A Prebiotic Synthesis of Pterins

The genesis of life on Earth is a hypothesis of evolutionary science that can be, at least partially, tested experimentally. The prebiotic synthesis of cofactors or coenzymes is a poorly explored issue, likely because their formation under plausible prebiotic conditions is not clear. In this sense, it has been proposed that the cofactors are “molecular fossils” of an early phase of life. In contrast, Eschenmoser and Loewenthal suggested a prebiotic hydrocyanic origin of cofactor building blocks. In the present paper, the formation of a set of pterins from cyanide polymerizations is demonstrated, showing that the main structure of some cofactors can be prebiotically formed. Indeed, it was observed that aqueous aerosols additionally increase the relative composition for pterins in the insoluble NH₄CN polymers synthesized. The novel identification of pterins in NH₄CN polymers, together with the previous detection of other important biomonomers, indicates that cyanide polymerizations were essential in the early state of prebiotic chemistry.     

“intelligent” polymers in medicine and biotechnology

One can define “intelligent” polymers as those polymers which respond with large property changes to small physical or chemical stimuli. These polymers may be in various forms, such as in solution, on surfaces, or as solids. One may also combine “intelligent” aqueous polymer systems with biomolecules, to yield a large family of polymers which respond “intelligently” to physical, chemical or biological stimuli. This article overviews such interesting and versatile polymer systems.     

Synthesis,purification, and characterization of “perfect” star polymers via “Click” coupling

The copper (I)‐catalyzed azide‐alkyne cycloaddition “click” reaction was successfully applied to prepare well‐defined 3, 6, and 12‐arms polystyrene and polyethylene glycol stars. This study focused particularly on making “perfect” star polymers with an exact number of arms, as well as developing techniques for their purification. Various methods of characterization confirmed the star polymers high purity, and the structural uniformity of the generated star polymers. In particular, matrix‐assisted laser desorption ionization‐time‐of‐flight mass spectrometry revealed the quantitative transformation of the end groups on the linear polymer precursors and confirmed their quantitative coupling to the dendritic cores to yield star polymers with an exact number of arms. In addition to preparing well‐defined polystyrene and poly(ethylene glycol)homopolymer stars, this technique was also successfully applied to amphiphilic, PCL‐b‐PEG star polymers. © 2011 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem, 2012     

Statistical interpretation of the Amerithrax “morph” assay results

In the Amerithrax investigation PCR‐based “morph assays” were used to link the anthrax letters with the RMR‐1029 flask at USAMRIID. Quantitative data reported for several of these assays are not consistent with Poisson sampling statistics, but instead exhibit “Taylor's Law” behavior where the variance greatly exceeds the mean. A plausible statistical model for this behavior can explain the large number of observed negative and “inconclusive” findings, and implies a high likelihood that a repository sample could contain a “morph” mutant at concentrations well above the nominal detection limit but nonetheless give a negative or inconclusive test result. A Bayesian framework relates the assay results to the probability that a sample actually contains all four morph mutants, even though it tested negative for at least one. The analysis implies that the observed false negative rate actually does not significantly weaken the conclusion that the morph assays correctly excluded all but the stocks derived from RMR‐1029 as possible sources of the letter powders, at least when the test results were unambiguous. These findings expand upon and resolve some of the issues cited in recent reviews, and indicate the importance of developing a rigorous statistical framework for interpreting “morph” assay data.     

Theoretical Contribution towards Understanding Specific Behaviour of “Simple” Protein‐film Reactions in Square‐wave Voltammetry

Surface reactions of uniformly adsorbed redox molecules at working electrode surface are seen as adequate models to studying chemical reactivity of many lipophilic enzymes. When considered under pulse voltammetric techniques, these systems show several uncommon features, whose origin is still not completely clear. The phenomena of “quasireverible maximum”, “splitting” of the net peak in square‐wave voltammetry, and the very steep descent of Faradaic currents of simple surface redox reactions exhibiting fast electron transfer are just some of the features that make these systems quite interesting for further elaborations. In this work, we present a set of theoretical calculations under conditions of square‐wave voltammetry in order try to explain some of aforementioned phenomena. The major goal of our work is to get insight to some voltammetric and chrono‐amperometric features of two considered surface reactions, i. e. (1) the “simple” surface redox reaction, and (2) surface redox reaction coupled to follow‐up irreversible chemical reaction of electrochemically generated redox species (or surface ECirr). We focus on the role of created Red(ads) (here in the reduction pulses only) to the current components of calculated square‐wave voltammograms exhibiting fast electrode reaction. We show that the irreversible chemical removal of electrochemically generated Red(ads) species, created in the potential pulses where half‐reaction of reduction Ox(ads)+ne‐?→Red(ads) is “defined” to take place, causes significant increase of all square‐wave current components. The results presented in this work show how complex the chrono‐amperometric features of surface redox reactions under pulse voltammetric conditions might be. In addition, we point out that both half reactions of a given simple surface redox process can occur, at both, “only reduction” and “only oxidation” potential pulses in square‐wave voltammetry. This, in turn, contributes to the occurrence of many phenomena observed in simple protein‐film voltammetry reactions. The effects of chemical reaction rate to the features of calculated square‐wave voltammograms of surface ECirr systems with fast electrode reaction are reported for the first time in this work.     

Semi‐rigid polyesters analysed using the “strong‐fragile” concept

Semi‐rigid polyesters from diphenyl dicarbonic acid and some branched propyl and butyl spacers have been investigated using Differential Scanning Calorimetry. From Δc_p at Tg and the determination of the fragility index m, we studied the “strong‐fragile” behaviour of these materials. All the samples appear thermodynamically “strong” and “kinetically” fragile. A comparison of these results with those obtained from glass‐forming liquids leading to linear polymers ‐ such as PET, PCT, PEN or poly‐methyl (α‐n‐alkyl) acrylates ‐ shows that a modification of the polymer rigidity leads to change the fragility index m and the Δc_p at the glass transition.     

New chemically prepared conducting “pyrrole blacks”

A series of electrically conducting pyrrole “black” polymers has been prepared by chemical oxidation of pyrrole with a variety of ferric salts. The synthesis and properties of these materials are described and compared with electrochemically-prepared analogs. Pyrrole “blacks” with strong acid anion “dopants” exhibited the highest conductivities, up to 62 Ω cm^?1 for the triflate-doped polymer. The adjustability and ease of synthesis of the ferric-derived polypyrroles render these particularly promising for large-scale processing of conducting polymers.     

A New Route for the Prebiotic Synthesis of Nucleobases and Hydantoins in Water/Ice Solutions Involving the Photochemistry of Acetylene

The origin of nucleobases and other heterocycles is a classic question in the chemistry of the origins of life. The construction of laboratory models for the abiotic synthesis of nitrogen heterocycles in plausible natural conditions also aids the understanding and prediction of chemical species in the Solar System. Here, we report a new explanation for the origin of hydantoins, purines, and pyrimidines in eutectic water/ice/urea solutions driven by ultraviolet irradiation (in the 185–254 nm range, UVC) of acetylene under anoxic conditions. An analysis of the products indicates the synthesis of hydantoin and 5‐hydroxyhydantoin, the purines uric acid, xanthine, and guanine, and the pyrimidines uracil and cytosine. The synthesis occurred together with the photo‐oxidation of bases in a complex process for which possible pathways are proposed. In conclusion, an acetylene‐containing atmosphere could contribute to the origin of nucleobases in the presence of a urea/water system by an HCN‐independent mechanism. The presence of ice has a dual role as a favorable medium for the synthesis of nucleobases and protection against degradation and as a source of free radicals for the synthesis of highly oxidized heterocycles. A mechanism for the origin of hydantoins and uracil from urea in plausible conditions for prebiotic chemistry is also proposed.     

Synthesis of Novel Core Cross‐Linked Star‐Based Polyrotaxane End‐Capped via “CuAAC” Click Chemistry

The first example of core cross‐linked star (CCS) polyrotaxane was prepared using the poly(ϵ‐caprolactone) (PCL) CCS three‐dimensional (3D) scaffold. The 3D CCS polymer was firstly prepared through the “arm‐first” approach. Then, the “arms” of the resultant PCL CCS polymer were threaded with α‐cyclodextrins (α‐CDs). The threaded α‐CDs were permanently locked by the “click” reaction of terminal alkyne functionalities of the star polymers with the azide‐functionalized end caps to afford the CCS polyrotaxanes. All analytical results confirm the formation of the CCS polyrotaxanes and reveal their characteristics, including fluorescence under UV, a channel‐type crystalline structure, a two‐step thermal decomposition, and a unique core‐shell structure in great contrast to the polymer precursors.     

Multiarm star polymers with a thermally cleavable core: A “grafting‐from” approach paves the way

Thermally cleavable multiarm star polymers containing thermo‐reversible furan–maleimide cycloadduct‐based core were synthesized using dendritic macroinitiators. Peripheries of dendritic macroinitiators were modified with bromine containing free radical initiators to obtain multiarm polymers by utilizing atom transfer radical polymerization (ATRP). Cleavage of thus obtained multiarm polymers was achieved via the retro Diels–Alder cycloreversion reaction of the furan–maleimide core at elevated temperatures. As an alternative approach, combination of multiarm polymers containing a furan and maleimide functional group at their core was attempted to realize that the steric bulk does not allow their formation. Hence the “grafting‐from” route using a thermally fragmentable trigger containing multiarm initiators provides a plausible methodology for fabrication of such thermally cleavable multiarm polymeric materials. Syntheses of dendritic initiators, formation of star polymers as well as their fragmentation were followed by proton nuclear magnetic resonance spectroscopy and size exclusion chromatography. © 2016 Wiley Periodicals, Inc. J. Polym. Sci., Part A: Polym. Chem. 2017 , 55, 885–893     

“Design” of Boron‐Based Compounds as Pro‐Nucleophiles and Co‐Catalysts for Indium(I)‐Catalyzed Allyl Transfer to Various Csp3‐Type Electrophiles

We have recently uncovered a general indium(I)‐catalyzed method for allylations and propargylation of acetals and ketals with a water‐ and air‐stable allyl boronate. By using a more reactive allyl borane, we have successfully extended this methodology to the more challenging C C coupling with ethers. Herein, we report an improved methodology for the indium(I)‐catalyzed allylation of acetals and ethers, through combination of the allyl boronate with a commercially available “hard” Lewis acid, B‐methoxy‐9‐BBN (BBN=borabicyclo[3.3.1]nonane), as an effective co‐catalyst. Significantly, our work highlights for the first time the correlation between the Lewis acidity of “electrophilic” boron‐based compounds and their “nucleophilic” reactivity in Csp³–Csp³ couplings, catalyzed by a “soft” low‐oxidation main group metal. In addition, we also report several applications of these methodologies to the selective synthesis of various carbohydrate derivatives.     

Degradable star polymers with high “click” functionality

Degradable polyester‐based star polymers with a high level of functionality in the arms were synthesized via the “arms first” approach using an acetylene‐functional block copolymer macroinitiator. This was achieved by using 2‐hydroxyethyl 2′‐methyl‐2′‐bromopropionate to initiate the ring‐opening polymerization (ROP) of caprolactone monomer followed by an atom transfer radical polymerization (ATRP) of a protected acetylene monomer, (trimethylsilyl)propargyl methacrylate. The hydroxyl end‐group of the resulting block copolymer macroinitiator was subsequently crosslinked under ROP conditions using a bislactone monomer, 4,4′‐bioxepanyl‐7,7′‐dione, to generate a degradable core crosslinked star (CCS) polymer with protected acetylene groups in the corona. The trimethylsilyl‐protecting groups were removed to generate a CCS polymer with an average of 1850 pendent acetylene groups located in the outer block segment of the arms. The increased functionality of this CCS polymer was demonstrated by attaching azide‐functionalized linear polystyrene via a copper (I)‐catalyzed cycloaddition reaction between the azide and acetylene groups. This resulted in a CCS polymer with “brush‐like” arm structures, the grafted segment of which could be liberated via hydrolysis of the polyester star structure to generate molecular brushes. © 2009 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem 47: 1485–1498, 2009     

Synthesis of graft copolymers with “V‐shaped” and “Y‐shaped” side chains via controlled radical and anionic polymerizations

A combination of nitroxide‐mediated radical polymerization and living anionic polymerization was used to synthesize a series of well‐defined graft (co)polymers with “V‐shaped” and “Y‐shaped” branches. The polymer main chain is a copolymer of styrene and p‐chloromethylstyrene (PS‐co‐PCMS) prepared via nitroxide‐mediated radical polymerization. The V‐shaped branches were prepared through coupling reaction of polystyrene macromonomer, carrying 1,1‐diphenylethylene terminus, with polystyryllithium or polyisoprenyllithium. The Y‐shaped branches were prepared throughfurther polymerization initiated by the V‐shaped anions. The obtained branches, carrying a living anion at the middle (V‐shaped) or at the end of the third segment (Y‐shaped), were coupled in situ with pendent benzyl chloride of PS‐co‐PCMS to form the target graft (co)polymers. The purified graft (co)polymers were analyzed by size exclusion chromatography equipped with a multiangle light scattering detector and a viscometer. The result shows that the viscosities and radii of gyration of the branched polymers are remarkably smaller than those of linear polystyrene. In addition, V‐shaped product adopts a more compact conformation in dilute solution than the Y‐shaped analogy. © 2007 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem 45: 4013–4025, 2007     

Synthesis of ω‐phosphonated poly(ethylene oxide)s through the combination of kabachnik–fields reaction and “click” chemistry

The synthesis of new ω‐phosphonic acid‐terminated poly(ethylene oxide) (PEOs) monomethyl ethers was investigated by the combination of Atherton–Todd or Kabachnik–Fields reactions and the “click” copper‐catalyzed 1,3‐dipolar cycloaddition of azides and terminal alkynes. The Atherton–Todd route fails to give the corresponding phosphonic acid‐terminated PEOs due to competitive cleavage of the P? N bond during the dealkylation step. In contrast, the Kabachnik–Fields route leads with very good yields to ω‐phosphonic acid‐PEO through “click” reaction of azido‐PEO onto dimethyl aminopropargyl phosphonate prepared by Kabachnik–Fields reaction between propargylbenzylimine and dimethyl phosphonate, followed by acidic hydrolysis. The reported methodology, precluding the use of anionic polymerization of ethylene oxide, leads to novel well‐defined phosphonic acid‐terminated PEOs from commercially available products in good yields. Moreover, such a strategy can be adapted to anchor phosphonic acid functionality onto a wide range of polymers. © 2012 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem, 2013     

Efficient synthesis of monodisperse,highly crosslinked,and “living” functional polymer microspheres by the ambient temperature iniferter‐induced “living” radical precipitation polymerization

The facile and efficient one‐pot synthesis of monodisperse, highly crosslinked, and “living” functional copolymer microspheres by the ambient temperature iniferter‐induced “living” radical precipitation polymerization (ILRPP) is described for the first time. The simple introduction of iniferter‐induced “living” radical polymerization (ILRP) mechanism into precipitation polymerization system, together with the use of ethanol solvent, allows the direct generation of such uniform functional copolymer microspheres. The polymerization parameters (including monomer loading, iniferter concentration, molar ratio of crosslinker to monovinyl comonomer, and polymerization time and scale) showed much influence on the morphologies of the resulting copolymer microspheres, thus permitting the convenient tailoring of the particle sizes by easily tuning the reaction conditions. In particular, monodisperse poly(4‐vinylpyridine‐co‐ethylene glycol dimethacrylate) microspheres were prepared by the ambient temperature ILRPP even at a high monomer loading of 18 vol %. The general applicability of the ambient temperature ILRPP was confirmed by the preparation of uniform copolymer microspheres with incorporated glycidyl methacrylate. Moreover, the “livingness” of the resulting polymer microspheres was verified by their direct grafting of hydrophilic polymer brushes via surface‐initiated ILRP. Furthermore, a “grafting from” particle growth mechanism was proposed for ILRPP, which is considerably different from the “grafting to” particle growth mechanism in the traditional precipitation polymerization. © 2013 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem, 2013     

“On‐Droplet” Chemistry: The Cycloaddition of Diethyl Azodicarboxylate and Quadricyclane

Sharpless and co‐workers previously studied the [2σ+2σ+2π] cycloaddition of diethyl azodicarboxylate (DEAD) and quadricyclane and reported that the addition of water to the neat reagents caused an acceleration in the reaction rate, giving birth to what has been called “on‐water” chemistry. We have examined the same reaction in aqueous microdroplets (ca. 5 μm diameter) and find that the cycloaddition reaction is accelerated even further (by a factor of 10²) compared to that of the “on‐water” reaction reported previously. The trends of acceleration in solvents other than water demonstrated by Sharpless and colleagues were replicated in the corresponding microdroplet experiments. We also find that DEAD reacts with itself to form a variety of hydrazine carboxylates and intercept intermediates of this reaction in microdroplets to validate a mechanism proposed herein. We suggest that “on‐droplet” chemistry, similar to “on‐water” chemistry, may be a general process of synthetic interest.     

The formation of “inverted” core-shell latexes

It has been found that when hydrophobic monomers are polymerized in the presence of highly hydrophilic polymer seed particles, the second-stage hydrophobic polymers form cores surrounded by the first-stage hydrophilic polymers, resulting in “inverted” core-shell latexes. The formation of core-shell morphology by this inversion process has been found to be dependent on the hydrophilicity and molecular weight of the first-stage hydrophilic polymers and the extent of phase separation between the two polymers involved. Particle morphology has been examined by electron microscopy, surface acid titration, alkali swelling of particles, and surface reactivity.     

A “Catch‐and‐Release” Protocol for Alkyne‐Tagged Molecules Based on a Resin‐Bound Cobalt Complex for Peptide Enrichment in Aqueous Media

The development of new and mild protocols for the specific enrichment of biomolecules is of significant interest from the perspective of chemical biology. A cobalt–phosphine complex immobilised on a solid‐phase resin has been found to selectively bind to a propargyl carbamate tag, that is, “catch”, under dilute aqueous conditions (pH 7) at 4 °C. Upon acidic treatment of the resulting resin‐bound alkyne–cobalt complex, the Nicholas reaction was induced to “release” the alkyne‐tagged molecule from the resin as a free amine. Model studies revealed that selective enrichment of the alkyne‐tagged molecule could be achieved with high efficiency at 4 °C. The proof‐of‐concept was applied to an alkyne‐tagged amino acid and dipeptide. Studies using an alkyne‐tagged dipeptide proved that this protocol is compatible with various amino acids bearing a range of functionalities in the side‐chain. In addition, selective enrichment and detection of an amine derived from the “catch and release” of an alkyne‐tagged dipeptide in the presence of various peptides has been accomplished under highly dilute conditions, as determined by mass spectrometry.     

Cyclic alkoxyamine‐initiator tethered by azide/alkyne‐“click”‐chemistry enabling ring‐expansion vinyl polymerization providing macrocyclic polymers

A cyclic initiator for the nitroxide‐mediated controlled radical polymerization (NMP) is a powerful tool for the preparation of macrocyclic polymers via a ring‐expansion vinyl polymerization mechanism. For this purpose, we prepared a Hawker‐type NMP‐initiator that includes an azide and a terminal alkyne as an acyclic precursor, which is subsequently tethered via an intramolecular azide/alkyne‐“click”‐reaction, producing the final cyclic NMP‐initiator. The polymerization reactions of styrene with cyclic initiator were demonstrated and the resultant polymers were characterized by the gel permeation chromatography (GPC) and the matrix‐assisted laser desorption/ionization time‐of‐flight mass spectrometry (MALDI‐TOF MS). These results prove that the ring‐expansion polymerization of styrene occurred together with the radical ring‐crossover reactions originating from the exchange of the inherent nitroxides generating macrocyclic polystyrenes with higher expanded rings. © 2010 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem 48: 3402–3416, 2010     

Ionic Diode Characteristics at a Polymer of Intrinsic Microporosity (PIM) | Nafion “Heterojunction” Deposit on a Microhole Poly(ethylene‐terephthalate) Substrate

Ionic diode phenomena occur at asymmetric ionomer | aqueous electrolyte microhole interfaces. Depending on the applied potential, either an “open” or a “closed” diode state is observed switching between a high ion flow rate and a low ion flow rate. Physically, the “open” state is associated mainly with conductivity towards the microhole within the ionomer layer and the “closed” state is dominated by restricted diffusion‐migration access to the microhole interface opposite to the ionomer. In this report we explore a “heterojunction” based on an asymmetric polymer of intrinsic microporosity (PIM) | Nafion ionomer microhole interface. Improved diode characteristics and current rectification are observed in aqueous NaCl. The effects of creating the PIM | Nafion micro‐interface are investigated and suggested to lead to novel sensor architectures.