Total Synthesis and Structural Reassignment of Aspergillomarasmine A

The increase and spread of Gram‐negative bacteria that resistant are to almost all currently available β‐lactam antibiotics is a major global health problem. The primary cause for drug resistance is the acquisition of metallo‐β‐lactamases such as metallo‐β‐lactamase‐1 (NDM‐1). The fungal natural product aspergillomarasmine A (AMA), a fungal natural product, is an inhibitor of NDM‐1 and has shown promising in vivo therapeutic potential in a mouse model infected with NDM‐1‐expressing Gram‐negative bacteria. The first total synthesis and stereochemical configuration reassignment of aspergillomarasmine A is reported. The synthesis highlights a flexible route and an effective strategy to achieve the required oxidation state at a late stage. This modular route is amenable to the efficient preparation of analogues for the development of metallo‐β‐lactamase inhibitors to potentiate β‐lactam antibiotics.     

Real‐Time Monitoring of New Delhi Metallo‐β‐Lactamase Activity in Living Bacterial Cells by 1H NMR Spectroscopy

Disconnections between in vitro responses and those observed in whole cells confound many attempts to design drugs in areas of serious medical need. A method based on 1D ¹H NMR spectroscopy is reported that affords the ability to monitor the hydrolytic decomposition of the carbapenem antibiotic meropenem inside Escherichia coli cells expressing New Delhi metallo‐β‐lactamase subclass 1 (NDM‐1), an emerging antibiotic‐resistance threat. Cell‐based NMR studies demonstrated that two known NDM‐1 inhibitors, L ‐captopril and ethylenediaminetetraacetic acid (EDTA), inhibit the hydrolysis of meropenem in vivo. NDM‐1 activity in cells was also shown to be inhibited by spermine, a porin inhibitor, although in an in vitro assay, the influence of spermine on the activity of isolated NDM‐1 protein is minimal. This new approach may have generic utility for monitoring reactions involving diffusible metabolites in other complex biological matrices and whole‐cell settings, including mammalian cells.     

Monitoring Conformational Changes in the NDM‐1 Metallo‐β‐lactamase by 19F NMR Spectroscopy

The New Delhi metallo‐β‐lactamase (NDM‐1) is involved in the emerging antibiotic resistance problem. Development of metallo‐β‐lactamases (MBLs) inhibitors has proven challenging, due to their conformational flexibility. Here we report site‐selective labeling of NDM‐1 with 1,1,1‐trifluoro‐3‐bromo acetone (BFA), and its use to study binding events and conformational changes upon ligand–metal binding using ¹⁹F NMR spectroscopy. The results demonstrate different modes of binding of known NDM‐1 inhibitors, including L ‐ and D ‐captopril by monitoring the changing chemical environment of the active‐site loop of NDM‐1. The method described will be applicable to other MBLs and more generally to monitoring ligand‐induced conformational changes.     

Target‐Based Whole‐Cell Screening by 1H NMR Spectroscopy

An NMR‐based approach marries the two traditional screening technologies (phenotypic and target‐based screening) to find compounds inhibiting a specific enzymatic reaction in bacterial cells. Building on a previous study in which it was demonstrated that hydrolytic decomposition of meropenem in living Escherichia coli cells carrying New Delhi metallo‐β‐lactamase subclass 1 (NDM‐1) can be monitored in real time by NMR spectroscopy, we designed a cell‐based NMR screening platform. A strong NDM‐1 inhibitor was identified with cellular IC₅₀ of 0.51 μM , which is over 300‐fold more potent than captopril, a known NDM‐1 inhibitor. This new screening approach has great potential to be applied to targets in other cell types, such as mammalian cells, and to targets that are only stable or functionally competent in the cellular environment.     

Backfilling‐Free Strategy for Biopatterning on Intrinsically Dual‐Functionalized Poly[2‐Aminoethyl Methacrylate‐co‐Oligo(Ethylene Glycol) Methacrylate] Films

We demonstrated protein and cellular patterning with a soft lithography technique using poly[2‐aminoethyl methacrylate‐co‐oligo(ethylene glycol) methacrylate] films on gold surfaces without employing a backfilling process. The backfilling process plays an important role in successfully generating biopatterns; however, it has potential disadvantages in several interesting research and technical applications. To overcome the issue, a copolymer system having highly reactive functional groups and bioinert properties was introduced through a surface‐initiated controlled radical polymerization with 2‐aminoethyl methacrylate hydrochloride (AMA) and oligo(ethylene glycol) methacrylate (OEGMA). The prepared poly(AMA‐co‐OEGMA) film was fully characterized, and among the films having different thicknesses, the 35 nm‐thick biotinylated, poly(AMA‐co‐OEGMA) film exhibited an optimum performance, such as the lowest nonspecific adsorption and the highest specific binding capability toward proteins.     

Temperature‐sensitive hydrogel microspheres formed by liquid–liquid phase transitions of aqueous solutions of poly(N,N‐dimethylacrylamide‐co‐allyl methacrylate)

Poly(N,N‐dimethylacrylamide‐co‐allyl methacrylate) (DMA‐co‐AMA) copolymers were prepared by the copolymerization of N,N‐dimethylacrylamide with allyl methacrylate (AMA). The methacryloyl group of AMA reacted preferentially, and this resulted in pendant allyl groups along the copolymer chains. Aqueous solutions of these DMA‐co‐AMA copolymers were thermoresponsive and showed liquid–liquid phase transitions at temperatures that depended on the AMA content. Hydrogel microspheres were prepared from these thermally phase‐separated liquid microdroplets by the free‐radical crosslinking of the pendant allyl groups. The morphologies of the resulting thermoresponsive microspheres as a function of the reaction temperature and the amount of the initiator were examined. © 2005 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem 43: 1641–1648, 2005     

Manipulation of chain transfer agent and cross-linker concentration to modify latex micro-structure for pressure-sensitive adhesives

N-Dodecyl mercaptan (NDM) chain transfer agent and allyl methacrylate (AMA) cross-linker were used to manipulate latex properties in a starved seeded semi-batch emulsion polymerization of butyl acrylate (BA) and methyl methacrylate (MMA) or with a third monomer, acrylic acid (AA). Latexes with higher gel content and lower sol polymer molecular weight (M_w) were produced by adding only AMA. On the other hand, latexes with lower gel content and M_w were produced by adding only NDM. In addition, at a constant AMA concentration (0.2 phm), the addition of NDM (0.2 phm) decreased gel content, increased molecular weight between cross-linking points (M_c), and decreased M_w. Adding more NDM (to a total of 0.4 phm) further decreased the gel content, while decreasing the tested M_c and increasing M_w. It was also found that using higher concentrations of both AMA and NDM could produce latex with similar gel content, but smaller M_c and M_w, compared to the latex produced at lower concentrations of both NDM and AMA. Regarding the influence of AA, gel content was increased and M_w was significantly decreased with an increase in AA concentration and a decrease in MMA concentration. The performance of the latexes was evaluated for application as a pressure-sensitive adhesive (PSA).     

Serological comparative proteomics analysis of mitochondrial autoantibody‐negative and ‐positive primary biliary cirrhosis

Here, we investigated the pathogenesis of primary biliary cirrhosis (PBC) by using 2D‐DIGE to analyze serological differences between anti‐mitochondrial antibody (AMA)‐positive and ‐negative PBC patients. The study comprised 30 patients with PBC; 20 AMA‐positive and ten AMA‐negative patients matched for age, sex , and pathological stage. A screening group (four AMA‐positive and four AMA‐negative patients) was used for 2D‐DIGE. Protein spots that were differently abundant between the two groups were identified via dye intensity and MS. Nine candidate proteins were identified from these spots. Western blotting was used to verify two of the identified proteins, serum amyloid P‐component (SAP) and vitronectin (VN). VN levels were significantly higher in the sera of AMA‐negative PBC patients (p < 0.01), whereas no significant difference was found between the two groups for SAP. To our knowledge, this is the first study to use serological comparative proteomics to explore differences between AMA‐positive and ‐negative PBC patients. VN levels were higher in AMA‐negative PBC patients, and this finding could be related to the more severe bile duct destruction observed in this group.     

Cyclic Peptidomimetics Derived from the Apical Membrane Antigen I of Plasmodium falciparum and Their Use in Malaria Vaccine Design

A library of 35 cyclic peptidomimetics has been prepared, by a combination of solid‐ and solution‐phase methods, which, together, scan amino acid residues 444–489 in a protruding loop in the subdomain‐III of the apical membrane antigen‐I (AMA‐I), an integral membrane protein found on the surface of Plasmodium falciparum merozoites. The mimetics each contain twelve residues from AMA‐I linked through the N‐ and C‐termini to a β‐hairpin‐inducing template, comprising the dipeptide D ‐proline‐L ‐Apro (Apro=cis‐4‐amino‐L ‐proline). These peptidomimetics were each coupled via the 4‐amino group to a phospholipid, which allows their incorporation into reconstituted influenza virus‐like particles (virosomes) for immunization of mice, as well as their use in ELISA to characterize epitopes recognized by anti‐AMA‐I growth‐inhibitory monoclonal antibodies.     

Determination of Amantadine Residue in Honey by Solid‐phase Extraction and High‐performance Liquid Chromatography with Pre‐column Derivatization and Fluorometric Detection

Amantadine (AMA) is an anti‐viral drug used in apiculture to protect honeybee against the sacbrood virus (Morator aetatulae). This study described a reliable high‐performance liquid chromatographic (HPLC) method for analyzing AMA in honey using a solid‐phase extraction (SPE) cartridge (Plexa PCX) for purification, 4‐fluoro‐7‐nitro‐2,1,3‐benzoxadiazole (NBD‐F) as a pre‐column derivatization agent, and fluorometric detection (λ_ex=470 nm, λ_em=530 nm). The chromatographic separation was performed on an XDB C18 column (150×4.6 mm i.d.) using 0.1% trifluoroacetic acid/acetonitrile (35:65,V/V) as the mobile phase at a flow rate of 1.0 mL·min⁻¹ with a run time of 20 min. Under these optimal conditions, a linear relationship was observed in the range of 0.025–1.0 µg· mL⁻¹ with a good correlation coefficient (0.998) and low limit of detection (0.0080 µg·g⁻¹), the recoveries were all above 90%, and the intra‐day and inter‐day precision (RSD) ranged from 3.4%–5.1%.     

Stabilization of G‐Quadruplex DNA with Platinum(II) Schiff Base Complexes: Luminescent Probe and Down‐Regulation of c‐myc Oncogene Expression

The interactions of a series of platinum(II) Schiff base complexes with c‐myc G‐quadruplex DNA were studied. Complex [PtL ^1a ] ( 1 a ; H₂L ^1a =N,N′‐bis(salicylidene)‐4,5‐methoxy‐1,2‐phenylenediamine) can moderately inhibit c‐myc gene promoter activity in a cell‐free system through stabilizing the G‐quadruplex structure and can inhibit c‐myc oncogene expression in cultured cells. The interaction between 1 a and G‐quadruplex DNA has been examined by ¹H NMR spectroscopy. By using computer‐aided structure‐based drug design for hit‐to‐lead optimization, an in silico G‐quadruplex DNA model has been constructed for docking‐based virtual screening to develop new platinum(II) Schiff base complexes with improved inhibitory activities. Complex [PtL ³ ] ( 3 ; H₂L ³ = N,N′‐bis{4‐[1‐(2‐propylpiperidine)oxy]salicylidene}‐4,5‐methoxy‐1,2‐phenylenediamine) has been identified with a top score in the virtual screening. This complex was subsequently prepared and experimentally tested in vitro for its ability to stabilize or induce the formation of the c‐myc G‐quadruplex. The inhibitory activity of 3 (IC₅₀=4.4 μM ) is tenfold more than that of 1 a . The interaction between 1 a or 3 with c‐myc G‐quadruplex DNA has been examined by absorption titration, emission titration, molecular modeling, and NMR titration experiments, thus revealing that both 1 a and 3 bind c‐myc G‐quadruplex DNA through an external end‐stacking mode at the 3’ terminal face of the G‐quadruplex. Such binding of G‐quadruplex DNA with 3 is accompanied by up to an eightfold increase in the intensity of photoluminescence at λ_max=652 nm. Complex 3 also effectively down‐regulated the expression of c‐myc in human hepatocarcinoma cells.     

Synthesis and biological activity of new 1H‐Pyrazolo[3,4‐b]quinoxalines (flavazoles)

A novel series of flavazoles 3a‐1 were synthesized via dehydrative cyclization of a new series of 3‐[(α‐arylhydrazono)‐aroylmethyl]quinoxalin‐2(1H)‐ones 2a‐1 and their biological activity has been evaluated. The tautomeric structure of the precursors 2a‐1 has also been elucidated.     

A successive route to amphiphilic graft copolymers with a hydrophilic poly(3‐hydroxypropyl methacrylate) backbone and hydrophobic polystyrene side chains

A successive method for preparing novel amphiphilic graft copolymers with a hydrophilic backbone and hydrophobic side chains was developed. An anionic copolymerization of two bifunctional monomers, namely, allyl methacrylate (AMA) and a small amount of glycidyl methacrylate (GMA), was carried out in tetrahydrofuran (THF) with 1,1‐diphenylhexyllithium (DPHL) as the initiator in the presence of LiCl ([LiCl]/[DPHL]₀ = 2), at −50 °C. The copolymer poly(AMA‐co‐GMA) thus obtained possessed a controlled molecular weight and a narrow molecular weight distribution (M_w /M_n = 1.08–1.17). Without termination and polymer separation, a coupling reaction between the epoxy groups of this copolymer and anionic living polystyrene [poly(St)] at −40 °C generated a graft copolymer with a poly(AMA‐co‐GMA) backbone and poly(St) side chains. This graft copolymer was free of its precursors, and its molecular weight as well as its composition could be well controlled. To the completed coupling reaction solution, a THF solution of 9‐borabicyclo[3.3.1]nonane was added, and this was followed by the addition of sodium hydroxide and hydrogen peroxide. This hydroboration changed the AMA units of the backbone to 3‐hydroxypropyl methacrylate, and an amphiphilic graft copolymer with a hydrophilic poly(3‐hydroxypropyl methacrylate) backbone and hydrophobic poly(St) side chains was obtained. © 2000 John Wiley & Sons, Inc. J Polym Sci A: Polym Chem 38: 1195–1202, 2000     

A Hydrogen‐Bonded Hexagonal Buckybowl Framework

A hydrogen‐bonded two‐dimensionally networked buckybowl architecture is presented. Two types of hexagonal network (HexNet) structures ( CPSM‐1 and CPSM‐2 ) have been achieved based on a sumanene derivative ( CPSM ) possessing 4,4′‐dicarboxy‐o ‐terphenyl groups in the periphery. CPSM‐1 has a waved HexNet structure with an alternate alignment of upward and downward bowls. CPSM‐2 has a bilayered HexNet structure composed of hamburger‐shaped dimers of the bowls. This demonstrates that non‐planar π‐systems can be networked two‐dimensionally by an appropriate supramolecular synthon to achieve structurally well‐defined unique bumpy π‐sheets. Furthermore, we revealed that CPSM‐2 undergoes anisotropic shrinking along the c axis by 11 % under high pressure conditions (970 MPa). The shrinkage is brought about by offset sliding between bumpy π‐surfaces of the bilayered HexNet sheets.     

Synthesis,Bioactivities and Structure Activity Relationship of N‐4‐Methyl‐1,2,3‐thiadiazole‐5‐carbonyl‐N′‐phenyl Ureas

Twenty nine novel N‐4‐methyl‐1,2,3‐thiadiazole‐5‐carbonyl‐N′‐phenyl ureas were designed and synthesized, and their structures were confirmed by proton nuclear magnetic resonance (¹H NMR), infra red spectroscopy (IR) and high‐resolution mass spectroscopy (HRMS). Compounds V‐9 , V‐11 , V‐12 , V‐15 , V‐19 , V‐21 , V‐22 and V‐24 exhibit excellent activity against Culex pipiens pallens. Compounds V‐12 and V‐22 present good insecticidal activity against Plutella xylostella L. Their median lethal concentrations (LC₅₀) are 164.15 and 89.69 mg·L^?1, respectively. Compound V‐11 also has potential wide spectrum of fungicide activity. Its median effective concentrations (EC₅₀) detected from 3.82 µg·mL^?1 against Physalospora piricola to 31.60 µg·mL^?1 against Cercospora arachidicola. Compounds V‐15 and V‐24 show outstanding induction activities as same as positive controls TDL and ningnanmycin, furthermore V‐24 has the highest induction activity of 41.85%±4.43%. To elucidate the structure activity relationship in these compounds, a 3D‐QSAR model has been built. The established model showed a reliable predicting ability with q² values of 0.643 and r² values of 0.982.     

Synthesis and Antiproliferative Activities of OSW‐1 Analogues Bearing 2”‐O‐p‐Acylaminobenzoyl Residues†

OSW‐1 is a well‐known natural saponin with potent antitumor activities. We have designed and prepared a small library of 22 OSW‐1 analogues with a variety of p‐acylamino‐benzoyl groups installed at C2” of the xylose residue, wherein a regioselective (1→3)‐glycosylation of arabinoside 3,4‐diol has been achieved by manipulation of the protecting groups on the imidate donors. Bioassays lead to new structure‐activity relationships as well as two applicable fluorescent probes, which are found to localize to lysosomes in HeLa cells and could be used in further antitumor mechanism studies of OSW‐1 in living cells.     

Glass transition temperature of allyl methacrylate‐n‐butyl acrylate gradient copolymers in dependence on chemical composition and molecular weight

Glass transition temperatures (T_gs) of P(AMA‐co‐BA) copolymers and the corresponding homopolymers, where AMA is allyl methacrylate and BA is n‐butyl acrylate, obtained by means of atom transfer radical polymerization were measured using differential scanning calorimetry. Because of the (pseudoliving) nature of this polymerization technique an increase in molecular weight (MW) is produced as the reaction progresses, which gives rise to an increase in T_gs. This increment can be adequately described by the Fox–Flory's equation in both homopolymers. However, in the spontaneous gradient copolymers of P(AMA‐co‐BA), the expected increase in T_g with the augment of the monomer conversion is compensated by the enrichment of BA as the polymerization reaction progresses. These opposite effects with respect to the T_g values almost balance each other, and therefore no significant influence on the MW or on conversion is found. This fact establishes that T_gs can be used to describe the profile of these gradient copolymers, and can be theoretically determined because of its dependence on the molar fraction in the copolymer. From this dependence on chemical composition along with the experimental behavior, a prediction of the T_g variation with the MW was performed. © 2007 Wiley Periodicals, Inc. J Polym Sci Part B: Polym Phys 45: 1845–1855, 2007     

Synthesis and anti‐HIV activity of n‐(3‐amino‐3,4‐dihydro‐4‐oxopyrimidin‐2‐yl)‐4‐chloro‐2‐mercapto‐5‐methylbenzenesulfonamide derivatives

A series of N‐(3‐amino‐3,4‐dihydro‐4‐oxopyrimidin‐2‐yl)‐4‐chloro‐2‐mercapto‐5‐methylbenzenesulfonamide derivatives 10‐17 have been synthesized as potential anti‐HIV agents. The in vitro anti‐HIV‐1 activity of these compounds has been tested at the national Cancer Institute (Bethesda, MD), and the structure‐activity relationships are discussed. The selected N‐[3‐amino‐3,4‐dihydro‐6‐(tert‐butyl)‐4‐oxothieno[2,3‐e]pyrimidin‐2‐yl]‐4‐chloro‐2‐metcapto‐5‐methylbenzenesulfonamide ( 14 ) showed good anti‐HIV‐1 activity with 50% effective concentration (EC₅₀) value of 15 μM and weak cytotoxic effect (IC₅₀ = 106 μM).     

Heterospirocyclic N‐(2H‐Azirin‐3‐yl)‐L‐prolinates: New Dipeptide Synthons

The synthesis of methyl N‐(1‐aza‐6‐oxaspiro[2.5]oct‐1‐en‐2‐yl)‐L ‐prolinate ( 1e ) has been performed by consecutive treatment of methyl N‐[(tetrahydro‐2H‐pyran‐4‐yl)thiocarbonyl]‐L ‐prolinate ( 5 ) with COCl₂, 1,4‐diazabicyclo[2.2.2]octane (DABCO), and NaN₃ (Scheme 1). As the first example of a novel class of dipeptide synthons, 1e has been shown to undergo the expected reactions with carboxylic acids and thioacids (Scheme 2). The successful preparation of the nonapeptide 16 , which is an analogue of the C‐terminal nonapeptide of the antibiotic Trichovirin I 1B, proved that 1e can be used in peptide synthesis as a dipeptide building block (Scheme 3). The structure of 7 has been established by X‐ray crystal‐structure analysis (Figs. 1 and 2).