功能化核酸适体的筛选及分子识别应用

核酸适体是从寡核苷酸文库中筛选获得的一段单链寡核苷酸. 由于能与多种靶标分子高特异性结合, 核酸适体已发展成为一种新兴的分子识别工具, 广泛应用于生物医学等领域. 天然核酸文库有限的化学组成限制了核酸适体的结构和功能, 进而限制了其在分子识别中的应用. 功能化核酸适体通过引入特定的化学官能团使核酸序列具有更丰富的构象和功能, 增强其分子识别能力. 然而, 功能化核酸很难与核酸扩增方法兼容, 因而难以使用传统筛选方法进行功能化核酸的筛选. 因此, 优化筛选方法对于获得具有优异性能的功能化核酸适体至关重要. 本综述总结了功能化核酸适体的筛选方法, 并介绍了其作为分子识别工具在生物医学领域中的应用.     

Regulation of Protein Activity and Cellular Functions Mediated by Molecularly Evolved Nucleic Acids

Regulation of protein activity is essential for revealing the molecular mechanisms of biological processes. DNA and RNA achieve many uniquely efficient functions, such as genetic expression and regulation. The chemical capability to synthesize artificial nucleotides can expand the chemical space of nucleic acid libraries and further increase the functional diversity of nucleic acids. Herein, a versatile method has been developed for modular expansion of the chemical space of nucleic acid libraries, thus enabling the generation of aptamers able to regulate protein activity. Specifically, an aptamer that targets integrin alpha3 was identified and this aptamer can inhibit cell adhesion and migration. Overall, this chemical‐design‐assisted in vitro selection approach enables the generation of functional nucleic acids for elucidating the molecular basis of biological activities and uncovering a novel basis for the rational design of new protein‐inhibitor pharmaceuticals.     

Synthesis of Functional Polymers by Post‐Polymerization Modification

Post‐polymerization modification is based on the direct polymerization or copolymerization of monomers bearing chemoselective handles that are inert towards the polymerization conditions but can be quantitatively converted in a subsequent step into a broad range of other functional groups. The success of this method is based on the excellent conversions achievable under mild conditions, the excellent functional‐group tolerance, and the orthogonality of the post‐polymerization modification reactions. This Review surveys different classes of reactive polymer precursors bearing chemoselective handles and discusses issues related to the preparation of these reactive polymers by direct polymerization of appropriately functionalized monomers as well as the post‐polymerization modification of these precursors into functional polymers.     

Standing on the shoulders of Hermann Staudinger: Post‐polymerization modification from past to present

With a span as long as the history of polymer science itself, post‐polymerization modification represents a versatile platform for the preparation of diversely functionalized polymers from a single precursor. Starting with the initial efforts by Staudinger in the 1920s, many of the early developments in modern polymer science can be attributed to the utilization of post‐polymerization modification reactions. The scope of post‐polymerization modification has greatly expanded since the 1990s due to the development of functional group tolerant controlled/living polymerization techniques combined with the (re)discovery of highly efficient coupling chemistries that allow quantitative, chemoselective, and orthogonal functionalization of reactive polymer precursors. After some basic mechanistic considerations, this Highlight will provide an overview of the development and evolution of eight main classes of post‐polymerization modification reactions. © 2012 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem, 2013     

Core–Shell Structured Chitosan-Polyethylenimine Nanoparticles for Gene Delivery: Improved Stability,Cellular Uptake,and Transfection Efficiency

The delivery of nucleic acids relies on vectors that condense and encapsulate their cargo. Especially nonviral gene delivery systems are of increasing interest. However, low transgene expression levels and limited tolerability of these systems remain a challenge. The improvement of nucleic acid delivery using depolymerized chitosan–polyethylenimine DNA complexes (dCS-PEI/DNA) is investigated. The secore complexes are further combined with chitosan-based shells and functionalized with polyethylene glycol (PEG) and cell penetrating peptides. This modular approach allows to evaluate the effect of functional shell components on physicochemical particle characteristics and biological effects. The optimized ternary complex combines a core-dCS-linear PEI/DNA complex with a shell consisting of dCS-PEG-COOH, which results in improved nucleic acid encapsulation, cellular uptake and transfection potency in human hepatoma HuH-7cells and murine primary hepatocytes. Effects on transgene expression are confirmed in wild-type mice following retrograde intrabiliary infusion. After administration of only 100 ng complexed DNA, ternary complexes induced a high reporter gene signal for three days. It is concluded that ternary coreshell structured nanoparticles comprising functionalized chitosan can be used for in vitro andin vivo gene delivery.     

Synthesis of aromatic oxazolyl‐ and carboxyl‐functionalized polymers: Atom transfer radical polymerization of styrene initiated by 2‐[(4‐bromomethyl)phenyl]‐4,5‐dihydro‐4,4‐dimethyloxazole

The synthesis of a new compound, 2‐[(4‐bromomethyl)phenyl]‐4,5‐dihydro‐4,4‐dimethyloxazole ( 1 ), and its utility in the synthesis of oxazoline‐functionalized polystyrene by atom transfer radical polymerization (ATRP) methods are described. Aromatic oxazolyl‐functionalized polymers were prepared by the ATRP of styrene, initiated by ( 1 ) in the presence of copper(I) bromide/2,2′‐bipyridyl catalyst system, to afford the corresponding α‐oxazolyl‐functionalized polystyrene ( 2 ). The polymerization proceeded via a controlled free radical polymerization process to produce the corresponding α‐oxazolyl‐functionalized polymers with predictable number‐average molecular weights, narrow molecular weight distributions in high‐initiator efficiency reactions. Post‐ATRP chain end modification of α‐oxazolyl‐functionalized polystyrene ( 2 ) to form the corresponding α‐carboxyl‐functionalized polystyrene ( 3 ) was achieved by successive acid‐catalyzed hydrolysis and saponification reactions. The polymerization processes were monitored by gas chromatography analyses. The unimolecular‐functionalized initiator and functionalized polymers were characterized by thin layer chromatography, spectroscopy, size exclusion chromatography, and nonaqueous titration analysis. © 2011 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem, 2011.     

Biotin functionalized poly(sulfonic acid)s for bioconjugation: In situ binding monitoring by QCM‐D

We describe the synthesis of biotin end functionalized poly(sulfonic acid)s via living radical polymerization (LRP) for conjugation to Avidin. Quartz crystal microbalance (QCM‐D) and competitive binding studies were used to confirm this conjugation. A biotin initiator for copper‐mediated LRP was used to provide acrylamide and methacrylate based polymers with the functional end group. This investigation revealed that 2‐acrylamido‐2‐methyl‐1‐propanesulfonic acid was not a suitable monomer in its acid form but was successfully used in its sodium salt form. A second monomer, 3‐sulfopropylmethacrylate as the potassium salt was also studied and both monomers produced polymers with polydispersities <1.3 and 1.4, respectively. Evolution of molecular weight with respect to time indicated that the polymerization of the acrylamide polymer is controlled. Quartz crystal microbalance with dissipation monitoring was used to confirm that the biotinylated polymers were able to bind to Avidin in situ. The gold surface of a quartz crystal was chemically modified resulting in a stable monolayer of Avidin; the biotinylated polymers were passed over the functionalized surface and their grafting ability was examined. A competitive binding evaluation was undertaken with 2‐(4‐hydroxyphenylazo)benzoic acid (HABA) dye to provide visual verification of conjugation. © 2010 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem, 2011     

Functionalization of polymers prepared by ATRP using radical addition reactions

Low molecular weight linear poly(methyl acrylate), star and hyperbranched polymers were synthesized using atom transfer radical polymerization (ATRP) and end‐functionalized using radical addition reactions. By adding allyltri‐n‐butylstannane at the end of the polymerization of poly(methyl acrylate), the polymer was terminated by allyl groups. When at high conversions of the acrylate monomer, allyl alcohol or 1,2‐epoxy‐5‐hexene, monomers which are not polymerizable by ATRP, were added, alcohol and epoxy functionalities respectively were incorporated at the polymer chain end. Functionalization by radical addition reactions was demonstrated to be applicable to multi‐functional polymers such as hyperbranched and star polymers.     

Synthesis of well‐defined functionalized polymers and star branched polymers by means of living anionic polymerization using specially designed 1,1‐diphenylethylene derivatives

This article covers precise syntheses of well‐defined chain‐end and in‐chain functionalized polymers, multi‐functionalized polymers with a definite number of functional groups, star‐branched and graft polymers by recently developed methodologies using specially designed 1,1‐diphenylethylene (DPE) derivatives. The DPE derivatives include various substituted DPE derivatives with functional groups and their derivatives, DPE‐functionalized DPE derivatives, and well‐defined DPE‐functionalized macromonomers. The synthetic utility and importance of these DPE derivatives are described via such polymer syntheses.     

Hetero and homo α,ω-chain-end functionalized polyphosphazenes

The control of chain-ends is fundamental in modern macromolecular chemistry for directed one-to-one bioconjugation and the synthesis of advanced architectures such as block copolymers or bottlebrush polymers and the preparation of advanced soft materials. Polyphosphazenes are of growing importance as elastomers, biodegradable materials and in biomedical drug delivery due to their synthetic versatility. While controlled polymerization methods have been known for some time, controlling both chain-ends with high fidelity has proven difficult. We demonstrate a robust synthetic route to hetero and homo α,ω-chain-end functionalized polyphosphazenes via end-capping with easily accessible, functionalized triphenylphosphine-based phosphoranimines. A versatile thiol-ene “click”-reaction approach then allows for subsequent conversion of the end-capped polymers with various functional groups. Finally, we demonstrate the utility of this system to prepare gels based on homo α,ω-chain-end functionalized polyphosphazenes. This development will enhance their progress in various applications, particularly in soft materials and as degradable polymers.     

Preparation of α,ω‐telechelic hexyl acrylate polymers with ?OH, ?COOH,and ?NH2 functional groups by RAFT

The design, synthesis, and use of two new, stable, functionalized chain transfer agents (CTA's) containing OH and amine end groups for the RAFT polymerization is reported: 2‐hydroxyethoxy‐carbonylphenylmethyl dithiobenzoate and 2‐(2‐(tert‐butoxycarbonyl)ethylamino)‐2‐oxo‐1‐phenylethyl benzodithioate, respectively. The RAFT polymerization of n‐hexyl acrylate (HA) using those CTA's, were compared to several other functionalized dithiobenzoate esters reported in the literature containing COOH and Ester groups. The performances of the dithiobenzoates were compared in terms of kinetics and molecular weight distribution control. Good control in polymerization of n‐hexyl acrylate with a linear increase of M_n with conversion mantaining polydispersity indices (PDI) below 1.1 was obtained by use of the new functionalized CTA's developed and also by use of some other CTA's tested, to produce well‐defined linear polymers with one specific chain‐end functionality: ? OH, ? COOH or Amine. Using a postpolymerization reaction with functionalized azocompounds in a 5 to 1 ratio, α,ω‐telechelic polymers, with ? OH or ? COOH as functional group at the second end were obtained. By using this synthetic strategy α,ω‐homotelechelic and heterotelechelic polymers were readily prepared. The chemical availability of functional end‐groups in the telechelics was demonstrated by reaction with methacrylic anhydride. © 2010 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem 48: 3033–3051, 2010     

Heterotelechelic Polymers by Ring‐Opening Metathesis and Regioselective Chain Transfer

Heterotelechelic polymers were synthesized by a kinetic telechelic ring‐opening metathesis polymerization method relying on the regioselective cross‐metathesis of the propagating Grubbs’ first‐generation catalyst with cinnamyl alcohol derivatives. This procedure allowed the synthesis of hetero‐bis‐end‐functional polymers in a one‐pot setup. The molecular weight of the polymers could be controlled by varying the ratio between cinnamyl alcohol derivatives and monomer. The end functional groups can be changed using different aromatically substituted cinnamyl alcohol derivatives. Different monomers were investigated and the presence of the functional groups was shown by NMR spectroscopy and MALDI‐ToF mass spectrometry. Labeling experiments with dyes were conducted to demonstrate the orthogonal addressability of both chain ends of the heterotelechelic polymers obtained.     

Rapid Capture and Release of Nucleic Acids through a Reversible Photo‐Cycloaddition Reaction in a Psoralen‐Functionalized Hydrogel

Reversible immobilization of DNA and RNA is of great interest to researchers who seek to manipulate DNA or RNA in applications such as microarrays, DNA hydrogels, and gene therapeutics. However, there is no existing system that can rapidly capture and release intact nucleic acids. To meet this unmet need, we developed a functional hydrogel for rapid DNA/RNA capture and release based on the reversible photo‐cycloaddition of psoralen and pyrimidines. The functional hydrogel can be easily fabricated through copolymerization of acrylamide with the synthesized allylated psoralen. The psoralen‐functionalized hydrogel exhibits effective capture and release of nucleic acids spanning a wide range of lengths in a rapid fashion; over 90 % of the capture process is completed within 1 min, and circa 100 % of the release process is completed within 2 min. We observe no deleterious effects on the hybridization to the captured targets.     

Synthesis of narrow‐polydispersity degradable dendronized aliphatic polyesters

The divergent dendronization of an ?‐caprolactone‐based polymer has been performed to provide access to dendronized polymers with sufficient biocompatibility and degradability for use as drug‐delivery scaffolds. The synthesis was performed through the tin(II) 2‐ethylhexanoate‐catalyzed polymerization of a γ‐functionalized ?‐caprolactone monomer, followed by the divergent growth of pendant polyester dendrons at each repeat unit. The resulting dendronized polymers were obtained up to the fourth generation with molecular weights as high as 80,000 Da and with polydispersities between 1.11 and 1.22. The fourth‐generation hydroxyl‐terminated dendronized polymer was degradable under a variety of aqueous conditions. A comparison of the dendronization approach with a procedure involving the ring‐opening polymerization of a second‐generation dendritic macromonomer reveals that the former procedure is best suited for the preparation of this family of dendronized polyesters because it requires shorter reaction times and affords materials with higher degrees of polymerization. © 2004 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem 42: 3563–3578, 2004     

Sequence‐Controlled Polymers with Furan‐Protected Maleimide as a Latent Monomer

Herein, a novel methodology for preparing sequence‐controlled polymers is illustrated by using a latent monomer, furan protected maleimide (FMI). At 110 °C, FMI is deprotected by retro Diels–Alder (rDA) reaction, and the released MI is immediately involved in the cross‐polymerization with styrene (St) to deliver heterosegments. At 40 °C the rDA reaction does not proceed, therefore homo‐poly(styrene) segments are produced. By implementing programmable temperature changes during polymerization of St and FMI, “living” polymers with tailored a sequence are created. A ternary copolymerization produces complex sequences as designed. Alkynyl‐functionalized FMI, used as a latent monomer, leads to the desirable placement of functional groups along the polymer chain. This latent‐monomer‐based strategy opens a new avenue for fabricating sequence‐controlled polymers.     

Modular In Situ Functionalization Strategy: Multicomponent Polymerization by Palladium/Norbornene Cooperative Catalysis

Herein, we report a cooperatively palladium/norbornene‐catalyzed polymerization, which simplifies the synthesis of functional aromatic polymers, including conjugated polymers. Specifically, an A₂B₂C‐type multicomponent polymerization that is based on an ortho amination/ipso alkynylation reaction was developed for the preparation of various amine‐functionalized arylacetylene‐containing polymers. Within a single catalytic cycle, the amine side chains are site‐selectively installed in situ by C?H activation during the polymerization process, which represents a major difference from conventional cross‐coupling polymerizations. This “in situ functionalization” strategy enables the modular incorporation of functional side chains starting from simple monomers, thereby conveniently affording a diverse range of functional polymers.     

Sieving polymer synthesis by reversible addition fragmentation chain transfer polymerization

Replaceable sieving polymers are the fundamental component for high‐resolution nucleic acids separation in CE. The choice of polymer and its physical properties play significant roles in influencing separation performance. Recently, reversible addition fragmentation chain transfer (RAFT) polymerization has been shown to be a versatile polymerization technique capable of yielding well‐defined polymers previously unattainable by conventional free‐radical polymerization. In this study, a high molecular weight poly‐(N,N‐dimethylacrylamide) (PDMA) at 765 000 gmol^?1 with a polydispersity index of 1.55 was successfully synthesized with the use of chain transfer agent—2‐propionic acidyl butyl trithiocarbonate in a multistep sequential RAFT polymerization approach. This study represents the first demonstration of RAFT polymerization for synthesizing polymers with the molecular weight range suitable for high‐resolution DNA separation in sieving electrophoresis. Adjustment of pH in the reaction was found to be crucial for the successful RAFT polymerization of high molecular weight polymer as the buffered condition minimizes the effect of hydrolysis and aminolysis commonly associated with trithiocarbonate chain transfer agents. The separation efficiency of 2‐propionic acidyl butyl trithiocarbonate PDMA was found to have marginally superior separation performance compared to a commercial PDMA formulation, POP?‐CAP, of similar molecular weight range.     

Synthesis of Multivalent Organotellurium Chain‐Transfer Agents by Post‐modification and Their Applications in Living Radical Polymerization

Functionalized or multivalent organotellurium chain‐transfer agents (CTAs) for living radical polymerization were synthesized by post‐modification, which involved the condensation between a carboxylic‐acid‐functionalized CTA and various amines in excellent yields without affecting the reactive tellurium moiety. The CTAs exhibited high synthetic versatility for radical polymerization and gave structurally well‐controlled polymers, such as multiarmed polymers, from various monomers. Because all new CTAs are easily available on a large scale by simple purification, the current method significantly facilitates macromolecular engineering based on organotellurium‐mediated radical polymerization (TERP).     

Controlled Positioning of Activated Ester Moieties on Well‐Defined Linear Polymer Chains

The successful sequence‐controlled installation of an activated ester using a newly designed monomer pentafluorophenyl 4‐maleimidobenzoate is demonstrated. Pentafluorophenyl 4‐maleimidobenzoate is kinetically installed at different stages of a nitroxide‐mediated polymerization, namely, near the α‐chain end and in the middle of a PS chain. In addition, successful installation of apolar and polar functional groups is achieved via post‐polymerization functionalization, which demonstrated the versatility of the synthesis of a universal precursor for locally functionalized polymers.     

A Novel DNA‐Enrichment Technology Based on Amino‐Modified Functionalized Silica Nanoparticles

Abstract

In this paper we report a novel DNA‐enrichment technology based on amino‐modified functionalized silica nanoparticles. The approach takes advantage of the amino‐modified silica nanoparticles that have been prepared in one step by the controlled synchronous hydrolysis of tetraethoxysilane and N‐(β‐amimoethyl)‐γ‐aminopropyltriethoxysilane in water nanodroplets of water‐in‐oil microemulsions. The functionalized silica nanoparticles display a positive surface charge at neutral pH due to the presence of amino groups on the surface of these nanoparticles. DNA‐enrichment has been realized in the form of nanoparticle–DNA complexes that is accomplished through electrostatic binding between the positive charge of the amino group and the negative charge of the phosphate groups of the nucleic acid. These nanoparticles have high affinity to bind DNA. The results show that 1 mg of nanoparticles can bind 97.2 µg of plasmid DNA with 4.3 kb. This novel DNA‐enrichment technology has been used successfully in gene delivery.