Putative One‐Pot Prebiotic Polypeptides with Ribonucleolytic Activity

KIA7, a peptide with a highly restricted set of amino acids (Lys, Ile, Ala, Gly and Tyr), adopts a specifically folded structure. Some amino acids, including Lys, Ile, Ala, Gly and His, form under the same putative prebiotic conditions, whereas different conditions are needed for producing Tyr, Phe and Trp. Herein, we report the 3D structure and conformational stability of the peptide KIA7H, which is composed of only Lys, Ile, Ala, Gly and His. When the imidazole group is neutral, this 20‐mer peptide adopts a four‐helix bundle with a specifically packed hydrophobic core. Therefore, one‐pot prebiotic proteins with well‐defined structures might have arisen early in chemical evolution. The Trp variant, KIA7W, was also studied. It adopts a 3D structure similar to that of KIA7H and its previously studied Tyr and Phe variants, but is remarkably more stable. When tested for ribonucleolytic activity, KIA7H, KIA7W and even short, unstructured peptides rich in His and Lys, in combination with Mg⁺⁺, Mn⁺⁺ or Ni⁺⁺ (but not Cu⁺⁺, Zn⁺⁺ or EDTA) specifically cleave the single‐stranded region in an RNA stem–loop. This suggests that prebiotic peptide–divalent cation complexes with ribonucleolytic activity might have co‐inhabited the RNA world.     

Efficient Visible‐Light‐Driven Carbon Dioxide Reduction by a Single‐Atom Implanted Metal–Organic Framework

Modular optimization of metal–organic frameworks (MOFs) was realized by incorporation of coordinatively unsaturated single atoms in a MOF matrix. The newly developed MOF can selectively capture and photoreduce CO₂ with high efficiency under visible‐light irradiation. Mechanistic investigation reveals that the presence of single Co atoms in the MOF can greatly boost the electron–hole separation efficiency in porphyrin units. Directional migration of photogenerated excitons from porphyrin to catalytic Co centers was witnessed, thereby achieving supply of long‐lived electrons for the reduction of CO₂ molecules adsorbed on Co centers. As a direct result, porphyrin MOF comprising atomically dispersed catalytic centers exhibits significantly enhanced photocatalytic conversion of CO₂, which is equivalent to a 3.13‐fold improvement in CO evolution rate (200.6 μmol g^?1 h^?1) and a 5.93‐fold enhancement in CH₄ generation rate (36.67 μmol g^?1 h^?1) compared to the parent MOF.     

Peptide‐Induced Hierarchical Long‐Range Order and Photocatalytic Activity of Porphyrin Assemblies

Long‐range structural order and alignment over different scales are of key importance for the regulation of structure and functionality in biology. However, it remains a great challenge to engineer and assemble such complex functional synthetic systems with order over different length scales from simple biologically relevant molecules, such as peptides and porphyrins. Herein we describe the successful introduction of hierarchical long‐range order in dipeptide‐adjusted porphyrin self‐assembly by a thermodynamically driven self‐orienting assembly pathway associated with multiple weak interactions. The long‐range order and alignment of fiber bundles induced new properties, including anisotropic birefringence, a large Stokes shift, amplified chirality, and excellent photostability as well as sustainable photocatalytic activity. We also demonstrate that the aligned fiber bundles are able to induce the epitaxially oriented growth of Pt nanowires in a photocatalytic reaction.     

Solid‐State Binding Studies of Group 2 Metal Ions with 12‐Crown‐4

The mode of co‐ordination of 12‐crown‐4 with the heavier group(II) ions Ca²⁺, Sr²⁺ and Ba²⁺ has been studied. Size limitations of the 12‐crown‐4 ligand enforced co‐ordinated metal ions to reside above the macrocyclic plane, with the remaining co‐ordination sphere occupied by water molecules and/or counter anions, or a second crown ether ligand to form a sandwich type species. Variation of the anion, by virtue of its co‐ordinating ability, affects the structural outcome.     

Luminescence Tuning and White‐Light Emission of Co‐doped Ln–Cd–Organic Frameworks

Four new three‐dimensional isostructural lanthanide–cadmium metal–organic frameworks (Ln–Cd MOFs), [LnCd₂(imdc)₂(Ac)(H₂O)₂]?H₂O (Ln=Pr ( 1 ), Eu ( 2 ), Gd ( 3 ), and Tb ( 4 ); H₃imdc=4,5‐imidazoledicarboxylic acid; Ac=acetate), have been synthesized under hydrothermal conditions and characterized by IR, elemental analyses, inductively coupled plasma (ICP) analysis, and X‐ray diffraction. Single‐crystal X‐ray diffraction shows that two Ln^III ions are surrounded by four Cd^II ions to form a heteronuclear building block. The blocks are further linked to form 3D Ln–Cd MOFs by the bridging imdc^3? ligand. Furthermore, the left‐ and right‐handed helices array alternatively in the lattice. Eu–Cd and Tb–Cd MOFs can emit characteristic red light with the Eu^III ion and green light with the Tb^III ion, respectively, while both Gd–Cd and Pr–Cd MOFs generate blue emission when they are excited. Different concentrations of Eu³⁺ and Tb³⁺ ions were co‐doped into Gd–Cd/Pr–Cd MOFs, and tunable luminescence from yellow to white was achieved. White‐light emission was obtained successfully by adjusting the excitation wavelength or the co‐doping ratio of the co‐doped Gd–Cd and Pr–Cd MOFs. These results show that the relative emission intensity of white light for Gd–Cd:Eu³⁺,Tb³⁺ MOFs is stronger than that of Pr–Cd:Eu³⁺,Tb³⁺ MOFs, which implies that the Gd complex is a better matrix than the Pr complex to obtain white‐light emission materials.     

Halide Anion Mediated Dimerization of a meso‐Unsubstituted N‐Confused Porphyrin

The new N‐confused porphyrin (NCP) derivatives, meso‐unsubstituted β‐alkyl‐3‐oxo N‐confused porphyrin (3‐oxo‐NCP) and related macrocycles, were synthesized from appropriate pyrrolic precursors by a [3+1]‐type condensation reaction. 3‐Oxo‐NCP forms a self‐assembled dimer in dichloromethane that is stabilized by complementary hydrogen‐bonding interactions arising from the peripheral amide‐like moieties. The protonated form of 3‐oxo‐NCP was observed to bind halide anions (F^?, Cl^?) through the outer NH and the inner pyrrolic NH groups, thus affording a dimer in dichloromethane. The structure of the chloride‐bridged dimer in the solid state was determined by X‐ray diffraction analysis.     

Hydrogen‐bonded assemblies of 20‐(4‐pyridyl)porphyrin‐54,104,154‐tribenzoic acid with dimethyl sulfoxide and 4‐acetylpyridine in their dimethyl sulfoxide and tetrahydrofuran solvates

Crystals of the title compounds, 20‐(4‐pyridyl)porphyrin‐5⁴,10⁴,15⁴‐tribenzoic acid–dimethyl sulfoxide (2/5), C₄₆H₂₉N₅O₆·2.5C₂H₆OS, (I), and 20‐(4‐pyridyl)porphyrin‐5⁴,10⁴,15⁴‐tribenzoic acid–4‐acetylpyridine–tetrahydrofuran (1/2/10), C₄₆H₂₉N₅O₆·2C₇H₇NO·10C₄H₈O, (II), consist of hydrogen‐bonded supramolecular chains of porphyrin units solvated by molecules of dimethyl sulfoxide [in (I)] and 4‐acetylpyridine [in (II)]. In (I), these chains consist of heterogeneous arrays with alternating porphyrin and dimethyl sulfoxide species, being sustained by COOH...O=S hydrogen bonds. They adopt a zigzag geometry and link on both sides to additional molecules of dimethyl sulfoxide. In (II), the chains consist of homogeneous linear supramolecular arrays of porphyrin units, which are directly connected to one another via COOH...N(pyridyl) hydrogen bonds. As in the previous case, these arrays are solvated on both sides by molecules of the 4‐acetylpyridine ligand via similar COOH(porphyrin)...N(ligand) hydrogen bonds. The two crystal structures contain wide interporphyrin voids, which accommodate disordered/diffused solvent molecules, viz. dimethyl sulfoxide in (I) and tetrahydrofuran in (II).     

Reversible Self‐Assembly of Carboxylated Peptide‐Functionalized Gold Nanoparticles Driven by Metal‐Ion Coordination

Carboxylated peptide‐functionalized gold nanoparticles (peptide‐GNPs) self‐assemble into two‐ and three‐dimensional nanostructures in the presence of various heavy metal ions (i.e. Pb²⁺, Cd²⁺, Cu²⁺, and Zn²⁺) in aqueous solution. The assembly process is monitored by following the changes in the surface plasmon resonance (SPR) band of gold nanoparticles in a UV/Vis spectrophotometer, which shows the development of a new SPR band in the higher‐wavelength region. The extent of assembly is dependent on the amount of metal ions present in the medium and also the time of assembly. TEM analysis clearly shows formation of two‐ and three‐dimensional nanostructures. The assembly process is completely reversible by addition of alkaline ethylenediaminetetraacetic acid (EDTA) solution. The driving force for the assembly of peptide‐GNPs is mainly metal ion/carboxylate coordination. The color and spectral changes due to this assembly can be used for detection of these heavy‐metal ions in solution.     

Energy Transfer and Concentration‐Dependent Conformational Modulation: A Porphyrin‐Containing [3]Rotaxane

A zinc porphyrin‐containing [3]rotaxane A was synthesized through a copper(I)‐catalyzed azide–alkyne cycloaddition (CuAAC) reaction. Energy donors and acceptor porphyrin were introduced to dibenzo[24]crown‐8 (DB24C8) and dibenzyl ammonium (DBA) units of [3]rotaxane A to understand the intramolecular energy transfer process. Investigations of the photophysical properties of [3]rotaxane A demonstrated that the intramolecular efficient energy transfer readily occurred from the donors on the wheels to the porphyrin center on the axis. The fluorescence of energy donors in the region of 400 to 450 nm was efficiently absorbed by the porphyrin acceptor under irradiation at 345 nm, and finally a red light emission at about 600 nm was achieved. Further investigation indicated that the conformation of [3]rotaxane A was self‐modulated by changing its concentration in CH₂Cl₂. The triazole groups on the wheel coordinated or uncoordinated to Zn²⁺ through intramolecular self‐coordination with the change in the concentration of [3]rotaxane A in CH₂Cl₂. Therefore, this conformational change was reversible in a non‐coordinating solvent such as CH₂Cl₂ but inhibited in a coordinating solvent such as THF. Such interesting behaviors were rarely observed in porphyrin derivatives. This self‐modulation feature opens up the possibility of controlling molecular conformation by varying concentration.     

Bioactive Seed Layer for Surface‐Confined Self‐Assembly of Peptides

The design and control of molecular systems that self‐assemble spontaneously and exclusively at or near an interface represents a real scientific challenge. We present here a new concept, an active seed layer that allows to overcome this challenge. It is based on enzyme‐assisted self‐assembly. An enzyme, alkaline phosphatase, which transforms an original peptide, Fmoc‐FFY(PO₄^2?), into an efficient gelation agent by dephosphorylation, is embedded in a polyelectrolyte multilayer and constitutes the “reaction motor”. A seed layer composed of a polyelectrolyte covalently modified by anchoring hydrogelator peptides constitutes the top of the multilayer. This layer is the nucleation site for the Fmoc‐FFY peptide self‐assembly. When such a film is brought in contact with a Fmoc‐FFY(PO₄^2?) solution, a nanofiber network starts to form almost instantaneously which extents up to several micrometers into the solution after several hours. We demonstrate that the active seed layer allows convenient control over the self‐assembly kinetics and the geometric features of the fiber network simply by changing its peptide density.     

Amine‐Rich Nitrogen‐Doped Carbon Nanodots as a Platform for Self‐Enhancing Electrochemiluminescence

Amine‐rich nitrogen‐doped carbon nanodots (NCNDs) have been successfully used as co‐reactant in electrochemiluminescence (ECL) processes. Primary or tertiary amino groups on NCNDs have been studied as co‐reactant sites for Ru(bpy)₃²⁺ ECL, showing their eligibility as powerful alternatives to tripropylamine (TPrA). We also report the synthesis and ECL behavior of a new covalently linked hybrid of NCNDs and Ru(bpy)₃²⁺. Notably, the NCNDs in the hybrid act both as carrier for ECL labels and as co‐reactant for ECL generation. As a result, the hybrid shows a higher ECL emission as compared to the combination of the individual components, suggesting the self‐enhancing ECL of the ruthenium complex due to an intramolecular electron transfer process.     

Photocatalytic Self‐Doped SnO2−x Nanocrystals Drive Visible‐Light‐Responsive Color Switching

Visible‐light‐responsive reversible color‐switching systems are attractive to many applications because visible light has superior penetration and causes far less damage to organic molecules than UV. Herein, we report that self‐doping of SnO_2−x nanocrystals with Sn²⁺ red‐shifts their absorption to the visible region and simultaneously produces oxygen vacancies, which can effectively scavenge photogenerated holes and thus enable the color switching of redox dyes using visible light. Wavelength‐selective switching can also be achieved by coupling the photocatalytic activity of the SnO_2−x NCs with the color‐switching kinetics of different redox dyes. The fast light response enables the further fabrication of a solid film that can be repeatedly written on using a visible laser pen or projection printing through a photomask. This discovery represents a big step forward towards practical applications, especially in areas in which safety issues and photodamage by UV light are of concern.     

Highly Sensitive and Selective Spectroscopic Detection of Mercury(II) in Water by Using Pyridylporphyrin–DNA Conjugates

Single‐labeled pyridylporphyrin–DNA conjugates are reported as highly sensitive and selective spectroscopic sensors for mercury(II) ions in water. The effects of chemical structure (thymine versus adenine), number of nucleotides (monomer versus octamer), and porphyrin metalation (Zn versus free base) on the sensitivity and selectivity of mercury(II) detection are explored. The results indicated that pyridylporphyrin rather than the nucleobase plays a crucial role in mercury(II) sensing, because porphyrin conjugates with both adenosine and thymidine exhibited excellent mercury(II) detection. Mercury(II) recognition was shown in emission quenching, as well as in a redshift of the porphyrin Soret band absorption. The limit of detection (LOD, 3σ/slope) of zinc(II) pyridylporphyrin‐5′‐oligodeoxythymidine ( ZnPorT8 ) obtained by fluorescence quenching was calculated to be 21.14 nM . Other metal cations (Zn²⁺, Cd²⁺, Pb²⁺, Mn²⁺, Ca²⁺, Ni²⁺, Mg²⁺, Fe²⁺, Cu²⁺, and Na⁺) did not interfere with the emission and absorption sensing of mercury(II). Free‐base porphyrin–oligothymine conjugate 2HPorT8 displayed similar sensitivity to ZnPorT8 but different selectivity. The results also implied that the sensing properties of porphyrin–deoxythymidine conjugates could potentially be tuned by porphyrin metalation.     

Zn2+‐Regulated Self‐Sorting and Mixing of Phosphates and Carboxylates on the Surface of Functionalized Gold Nanoparticles

Herein, we describe the self‐sorting of phosphate‐ and carboxylate‐containing molecules on the surface of monolayer‐protected gold nanoparticles. Self‐sorting is driven by selective interactions between the phosphate probe and Zn²⁺ complexes in one monolayer; these interactions force the carboxylate probe to move to a second type of nanoparticle. This process effectively separates the probes and causes their localization in well‐defined spaces surrounding the nanoparticles. The removal/addition of Zn²⁺ metal ions from the system is used to convert the system from an ordered to a disordered state and vice versa. The possibility to control the location and transport of populations of molecules in a complex mixture creates new perspectives for the development of innovative complex catalytic systems that mimic nature.     

Multifunctional Nitrogen‐Doped Carbon Nanodots for Photoluminescence,Sensor, and Visible‐Light‐Induced H2 Production

Herein, multifunctional N‐doped carbon nanodots (NCNDs) were prepared through the one‐step hydrothermal treatment of yeast. Results show that the NCNDs can be used as a new photocatalyst to drive the water‐splitting reaction under UV light. Moreover, the NCNDs can efficiently catalyze the hydrogen evolution reaction. Under visible‐light irradiation, Eosin Y‐sensitized NCNDs exhibit excellent activity for hydrogen evolution. The hydrogen evolution rate of NCNDs (without any modification and co‐catalyst) reaches 107.1 μmol h^?1 (2142 μmol g^?1 h^?1). When Pt is loaded on the NCNDs, the hydrogen evolution rate reaches 491.2 μmol h^?1 (9824 μmol g^?1 h^?1) under visible‐light irradiation. In addition, the NCNDs show excellent fluorescent properties and can be applied as a fluorescent probe for the sensitive and selective detection of Fe³⁺.     

Energy transfer from fluorene‐based conjugated polyelectrolytes to on‐chain and self‐assembled porphyrin units

A new water soluble fluorene‐based polyelectrolyte containing on‐chain porphyrin units has been synthesized via Suzuki coupling, for use in optoelectronic devices. The material consist of a random copolymer of poly{1,4‐phenylene‐[9,9‐bis(4‐phenoxy butylsulfonate)]fluorene‐2,7‐diyl} (PBS‐PFP) and a 5,15‐diphenylporphyrin (DPP). The energy transfer process between the PBS‐PFP units and the porphyrin has been investigated through steady state and time‐resolved measurements. The copolymer PBS‐PFP‐DPP displays two different emissions one located in the blue region of the spectra, corresponding to the fluorene part and another in the red due to fluorescent DPP units either formed directly or by exciton transfer. However, relatively inefficient energy transfer from the PFP to the on‐chain porphyrin units was observed. We compare this with a system involving an anionic blue light‐emitting donor PBS‐PFP and a anionic red light‐emitting energy acceptor meso‐tetrakisphenylporphyrinsulfonate (TPPS), self‐assembled by electrostatic attraction induced by Ca²⁺. Based on previous studies related to chain aggregation of the anionic copolymer PBS‐PFP, two different solvent media were chosen to further explore the possibilities of the self‐assembled system: dioxane–water and aqueous nonionic surfactant n‐dodecylpentaoxyethylene glycol ether (C₁₂E₅). In contrast, with the on‐chain PBS‐PFP‐DPP system the strong overlap of the 0‐0 emission peak of the PBS‐PFP and the Soret absorption band of the TPPS results in an efficient Förster transfer. This is strongly dependent on the solvent medium used. © 2012 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem, 2012     

Synthesis of Peptide‐Based Hybrid Nanobelts with Enhanced Color Emission by Heat Treatment or Water Induction

We demonstrate that an inorganic lanthanide ion (Tb³⁺) or organic dye molecules were encapsulated in situ into diphenylalanine (FF) organogels by a general, simple, and efficient co‐assembly process, which generated peptide‐based hybrid nanobelts with a range of colored emissions. In the presence of a photosensitizer (salicylic acid), the organogel can serve as an excellent molecular‐donor scaffold to investigate FRET to Tb³⁺. More importantly, heat treatment or water induction instigated a morphology transition from nanofibers to nanobelts, after which the participation of guest molecules in the FF assembly was promoted and the stability and photoluminescence emission of the composite organogels were enhanced.     

Ultrasound‐Driven Secondary Self‐Assembly of Amphiphilic β‐Cyclodextrin Dimers

The controlled secondary self‐assembly of amphiphilic molecules in solution is theoretically and practically significant in amphiphilic molecular applications. An amphiphilic β‐cyclodextrin (β‐CD) dimer, namely LA‐(CD)₂, has been synthesized, wherein one lithocholic acid (LA) unit is hydrophobic and two β‐CD units are hydrophilic. In an aqueous solution at room temperature, LA‐(CD)₂ self‐assembles into spherical micelles without ultrasonication. The primary micelles dissociates and then secondarily form self‐assemblies with branched structures under ultrasonication. The branched aggregates revert to primary micelles at high temperature. The ultrasound‐driven secondary self‐assembly is confirmed by transmission electron microscopy, dynamic light scattering, ¹H NMR spectroscopy, and Cu²⁺‐responsive experiments. Furthermore, 2D NOESY NMR and UV/Vis spectroscopy results indicate that the formation of the primary micelles is driven by hydrophilic–hydrophobic interactions, whereas host–guest interactions promote the formation of the secondary assemblies. Additionally, ultrasonication is shown to be able to effectively destroy the primary hydrophilic–hydrophobic balances while enhancing the host–guest interaction between the LA and β‐CD moieties at room temperature.     

Synthese und Struktur von N,N,N‴,N‴‐Tetraisobutyl‐N′,N″‐isophthaloylbis(thioharnstoff) und Dimethanol‐bis(N,N,N‴,N‴‐tetraisobutyl‐N′,N″‐isophthaloylbis(thioureato))dicobalt(II)

Synthesis and Structure of N,N,N?,N?‐Tetraisobutyl‐N′,N″‐isophthaloylbis(thiourea) and Dimethanol‐bis(N,N,N?,N?‐tetraisobutyl‐N′,N″‐isophthaloylbis(thioureato))dicobalt(II) The synthesis and the crystal structure of the ligand N,N,N?,N?‐tetraisobutyl‐N′,N″‐isophthaloylbis(thiourea) and its Co^II‐complex are reported. The ligand co‐ordinates quadridentately forming a di‐bischelate. The donor atoms O and S are arranged in cis‐position around the central Co^II ions. In addition the co‐ordination geometry is determined by methanol molecules resulting in the co‐ordination number five. The complex crystallizes in the space group P1 (Z = 1) with two additional methanol molecules per formula unit. The free ligand crystallizes in the space group P1 (Z = 2) with one methanol molecule per formula unit. It shows the typical keto form of N‐acylthioureas with a protonated central N atom. The structures of both acylthiourea fragments come close to E,Z′‐configurations.     

Stapled Peptides by Late‐Stage C(sp3)−H Activation

Despite the importance of stapled peptides for drug discovery, only few practical processes to prepare cross‐linked peptides have been described; thus the structural diversity of available staple motifs is currently limited. At the same time, C−H activation has emerged as an efficient approach to functionalize complex molecules. Although there are many reports on the C−H functionalization of amino acids, examples of post‐synthetic peptide C−H modification are rare and comprise almost only C(sp²)−H activation. Herein, we report the development of a palladium‐catalyzed late‐stage C(sp³)−H activation method for peptide stapling, affording an unprecedented hydrocarbon cross‐link. This method was first employed to prepare a library of stapled peptides in solution. The compatibility with various amino acids as well as the influence of the size (i ,i +3 and i ,i +4) and length of the staple were investigated. Finally, a simple solid‐phase procedure was also established.