Synthesis of the (3R,6S)-3-amino-6-(2,3-difluorophenyl)azepan-2-one of telcagepant (MK-0974), a calcitonin gene-related peptide receptor antagonist for the treatment of migraine headache

Two novel routes have been developed to the (3 R,6 S)-3-amino-6-(2,3-difluorophenyl)-1-(2,2,2-trifluoroethyl)azepan-2-one 2 of the CGRP receptor antagonist clinical candidate telcagepant (MK-0974, 1). The first employs a ring-closing metathesis of the styrene 7 as the key reaction, while the second makes use of a highly diastereoselective Hayashi-Miyaura Rh-catalyzed arylboronic acid addition to nitroalkene 16. The latter route has been implemented to produce multigram quantities of telcagepant for extensive preclinical evaluation.     

A concise synthesis of a β-lactamase inhibitor

MK-7655 (1) is a β-lactamase inhibitor in clinical trials as a combination therapy for the treatment of bacterial infection resistant to β-lactam antibiotics. Its unusual structural challenges have inspired a rapid synthesis featuring an iridium-catalyzed N-H insertion and a series of late stage transformations designed around the reactivity of the labile bicyclo[3.2.1]urea at the core of the target.     

Identification of the hydrogen utilization pathway for the electrocatalytic hydrogenation of phenol

Electrochemical hydrogenation(ECH) of biomass-derived platform molecules is a burgeoning route for the sustainable utilization of hydrogen. However, the noble-metal-catalyzed ECH of phenolic compounds suffers from intense competition with hydrogen evolution reaction. We prepared Pt Rh bimetallic nanoparticles dispersed on highly ordered mesoporous carbon nanospheres, which improves the utilization efficiency of adsorbed hydrogen(Had) to ECH in H–UPD region(0 V vs. RHE).Further analysis reveals(i) the strong overlapping between the d-orbitals of Pt and Rh enhances specific adsorption of phenol;(ii)incorporation of Rh devotes an electronic effect on weakening the alloy–Hadinteraction to increase the FE of ECH. DFT calculations confirm the selectivity difference and the ECH parallel pathways: cyclohexanol and cyclohexanone are formed via hydrogenation/dehydrogenation of the intermediate *C6 H10 OH. These findings deepen our fundamental understanding of the ECH process, and cast new light on exploration of highly efficient electrocatalysts for biomass upgrading.     

Synthesis and Optoelectronic Properties of Donor-acceptor Molecules Containing Pyromellitic Diimide Chromophore

Three donor-acceptor molecules containing pyromellitic diimide chromophore were designed and synthe- sized. The synthetic route towards the target compounds was systematically investigated and discussed in detail. The resulted organic semiconductors have shown promising optoelectronic properties as further revealed by UV-Vis ab- sorption spectroscopy, cyclic voltammetry, and theoretic calculation.     

基于香港高中化学学科校本评核的教、学、评活动设计*

化学实验评价对于培养学生的创新意识和化学学科实践能力具有重要意义,尝试借鉴香港高中化学学科校本评核方法设计“教、学、评”活动促进学生化学学习和实验能力发展。介绍了香港高中化学学科校本评核框架及准则,以人教版《化学1》(2003年课标本)“铁盐和亚铁盐”为例,结合2017年课标设计实验评价量表,通过实验活动串联教学任务,以期实现教、学、评目标。通过评价反馈,促使更加科学、全面地评估学生的实验能力表现,为教师的化学教学实践提供改进依据。     

Nano Trek Beyond: Driving Nanocars/Molecular Machines at Interfaces

In 2016, the Nobel Prize in Chemistry was awarded for pioneering work on molecular machines. Half a year later, in Toulouse, the first molecular car race, a “nanocar race”, was held by using the tip of a scanning tunneling microscope as an electrical remote control. In this Focus Review, we discuss the current state‐of‐the‐art in research on molecular machines at interfaces. In the first section, we briefly explain the science behind the nanocar race, followed by a selection of recent examples of controlling molecules on surfaces. Finally, motion synchronization and the functions of molecular machines at liquid interfaces are discussed. This new concept of molecular tuning at interfaces is also introduced as a method for the continuous modification and optimization of molecular structure for target functions.     

Mechanisms involved in the cell cycle and apoptosis of HT-29 cells pre-treated with MK-886 prior to photodynamic therapy with hypericin

In our previous study we have proved that colon cancer cells HT-29 pre-treated with specific 5-lipoxygenase inhibitor MK-886 became more susceptible to photodynamic therapy (PDT) with hypericin and we also found that this mutual combination induced cell cycle arrest and stimulated onset of apoptosis (Kleban et al., 2007. J. Photochem. Photobiol. B 84, 2). To further explain events associated with MK-886 mediated sensitization of tumor cells toward PDT with hypericin, more detailed study of signaling pathways leading to increase in apoptosis as well as cell cycle perturbations was performed and is presented herein. Intensive accumulation of HT-29 cells in G0/G1 phase of cell cycle led to expression analyses of several G0/G1 checkpoint molecules (cyclin A, cyclin E, cdk-2, pRb). Similarly, accumulation of apoptotic cells invoked analyses of key molecules involved in apoptotic signaling (caspase-3, -8, -9; PARP; Lamin B; Mcl-1; Bax) by Western blotting and caspase activity assay. Long term survival of cells was examined by clonogenicity test. As the effect of PDT is mediated by ROS production, levels of hydrogen peroxides and superoxide anion were monitored by flow cytometric analyses. In addition, an impact of MK-886 on LTB4 production and expression of 5-LOX was monitored. Massive G0/G1 arrest in the cell cycle accompanied by increase in cyclin E level and decrease/absention of cyclin A, cdk-2 and pRb expression indicated incapability for G1/S transition. Minimal changes in cleavage of procaspases observed in cells treated with non-toxic concentrations of either agent alone or their mutual combination were not quite in line with their activity (caspase-3, -8, -9) which was significantly increased mainly in combinations. Treatment with non-toxic concentration of MK-886 had minimal influence over ROS production compared to control cells. In contrast, hypericin alone markedly increased the level of ROS, but no additional effect of MK-886 pre-treatment was detected. Further analyses of particular ROS groups unveiled an impact of increasing MK-886 concentration on superoxide accumulation accompanied with depletion of hydrogen peroxide level within the cells. The clonogenicity test revealed disruption of colony formation after mutual combination of both agents as compared to MK-886 or PDT alone. In conclusion, we presume that stimulation of apoptosis in our experimental model was accomplished preferentially through the mitochondrial pathway, although caspase-8 activation was also noticed. Interestingly, pre-treatment with MK-886 modulated distribution of ROS production in mutual combination with PDT.     

Design of C-H-N-O based new hetero-cyclic high energy density molecules: a theoretical survey

Structural Chemistry - Theoretical study of C-H-N-O based new high energy density molecules is modeled with well-known FOX-7 (1, 1 - dinitro 2, 2 - diamino ethylene) moiety. We have designed some...     

An efficient method for the synthesis of 2-thiazoleacetic acid N-sulfonyl amidines

Chemistry of Heterocyclic Compounds - A three-step method was designed and developed on the basis of retrosynthetic analysis for the synthesis of hybrid molecules containing a thiazole ring and an...     

RASA: a rapid retrosynthesis-based scoring method for the assessment of synthetic accessibility of drug-like molecules

In this account, a rapid retrosynthesis-based scoring method for the assessment of synthetic accessibility of drug-like molecules, called RASA (Retrosynthesis-based Assessment of Synthetic Accessibility) is devised. RASA first constructs a synthesis tree for the target molecule based on retrosynthetic analysis; in this process a series of strategies are suggested for limiting combinatorial explosion of the synthesis tree. A scoring function (RASA-score) for the assessment of synthetic accessibility is then proposed based on the optional effective synthetic routes, the complexity of reaction, and the difficulty of separation/purification associated with the most favorable synthetic route. The contributions of individual components are calibrated by linear regression analysis based on the synthetic accessibility estimates of a training set (100 compounds) given by a group of medicinal chemists (G1). Two external test sets (TS1 and TS2), whose synthetic accessibility estimates were given by the group G1 medicinal chemists and another group (G2) of medicinal chemists (from literature), respectively, were adopted for the evaluation of RASA. The correlation coefficient between the calculated RASA-score values and the estimated scores by medicinal chemists for TS1 is 0.807 and that for TS2 is 0.792, which demonstrate the validity and reliability of RASA. The validity and reliability as well as the high speed of RASA and its capability of suggesting synthetic routes enable it a useful tool in drug discovery.     

Structure and dynamics of the Zr(4+) ion in water

The four-times positively charged zirconium ion in aqueous solution was simulated, using an ab initio quantum mechanical charge field molecular dynamics approach. As no hydrolysis reaction occurred during the simulation time of 10 ps, the target of this study was the evaluation of the structure and dynamics of the monomeric hydrated zirconium(iv) ion. The ion forms three hydration shells. In the first hydration shell the ion is 8-fold coordinated with a maximum probability of the Zr-O distance at 2.25 ?. While no exchanges occurred between the first and second shell, the mean residence time of the water molecules in the second shell is 5.5 ps. A geometry of the first hydration shell in-between a bi-capped trigonal prism and a square antiprism was found and a Zr-O force constant of 188 N m(-1) was evaluated.     

Erbium-Activated Silica-Titania Planar Waveguides

(100 – x)SiO₂-(x)TiO₂-ErO_3/2 planar waveguides, with 7 x 20 have been prepared by sol-gel route using the dip-coating technique. The thickness of the films was optimized to support a single propagating mode at 1550 nm, with a confinement coefficient higher than 0.75. The process of densification of the gel and the devitrification with the growth of TiO₂ nanocrystals were studied by Raman scattering. Devitrification is important only for x 15, but it was not possible to obtain full densification of the samples, even at the lowest TiO₂ content, without the appearance of nanocrystals.Emission in the C telecom band was observed; the spectral width of the ⁴I_13/2 ⁴I_15/2 transition of Er³⁺ slightly increases with the titania content. For x 12 most of Er³⁺ ions (about 65%) decay exponentially with a lifetime of about 8 ms.     

A new procedure for the synthesis of 2-[(4-dodecyloxyphenyl)sulfonyl]butanoic acid

A new, practical and cost-effective route for scalable synthesis of 2-[(4-dodecyloxyphenyl)sulfonyl] butanoic acid, a key intermediate of a new cyan dye-forming coupler containing a sulfone group, was developed by adopting phenol as the starting material. The synthesis was accomplished in five steps with etherification, chlorosulfonation, reduction, nucleophilic reaction by C-S coupling and hydrolyzation. An important objective of the new synthetic route was the synthesis of 2-[4-(dodecyloxyphenyl)sulfonyl]butanoate. Overall yield obtained at optimized conditions increased to 66 %. The synthetic strategy was proven to be a process enabling rapid delivery of the target product with high purity.     

A method for creating a non-equilibrium NT(P1-P2) ensemble in molecular dynamics simulation

A method is proposed for creating a non-equilibrium ensemble with a constant number of molecules, constant temperature and constant pressures with different target values in two reservoirs [referred to as NT(P(1)-P(2)) ensemble] that are connected by a finite length nanopore. This method includes two steps. The first step places a partition between the two reservoirs and then creates a static pressure field and a proper system volume by using two self-adjusting plates on which two external forces/pressures with different target values are exerted. The second step removes the partition and the two self-adjusting plates and the pressure difference between the two reservoirs is maintained by a "pump" designed to simultaneously create a periodic boundary condition between the two reservoirs and supply the necessary force (work) to a subset of molecules for a steady state flow. To examine this method, several cases using liquid argon with a truncated and shift Lennard-Jones potential under different target pressures and pump sizes were studied. Results show that the method proposed in this paper works well. In addition, the method proposed in this paper was compared with the other external force field methods. The results show that as long as the external force is applied to a restricted set of molecules away from the channel a constant pressure difference between two reservoirs is maintained. The advantage of the algorithm proposed here also sets the absolute pressures with different target levels in two reservoirs instead of it being arbitrary. Studies show that the fluid flow rate or permeability through a nanopore depends not only on the pressure difference between two reservoirs, but also on the absolute pressures in two reservoirs.     

An improved,regioselective synthesis of the radiolabelling precursor for the translocator protein targeting positron emission tomography imaging radiotracer [F]GE-180

[¹⁸F]GE-180 has been demonstrated to be a promising new positron emission tomography radiotracer for targeting translocator protein. PET imaging of TSPO will enable measurement of neuroinflammation and microglia activity in vivo. The synthetic route used in the initial discovery of GE-180, whilst enabling the rapid evaluation of the structure–activity relationships (SAR) in this molecular class, was not high yielding and not suitable for scale-up. Here we present an optimised route towards GE-180 and the radiolabelling precursor of [¹⁸F]GE-180 with significantly improved yields due to a strategy which improves the regioselectivity of the key indole formation step of the synthesis.     

Impact of end-capped engineering on the optoelectronic characteristics of pyrene-based non-fullerene acceptors for organic photovoltaics

Pyrene-based molecules are being explored as prospective fullerene-free acceptors for organic solar cells (OSCs), due to their easy accessibility, structural planarity, and excellent electron delocalization. In this work, we successfully designed and analyzed pyrene-based acceptor materials (QL1–QL8) to investigate their photophysical and electro-optical parameters. Various geometric parameters were computed at the MPW1PW91/6-31G(d,p). Advanced quantum chemical approaches were employed to characterize the molecules. All the tailored molecules (QL1–QL8) exhibit a lower bandgap than the reference (R), signifying their superiority. Among these, QL8 was found to have a maximum absorption (λ_max) at 791.37 nm and an optical bandgap (E_LUMO − E_HOMO) minimum of 2.11 eV. Redshifted absorption spectra are observed in both gaseous and solvent phases for all the designed (QL1–QL8) molecules in contrast to R. Among these, QL4 exhibits the highest light harvesting efficiency (0.9826), and open-circuit voltage. A detailed donor–acceptor investigation of QL8/PBDB-T revealed the marvelous charge switching at the donor–acceptor interface. The approach used in this study is anticipated to facilitate the manufacturing of highly efficient OSC molecules.     

Alkyl-functionalized organic dyes for efficient molecular photovoltaics

We designed and synthesized new alkyl-functionalized organic dyes, MK-1 and MK-2, for dye-sensitized solar cells (DSSCs). Based on the MK-2 dye, a high performance of efficiency (eta, 7.7%; short-circuit current density Jsc = 14.0 mA cm-2, open-circuit voltage Voc = 0.74 V, and fill factor FF = 0.74) was achieved under AM 1.5 G irradiation (100 mW cm-2). Remarkably, the relatively higher Voc for DSSCs based on MK-1 and MK-2 dyes, which have long alkyl chains, were observed among the organic dyes caused by the increasing of the electron lifetime in the conduction band of TiO2. Our molecular design of alkyl-functionalized dyes strongly suggests the promising performance of molecular photovoltaics based on organic dyes.     

Enantiomer ratio of MK-0767 in humans and nonclinical species

MK-0767, (+/-)-5-[(2,4-dioxothiazolidin-5-yl)methyl]-2-methoxy-N-[[(4-trifluoromethyl)phenyl]methyl]benzamide, is a thiazolidinedione-containing dual peroxisome proliferator-activated receptor (PPAR) alpha/gamma agonist that has been studied as a potential treatment for patients with type 2 diabetes. MK-0767 contains a chiral center at the C-5 position of the thiazolidinedione ring and was being developed as the racemate, due to the rapid interconversion of its enantiomers in biological samples. In the present work the in vitro and in vivo concentration ratios of the (+)-(R) to (-)-(S) enantiomers of MK-0767 were determined in plasma from humans (in vitro only) and nonclinical species used in the toxicological evaluation of rac-MK-0767, namely CD-1 mice, Sprague-Dawley rats, beagle dogs, New Zealand white rabbits, and rhesus monkeys. The R/S ratio was determined by chiral liquid chromatography/tandem mass spectrometry. Species differences were observed in the in vitro and in vivo enantiomeric ratios, as well as differences between in vitro and in vivo in some species. The in vitro R/S ratio was similar in dogs and humans (approximately 1.5-1.7). In rats and monkeys, the ratio was approximately unity, both in vitro and in vivo. In mice, the ratio was higher in vitro (approximately 1) than in vivo (approximately 0.6), while in rabbits it was higher in vivo (approximately 1) than in vitro (approximately 0.5). These results suggested that differential binding of the MK-0767 enantiomers to plasma and tissue proteins and other macromolecules may be affecting the R/S ratio both in vitro and in vivo, since in protein-free systems MK-0767 exists as the racemate.     

Design, chemical synthesis, and biological evaluation of novel triazolyl analogues of taranabant (MK-0364), a cannabinoid-1 receptor inverse agonist

Being obese has various health problems that are related to type 2 diabetes mellitus, cardiovascular disease, hypertension, hyperlipidemia, and fibrinolytic abnormalities. Merck's taranabant (MK-0364), a CB1R inverse agonist, is currently in Phase 3 clinical trials, and is being actively pursued by Merck toward obesity market. Merck intends to file for FDA approval of taranabant in 2008. In order to increase solubility and potency of taranabant, or even possibly improve safety, novel triazole analogues of taranabant have been designed and synthesized. We introduced a pivotal asymmetric center via the Evans chiral auxiliary methodology and set up 1,2,4-triazole via substitution of α-bromoketone. Subsequently, diastereoselective reduction was accomplished to install adjacent essential asymmetric center. This method allowed us to prepare readily sub-gram scale of the target compounds in a convenient way. The synthesized analogues were subjected to biological evaluation involving cannabinoid CB1 receptor binding affinity. While the parent taranabant bears highly potent binding affinity to cannabinoid CB1 receptor, neither of the analog structures improved CB1 receptor binding affinities.     

Synthesis and NMR structure of p41icf,a potent inhibitor of human cathepsin L

The total synthesis and structural characterization of the MHCII-associated p41 invariant chain fragment (P41icf) is described. P41icf plays a crucial role in the maturation of MHC class II molecules and antigen processing, acting as a highly selective cathepsin L inhibitor. P41icf synthesis was achieved using a combined solid-phase/solution approach. The entire molecule (65 residues, 7246 Da unprotected) was assembled in solution from fully protected peptides in the size range of 10 residues. After deprotection, oxidative folding in carefully adjusted experimental conditions led to the completely folded and functional P41icf with a disulfide pairing identical to that of native P41icf. CD, NMR, and surface plasmon resonance (SPR) were used for the structural and functional characterization of synthetic P41icf. CD thermal denaturation showed clear cooperative behavior. Tight cathepsin L binding was demonstrated by SPR. (1)H NMR spectroscopy at 800 MHz of unlabeled P41icf was used to solve the three-dimensional structure of the molecule. P41icf behaves as a well-folded protein domain with a topology very close to the crystallographic cathepsin L-bound form.