ .} dimerization with respect to free 1 a – c ⁴⁺ and causes a noticeable decrease of the BIN dihedral angle, because the BPY^{+ .} units of the two arms have to enter into the same macrocycle. The dimer formation in the CB[8] complexes characterized by a 1:2 ratio implies the release of one macrocycle showing that the binding stoichiometry of these host–guest complexes can be switched from 1:2 to 1:1 by changing the redox state of the guest. When the reduction is performed on the CB[7] complexes, dimer formation is totally inhibited, as expected because the CB[7] cavity cannot host two BPY^{+ .} units.     

Self-complementary

Three [3]catenanes with cavities large enough to accommodate aromatic guests have been designed and synthesized (yields = 5-20 %) by means of kinetically controlled self-assembly processes. The X-ray structural analysis of one of three [3]catenanes confirmed the presence of a rectangular cavity (dimensions = 7 x 11 A) lined by pi-electron-rich recognition sites and hydrogen-bond acceptor groups. In spite of their apparently ideal recognition features, none of these [3]catenanes bind guests incorporating a pi-electron-deficient bipyridinium unit. However, the template-directed syntheses of the [3]catenanes also produce, in yields of 2-23%, [2]catenanes incorporating a 1,5-dioxynaphtho[38]crown-10 interlocked with a bipyridinium-based tetracationic cyclophane. The X-ray structural analyses of two of these [2]catenanes revealed that a combination of [pi...pi] and [C-H...pi] interactions is responsible for the formation of supramolecular homodimers in the solid state. 1H NMR spectroscopic investigations of the four [2]catenanes demonstrated that supramolecular homodimers are also formed (Ka= 17-31M(-1), T= 185 K) in (CD3)2CO solutions. Dynamic 1H NMR spectroscopy revealed that the 1,5-dioxynaphtho[38]crown-10 and tetracationic cyclophane components in the four [2]catenanes and in the three [3]catenanes circumrotate (deltaGc(not equal to) = 9-14 kcal mol(-1)) through each other's cavity in (CD3)2CO. Similarly, the 1,5-dioxynaphthalene and the bipyridinium ring systems rotate (deltaGc(not equal to) =10-14 kcal mol(-1)) about their [O...O] and [N...N] axes, respectively, in solution.     

Cucurbit[7]uril⋅Guest Pair with an Attomolar Dissociation Constant

Host?guest complexes between cucurbit[7] (CB[7]) or CB[8] and diamantane diammonium ion guests 3 or 6 were studied by ¹H NMR spectroscopy and X‐ray crystallography. ¹H NMR competition experiments revealed that CB[7]? 6 is among the tightest monovalent non‐covalent complexes ever reported in water with K_a=7.2×10¹⁷ M ^?1 in pure D₂O and 1.9×10¹⁵ M ^?1 in D₂O buffered with NaO₂CCD₃ (50 mM ). The crystal structure of CB[7]? 6 allowed us to identify some of the structural features responsible for the ultratight binding, including the distance between the NMe₃⁺ groups of 6 (7.78 Å), which allows it to establish 14 optimal ion‐dipole interactions with CB[7], the complementarity of the convex van der Waals surface contours of 6 with the corresponding concave surfaces of CB[7], desolvation of the C?O portals within the CB[7]? 6 complex, and the co‐linearity of the C₇ axis of CB[7] with the N⁺???N⁺ line in 6 . This work further blurs the lines of distinction between natural and synthetic receptors.     

Control of the stoichiometry in host-guest complexation by redox chemistry of guests: inclusion of methylviologen in cucurbit[8]uril

The binding stoichiometry of a host-guest complex can be effectively controlled by the redox chemistry of the guest: a 1:1 inclusion complex of methylviologen dication (MV2+) in cucurbit[8]uril (CB[8]) converts completely and reversibly to a 2:1 inclusion complex of cation radical (MV+.) in CB[8] upon the reduction of the guest.     

Using “Threading Followed by Shrinking” to Synthesize Highly Stable Dialkylammonium‐Ion‐Based Rotaxanes

Herein, we report a “threading followed by shrinking” approach for the synthesis of rotaxanes by using an “oxygen‐deficient” macrocycle that contained two arylmethyl sulfone units and the dumbbell‐shaped salt bis(3,5‐dimethylbenzyl)ammonium tetrakis(3,5‐trifluoromethylphenyl)borate as the host and guest components, respectively. The extrusion of SO₂ from both of the arylmethyl sulfone units of the macrocyclic component in the corresponding [2]pseudorotaxane resulted in a [2]rotaxane that was sufficiently stable to maintain its molecular integrity in CD₃SOCD₃ at 393 K for at least 5 h.     

Side‐chain polypseudorotaxanes by threading cucurbit[7]uril onto poly‐N‐n‐butyl‐N′‐(4‐vinylbenzyl)‐4,4′‐bipyridinium bromide chloride: Synthesis,characterization, and properties

A novel side‐chain polypseudorotaxanes P4VBVBu/CB[7] was synthesized from poly‐N‐n‐butyl‐N′‐(4‐vinylbenzyl)‐4,4′‐bipyridinium bromide chloride (P4VBVBu) and cucurbit [7]uril (CB[7]) in water by simple stirring at room temperature. CB[7] beads are localized on viologen units in side chains of polypseudorotaxanes as shown by ¹H NMR, IR, XRD, and UV–vis studies, and it is considered that the hydrophobic and charge‐dipole interactions are the driving forces. TGA data show that thermal stability of the polypseudorotaxanes increases with the adding of CB[7] threaded. DLS data show that P4VBVBu and CB[7] could form polypseudorotaxanes, and the average hydrodynamic radius of the polypseudorotaxanes increases with increasing the concentration of CB[7]. The typical cyclic voltammograms indicate that the oxidation reduction characteristic of P4VBVBu is remarkably affected by the addition of CB[7] because of the formation of polypseudorotaxanes and the shielding effects of CB[7] threaded on the viologen units of polypseudorotaxanes. With the increase of the concentration of KBr or K₂SO₄, the formation of the polypseudorotaxanes was inhibited due to the shielding effects of both Br^? or SO to viologen ion and K⁺ to CB[7] by UV–vis. © 2010 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem 48: 2135–2142, 2010     

Glycoluril‐Derived Molecular Clips are Potent and Selective Receptors for Cationic Dyes in Water

Molecular clip 1 remains monomeric in water and engages in host–guest recognition processes with suitable guests. We report the K_a values for 32 1? guest complexes measured by ¹H NMR, UV/Vis, and fluorescence titrations. The cavity of 1 is shaped by aromatic surfaces of negative electrostatic potential and therefore displays high affinity and selectivity for planar and cationic aromatic guests that distinguishes it from CB[n] receptors that prefer aliphatic over aromatic guests. Electrostatic effects play a dominant role in the recognition process whereby ion–dipole interactions may occur between ammonium ions and the C=O groups of 1 , between the SO₃^? groups of 1 and pendant cationic groups on the guest, and within the cavity of 1 by cation–π interactions. Host 1 displays a high affinity toward dicationic guests with large planar aromatic surfaces (e.g. naphthalene diimide NDI+ and perylene diimide PDI+) and cationic dyes derived from acridine (e.g. methylene blue and azure A). The critical importance of cation–π interactions was ascertained by a comparison of analogous neutral and cationic guests (e.g. methylene violet vs. methylene blue; quinoline vs. N‐methylquinolinium; acridine vs. N‐methylacridinium; neutral red vs. neutral red H⁺) the affinities of which differ by up to 380‐fold. We demonstrate that the high affinity of 1 toward methylene blue (K_a=3.92×10⁷ m ^?1; K_d=25 nm ) allows for the selective sequestration and destaining of U87 cells stained with methylene blue.     

“Complex” versus “free radical” mechanism for the catalytic decomposition of H2O2 by ferric ions

Kinetic and spectrophotometric measurements made during the Fe³⁺ ion catalyzed decomposition of H₂O₂ have been analyzed using the computer simulation method. Improved values of the rate constants of the “complex scheme” and of the molar absorptivities ofthe intermediates were obtained: k₃/K_M = 4.94 M^?1 min^?1, k₄ = 193 M^?1 min^?1, ε_I/K_M = 52.3 M^?2 cm^?1, ε_II = 25.7 M^?1 cm^?1. The simulation revealed details of the reaction which were unavailable by other means and which explained several features of its kinetics. The total amount of O₂ evolved in the reaction using [H₂O₂] ～ 10^?2 M has been calculated and found to be nearly stoichiometric. O₂ evolution experiments in this region cannot, thus, distinguish between the “complex mechanism” predicting nearly stoichiometric evolution of O₂ and the “free radical mechanism” predicting exactly stoichiometricamounts of O₂. There are discrepancies within the “free radical scheme” with regard to the correct values of the rate constants to fit the reactions of H₂O₂ both with Fe²⁺ and Fe³⁺ ions, as well as other reactions assumed to proceed via free radicals.     

Ruthenium Complex “Light Switches” that are Selective for Different G‐Quadruplex Structures

Recognition and regulation of G‐quadruplex nucleic acid structures is an important goal for the development of chemical tools and medicinal agents. The addition of a bromo‐substituent to the dipyridylphenazine (dppz) ligands in the photophysical “light switch”, [Ru(bpy)₂dppz]²⁺, and the photochemical “light switch”, [Ru(bpy)₂dmdppz]²⁺, creates compounds with increased selectivity for an intermolecular parallel G‐quadruplex and the mixed‐hybrid G‐quadruplex, respectively. When [Ru(bpy)₂dppz‐Br]²⁺ and [Ru(bpy)₂dmdppz‐Br]²⁺ are incubated with the G‐quadruplexes, they have a stabilizing effect on the DNA structures. Activation of [Ru(bpy)₂dmdppz‐Br]²⁺ with light results in covalent adduct formation with the DNA. These complexes demonstrate that subtle chemical modifications of Ru^II complexes can alter G‐quadruplex selectivity, and could be useful for the rational design of in vivo G‐quadruplex probes.     

The electrochemically-driven decomplexation/recomplexation of inclusion adducts of ferrocene derivatives with an electron-accepting receptor

The tetracationic cyclophane, cyclobis(paraquat-4,4'-biphenylene), binds 1,1'-disubstituted ferrocene-based polyethers as a result of (i) [pi...pi] stacking between the pi-electron-deficient bipyridinium units and the pi-electron-rich cyclopentadienyl rings and (ii) [C-H...O] hydrogen bonds between the alpha-bipyridinium hydrogen atoms and the polyether oxygen atoms. However, even the presence of a bulky tetraarylmethane group--which is too large to thread through the cavity of the cyclophane host--at the end of each of the two polyether substituents of the ferrocene-containing guest does not discourage adduct formation of the inclusion type. Thus, in these adducts, the ferrocene unit of the guest is located inside the cavity of the host with its two polyether chains protruding outward from the same side of the host. The alternative pseudorotaxane geometry is not observed in solutions of these 1:1 adducts. The host-guest adducts display absorption bands in the visible spectral region, characteristic of charge-transfer interactions. In the case of one of these adducts, reversible decomplexation/recomplexation takes place upon electrochemical oxidation/reduction of the ferrocene-based unit or upon reduction/oxidation of the tetracationic cyclophane.     

Toward Electrochemically Controllable Tristable Three‐Station [2]Catenanes

Encouraged by the prospect of producing an electrochemical, color‐switchable red–green–blue (RGB) dye compound, we have designed, synthesized, and characterized two three‐station [2]catenanes. Both are composed of macrocyclic polyethers containing three π‐electron‐rich stations, which act as recognition sites for a π‐electron‐deficient tetracationic cyclophane. The molecular structures of the two three‐station [2]catenanes were characterized fully by mass spectrometry and ¹H NMR spectroscopy. To anticipate the relative occupancies of the three stations in each [2]catenane by the cyclophane, model compounds with the same constitutions in the vicinity of the stations were synthesized. The relative ground‐state populations of the three stations occupied in both [2]catenanes were estimated from the thermodynamic parameters for 1:1 complexes between all these model compounds and the cyclophane, obtained from isothermal titration calorimetry (ITC). The electrochemical and electromechanical properties of the three‐station [2]catenanes were analyzed by cyclic voltammetry (CV), differential pulse voltammetry (DPV), and spectroelectrochemistry (SEC). The first three‐station [2]catenane was found to behave like a bistable system, whereas the second can be described as a quasi‐tristable system.     

Surface‐Bound Cucurbit[8]uril Catenanes on Magnetic Nanoparticles Exhibiting Molecular Recognition

We demonstrate the preparation of surface‐bound cucurbit[8]uril (CB[8]) catenanes on silica nanoparticles (NPs), where CB[8] was employed as a tethered supramolecular “handcuff” to selectively capture target guest molecules. In this catenane, CB[8] was threaded onto a methyl viologen (MV²⁺) axle and immobilized onto silica NPs. The formation of CB[8] catenanes on NPs were confirmed by UV/Vis titration experiments and lithographic characterization, demonstrating a high density of CB[8] on the silica NPs surface, 0.56 nm^?2. This CB[8] catenane system exhibits specific molecular recognition towards certain aromatic molecules such as perylene bis(diimide), naphthol and aromatic amino acids, and thus it can act as a nanoscale molecular receptor for target guests. Furthermore, we also demonstrate its use as an efficient and recyclable nano‐platform for peptide separation. By embedding magnetic NPs inside silica NPs, separation could be achieved by simply applying an external magnetic field. Moreover, the peptides captured by the catenanes could be released by reversible single‐electron reduction of MV²⁺. The entire process demonstrated high recoverability.     

Blurring the Lines between Host and Guest: A Chimeric Receptor Derived from Cucurbituril and Triptycene

We report the synthesis and X‐ray crystal structure of a cucurbituril–triptycene chimeric receptor ( 1 ). Host 1 binds to guests typical of CB[6]–CB[8], but also binds to larger guests such as blue box ( 20 ) and the Fujita square ( 22 ). Intriguingly, the geometries of the 1 ? 20 and 1 ? 22 complexes blur the lines between host and guest in that both components fulfill both roles within each complex. The fluorescence output of 1 is fully quenched by the formation of complexes with pyridinium‐derived guests.     

“On‐Droplet” Chemistry: The Cycloaddition of Diethyl Azodicarboxylate and Quadricyclane

Sharpless and co‐workers previously studied the [2σ+2σ+2π] cycloaddition of diethyl azodicarboxylate (DEAD) and quadricyclane and reported that the addition of water to the neat reagents caused an acceleration in the reaction rate, giving birth to what has been called “on‐water” chemistry. We have examined the same reaction in aqueous microdroplets (ca. 5 μm diameter) and find that the cycloaddition reaction is accelerated even further (by a factor of 10²) compared to that of the “on‐water” reaction reported previously. The trends of acceleration in solvents other than water demonstrated by Sharpless and colleagues were replicated in the corresponding microdroplet experiments. We also find that DEAD reacts with itself to form a variety of hydrazine carboxylates and intercept intermediates of this reaction in microdroplets to validate a mechanism proposed herein. We suggest that “on‐droplet” chemistry, similar to “on‐water” chemistry, may be a general process of synthetic interest.