Microwave rotational spectra and structures of 2-fluoropyridine and 3-fluoropyridine

The ground state rotational spectra of 2-fluoropyridine and 3-fluoropyridine have been investigated using both Fourier transform microwave (FTMW) and chirped pulse Fourier transform microwave (cp-FTMW) spectroscopies. In addition to the parent species, the spectra of the (13)C and (15)N singly substituted isotopologues were recorded in the 8-23 GHz region in natural abundance. The rotational constants determined for the seven isotopologues of each were used to calculate relevant geometric parameters including the bond distances and angles of the pyridine ring backbone. The derived structures show a more pronounced deviation from the pyridine ring geometry when the fluorine substituent is ortho to nitrogen which is consistent with ab initio predictions at various levels of theory. Analysis of the (14)N hyperfine structure provided an additional source of information about the electronic structure surrounding the nitrogen atom as a function of fluorine substitution. Together, the experimental results are consistent with a bonding model that involves hyperconjugation whereby fluorine donates electron density from its lone pair into the π-system of pyridine.     

Ab initio and experimental studies of the large-amplitude motion in BF2OH

The ground state rotational spectrum of BF2OH was measured under high resolution by microwave Fourier transform spectroscopy (FTMW), and the small torsional splitting could be resolved for several lines. This splitting was analyzed using a phenomenological model previously developed for HNO3 [Coudert and Perrin, J. Mol. Spectrosc. 1995, 172, 352] and with the help of the geometries of the stationary points calculated ab initio. The torsional splitting was also calculated using the results of the calculations for the ground vibrational state, for the excited OH torsional states 91 and 92, and for the excited BOH bending state 41, and a satisfactory agreement with available experimental data was found.     

Impact of molecular conformation on barriers to internal methyl rotation: the rotational spectrum of m-methylbenzaldehyde

The ground state spectrum of m-methylbenzaldehyde (m-MBA) was measured with a chirped-pulse Fourier transform microwave (CP-FTMW) spectrometer. The methyl rotor on m-MBA introduces an internal rotation barrier, which leads to splitting of the torsional energy level degeneracy into A and E states. Ab initio calculations predict a low torsional barrier for both the O-cis and O-trans conformers, resulting in a large doublet splitting up to several gigahertz in the frequency spectrum. The rotational constants, distortion terms, and V(3) values for both species have been determined from the ground state rotational spectrum using the BELGI-C(s) fitting program. There are significant differences in the torsional potential for the O-cis and O-trans m-MBA conformers. Molecular orbitals and resonance structures for each conformer are analyzed to understand the difference in torsional barrier height as well as the irregular shape of the O-trans torsional potential.     

Structural and conformational properties of 2-propenylgermane (allylgermane) studied by microwave and infrared spectroscopy and quantum chemical calculations

The structural and conformational properties of allylgermane have been investigated using Stark and Fourier transform microwave spectroscopies, infrared spectroscopy, and high-level quantum chemical calculations. The parent species H2C=CHCH2GeH3 was investigated by microwave spectroscopy and infrared spectroscopy, while three deuterated species, namely, H2C=CDCH2GeH3, H2C=CHCHDGeH3, and H2C=CHCH2GeD3, were studied only by infrared spectroscopy. The microwave spectra of the ground vibrational state as well as of the first excited state of the torsion vibration around the sp2-sp3 carbon-carbon bond were assigned for the 70Ge, 72Ge, and 74Ge isotopomers of one conformer. This rotamer has an anticlinal arrangement for the C=C-C-Ge chain of atoms. The infrared spectrum of the gas in the 500-4000 cm(-1) range has been assigned. No evidence of additional rotameric forms other than anticlinal was seen in the microwave and infrared spectra. Several different high-level ab initio and density functional theory calculations have been performed. These calculations indicate that a less stable form, having a synperiplanar conformation of the C=C-C-Ge link of atoms, may coexist with the anticlinal form. The energy differences between the synperiplanar and anticlinal forms were calculated to be 5.6-9.2 kJ/mol depending on the computational procedure. The best approximation of the equilibrium structure of the anticlinal rotamer was found in the MP2/aug-cc-pVTZ calculations. The barrier to internal rotation of the germyl group was found to be 6.561(17) kJ/mol, from measurements of the splitting of microwave transitions caused by tunneling of the germyl group through its threefold barrier.     

Tetrasulfur, S4: rotational spectrum, interchange tunneling, and geometrical structure

The rotational spectrum of S4 has been observed for the first time in an electrical discharge through sulfur vapor. Two techniques have been used: Fourier transform microwave spectroscopy and long-path millimeter-wave absorption spectroscopy. Small, but systematic shifts of the measured transition frequencies of the normal isotopic species indicate that S4 has C2v symmetry but with a low-lying transition state of D2h symmetry, yielding interchange tunneling at 14.1(2) kHz in its ground vibrational state. From the rotational constants of the normal and the single 34S isotopic species, an experimental (r0) structure has been derived: S4 is a singlet planar trapezoid with a terminal bond length of 1.899(7) A, a central bond of 2.173(32) A, and an S-S-S angle of 103.9(8) degrees. Like thiozone (S3), S4 is a candidate for detection in the atmosphere of the Jovian moon Io and in other astronomical sources.     

A microwave spectroscopic and quantum chemical study of propa-1,2-dienyl selenocyanate (H(2)==C==CHSeC[triple bond]N) and cyclopropyl selenocyanate (C(3)H(5)SeC[triple bond]N)

The microwave spectra of propa-1,2-dienyl selenocyanate, H(2)C==C==CHSeC[triple bond]N, and cyclopropyl selenocyanate, C(3)H(5)SeC[triple bond]N, are reported. The spectra of the ground and two vibrationally excited states of the (80)Se isotopologue and the spectrum of the ground state of the (78)Se isotopologue were assigned for one rotameric form of H(2)C==C[double bond, length as m-dash]CHSeC[triple bond]N. This conformer is characterized by a C-C-Se-C dihedral angle of 129(5) degrees from synperiplanar (0 degrees ) and is shown to be the global minimum of H(2)C[double bond, length as m-dash]C[double bond, length as m-dash]CHSeC[triple bond]N. The spectra of the ground and of three vibrationally excited states of the (80)Se isotopologue, as well as of the ground state of the (78)Se isotopologue of one rotamer of C(3)H(5)SeC[triple bond]N were assigned. This conformer has a H-C-Se-C dihedral angle of 80(4) degrees from synperiplanar and is at least 3 kJ mol(-1) more stable than any other form of the molecule. The microwave study has been augmented by quantum chemical calculations at the B3LYP/6-311+ +G(3df,3pd) and MP2/6-311+ +G(3df,3pd) levels of theory.     

Rotational spectroscopy of the isotopic species of silicon monosulfide, SiS

Pure rotational transitions of silicon monosulfide ((28)Si(32)S) and its rare isotopic species have been observed in their ground as well as vibrationally excited states by employing Fourier transform microwave (FTMW) spectroscopy of a supersonic molecular beam at centimetre wavelengths (13-37 GHz) and by using long-path absorption spectroscopy at millimetre and submillimetre wavelengths (127-925 GHz). The latter measurements include 91 transition frequencies for (28)Si(32)S, (28)Si(33)S, (28)Si(34)S, (29)Si(32)S and (30)Si(32)S in upsilon = 0, as well as 5 lines for (28)Si(32)S in upsilon = 1, with rotational quantum numbers J'< or = 52. The centimetre-wave measurements include more than 300 newly recorded lines. Together with previous data they result in almost 600 transitions (J' = 0 and 1) from all twelve possible isotopic species, including (29)Si(36)S and (30)Si(36)S, which have fractional abundances of about 7 x 10(-6) and 4.5 x 10(-6), respectively. Rotational transitions were observed from upsilon = 0 for the least abundant isotopic species to as high as upsilon = 51 for the main species. Owing to the high spectral resolution of the FTMW spectrometer, hyperfine structure from the nuclear electric quadrupole moment of (33)S was resolved for species containing this isotope, as was much smaller nuclear spin-rotation splitting for isotopic species involving (29)Si. By combining the measurements here with previously published microwave and infrared data in one global fit, an improved set of spectroscopic parameters for SiS has been derived which include several terms describing the breakdown of the Born-Oppenheimer approximation. With this parameter set, highly accurate rotational frequencies for this important astronomical molecule can now be predicted well into the terahertz region.     

The conformers of phenylglycine

The neutral form of the unnatural amino acid phenylglycine was vaporized by laser ablation, and the presence of two conformers was detected in a supersonic expansion by Fourier transform microwave spectroscopy. Both conformers were unequivocally identified by comparison of their experimental rotational and quadrupole coupling constants with those calculated ab initio. The most stable conformer is stabilized by intramolecular hydrogen bonds N-H...O=C, N-H...pi (with the closest C-C bond in the aromatic ring), and a cis-COOH interaction. The other conformer exhibits a O-H...N hydrogen bond between the hydrogen atom of the hydroxyl group and the lone pair at the nitrogen atom.     

Determination of structural parameters for ferrocenecarboxaldehyde using Fourier transform microwave spectroscopy

Gas-phase structural parameters for ferrocenecarboxaldehyde have been determined using Fourier transform microwave spectroscopy. Rotational transitions due to a-, b-, and c-type dipole moments were measured. Eighteen rotational constants were determined by fitting the measured transitions of various isotopomers using a rigid rotor Hamiltonian with centrifugal distortion constants. Least-squares fit and Kraitchman analyses have been used to determine the gas-phase structural parameters and the atomic coordinates of the molecule using the rotational constants for various isotopomers. Structural parameters determined from the least-squares fit are the Fe-C bond lengths to the cyclopentadienyl rings, r(Fe-C)=2.047(4) A, and the distance between the carbon atoms of the cyclopentadienyl rings, r(C-C)=1.430(2) A and r(C1-C1')=1.46(1) A of ring carbon and aldehyde carbon atom. Structural parameters were also obtained using density-functional theory calculations, and these were quite helpful in resolving ambiguities in the structural fit analysis, and providing some fixed parameters for the structural analysis. The results of the least squares and the calculations indicate that the carbon atoms of the Cp groups for ferrocenecarboxaldehyde are in an eclipsed conformation in the ground vibrational state.     

Density functional theory study of the Fourier transform infrared and Raman spectra of Cu(II) bis-acetylacetone

Fourier transform infrared and Fourier transform Raman spectra of Cu(II) bis-acetylacetone have been obtained. The geometry, frequency and intensity of the vibrational bands of this compound and its 1,5-(13)C(2), 3-(13)C, 1,3,5-(13)C(3), 2,4-(13)C(2), (18)O(2) and 2,4-(13)C(2)-(18)O(2) derivatives were obtained by the density functional theory (DFT) with the B3LYP functional and using the 6-31G(*) and 3-21G(*) basis sets. The calculated frequencies are compared with the solid infrared and Raman spectra. All the measured infrared and Raman bands were interpreted in terms of the calculated vibrational modes. The percentage of deviation of the bond lengths and bond angles gives a good picture of the normal modes, and serves as a basis for the assignment of the wavenumbers. Most computed bands are predicted to be at higher wavenumbers than the experimental bands. The calculated geometrical parameters show slight differences compared with the experimental results. These differences can be explained by the different physical state of Cu(II) bis-acetylacetone. The DFT-B3LYP calculations assumed a free molecule in the gas phase. Analysis of the vibrational spectra indicates a strong coupling between the chelated ring modes.     

Shape of 4S- and 4R-hydroxyproline in gas phase

The alpha-amino acids 4(S)-hydroxyproline and 4(R)-hydroxyproline have been studied under isolation conditions in gas phase using laser-ablation molecular-beam Fourier transform microwave spectroscopy. Two conformers of each molecule have been detected in the jet-cooled rotational spectrum. The most stable conformer in both molecules exhibits an intramolecular N...H-O hydrogen bond (configuration 1) between the hydrogen atom of the carboxylic group and the nitrogen atom. The second conformer is characterized by an intramolecular N-H...O=C hydrogen bond (configuration 2). The conformers of 4(R)-hydroxyproline adopt a C(gamma)-exo puckering, while those of 4(S)-hydroxyproline present a C(gamma)-endo ring conformation. These ring conformations, which show the same propensity observed in collagen-like peptides, are stabilized by additional intramolecular hydrogen bonds involving the 4-hydroxyl group, with the exception of the most stable form of 4(S)-hydroxyproline for which a n-pi interaction between the oxygen atom of the 4-hydroxyl group and the carboxyl group carbon seems to be established. A gauche effect could be also contributing to stabilize the observed conformers.     

The microwave spectrum of the 1,1-difluoroprop-2-ynyl radical, F2*C-C[triple bond]CH

The rotational spectrum of the 1,1-difluoroprop-2-ynyl radical, F2*C-C[triple bond]CH, a partially fluorinated variant of the propargyl radical, has been recorded in the ground electronic, 2B1, state using pulsed discharge, pulsed-jet, Fabry-Perot Fourier transform microwave spectroscopy. Five successive a-type rotational transitions, from N = 1-0 to N = 5-4, and Ka = 0, 1, and 2, were measured between 6.5 and 32.5 GHz with an uncertainty of 5 kHz. The molecular constants, including fine and hyperfine constants, were precisely determined. These constants are compared with our predictions based on a density functional theory level ab initio calculations and with the fine and hyperfine constants of the propargyl radical. The measured electron spin densities suggest that both the difluoropropargyl and the difluoroallenyl resonance forms [F2*C-C[triple bond]CH<-->F2C=C=C*H] make major contributions to the electronic structure of the radical.     

Axial and equatorial hydrogen-bond conformers and ring-puckering motion in the trimethylene sulfide.hydrogen fluoride complex

Axial and equatorial hydrogen-bond conformers of the trimethylene sulfide.hydrogen fluoride complex have been generated and characterized in the supersonic jet of a molecular beam Fourier transform microwave experiment. It is shown that the ring-puckering large amplitude motion of trimethylene sulfide is responsible for the observed conformers. The axial conformer has been found to be the most stable and has been proved by the existence of relaxation of the high-energy equatorial form to it. This conformational preference has been explained in the context of a delicate balance between primary and secondary hydrogen bonds. The interconversion between both conformers takes place through the ring-puckering motion of the heterocycle, provided that the barrier to the ring inversion remains low after complexation, as all experimental findings indicate. The structural parameters of the trimethylene sulfide and the hydrogen bond have been derived from the analysis of the rotational spectra of the C(3)H(6) (32)S.HF, C(3)H(6) (34)S.HF, (13)C(alpha) (12)C(2)H(6) (32)S.HF, and (13)C(beta) (12)C(2)H(6) (32)S.HF isotopomers. Both conformers have C(s) symmetry with the hydrogen fluoride located in the molecular symmetry plane of trimethylene sulfide, which is puckered at a similar angle to that found for the bare ring.     

Microwave and theoretical investigation of the internal rotation in m-cresol

The microwave spectrum of m-cresol (3-methylphenol) has been investigated using a molecular beam Fourier transform microwave spectrometer in the frequency range from 3 to 26.5 GHz. The rotation of the hydroxy group into two different unequal energetic minima leads to different spectra for the syn- and anticonformers. Because of a high potential barrier both conformers can be analyzed independently. The methyl group is undergoing an almost free internal rotation which is only hindered by small barriers and splits the vibrational ground state in two states of internal rotation denoted as A and E species. The spacing between the species is found to be up to 10 GHz. The potential for the internal rotation can be determined from the spectra and analyzed in terms of the Fourier components V3 and V6. For syn-m-cresol these parameters were determined as V3=673(3) GHz and V6=-335(24) GHz and for anti-m-cresol V3=95(5) GHz and V6=-416(46) GHz. The barriers to internal rotation were furthermore calculated with second-order Moller-Plesset perturbation theory and second-order coupled-cluster singles- and-doubles model (CC2) in the electronic ground state and with CC2 in the first excited state. The CC2 method is found to be an appropriate method to calculate potential barriers in electronic excited states of such compounds.     

Microwave spectra and gas phase structural parameters for N-hydroxypyridine-2(1H)-thione

The microwave spectrum for N-hydroxypyridine-2(1H)-thione (pyrithione) was measured in the frequency range 6-18 GHz, providing accurate rotational constants and nitrogen quadrupole coupling strengths for three isotopologues, C(5)H(4)(32)S(14)NOH, C(5)H(4)(32)S(14)NOD, and C(5)H(4)(34)S(14)NOH. Pyrithione was found to be in a higher concentration in the gas phase than the other tautomer, 2-mercaptopyridine-N-oxide (MPO). Microwave spectroscopy is best suited to determine which structure predominates in the gas phase. The measured rotational constants were used to accurately determine the coordinates of the substituted atoms and provided sufficient data to determine some of the important structural parameters for pyrithione, the only tautomer observed in the present work. The spectra were obtained using a pulsed-beam Fourier transform microwave spectrometer, with sufficient resolution to allow accurate measurements of the (14)N nuclear quadrupole hyperfine interactions. Ab initio calculations provided structural parameters and quadrupole coupling strengths that are in very good agreement with measured values. The experimental rotational constants for the parent compound are A = 3212.10(1), B = 1609.328(7), and C = 1072.208(6) MHz, yielding the inertial defect Δ(0) = -0.023 amu·?(2) for the C(5)H(4)(32)S(14)NOH isotopologue. The observed near zero inertial defect clearly indicates a planar structure. The least-squares fit structural analysis yielded the experimental bond lengths R(O-H) = 0.93(2) ?, R(C-S) = 1.66(2) ?, and angle (N-O-H) = 105(4)° for the ground state structure.     

Targeting the Rich Conformational Landscape of N-Allylmethylamine Using Rotational Spectroscopy and Quantum Mechanical Calculations

The highly variable conformational landscape of N-allylmethylamine (AMA) was investigated using Fourier transform microwave spectroscopy aided by high-level theoretical calculations to understand the energy relationship governing the interconversion between nine stable conformers. Spectroscopically, transitions belonging to four low energy conformers were identified and their hyperfine patterns owing to the ¹⁴N quadrupolar nucleus were unambiguously resolved. The rotational spectrum of the global minimum geometry, conformer I, shows an additional splitting associated with a tunneling motion through an energy barrier interconnecting its enantiomeric forms. A two-step tunneling trajectory is proposed by finding transition state structures corresponding to the allyl torsion and NH inversion. Natural bond orbital and non-covalent interaction analyses reveal that an interplay between steric and hyperconjugative effects rules the conformational preferences of AMA.     

Structure, dipole moment and large amplitude motions of 1-benzofuran

The rotational spectrum of 1-benzofuran has been investigated by three different rotational spectroscopy techniques: (i) millimeterwave absorption free jet spectroscopy, useful for a fast assignment of the spectrum; (ii) molecular beam Fourier transform microwave spectroscopy, sensitive to detect less abundant isotopic species in natural abundance; (iii) waveguide conventional microwave spectroscopy, useful for the study of intramolecular dynamics, through the rotational spectra of the vibrational satellites of low energy modes. Besides the rotational spectrum of the ground state of the normal species, the spectra of 9 singly substituted 13C and 18O isotopomers in natural abundance, and of 6 vibrational satellites, have been measured. Precise structural parameters for the molecule, as well as information on the potential energy surface of the low energy vibrations, have been obtained. The dipole moment components have been determined to be micro(a)= 0.216 (2) and micro(b)= 0.720 (3) D, respectively.     

Structural and conformational properties and intramolecular hydrogen bonding of (methylenecyclopropyl)methanol, as studied by microwave spectroscopy and quantum chemical calculations

The microwave spectra of (methylenecyclopropyl)methanol (H(2)C=C(3)H(3)CH(2)OH) and one deuterated species (H(2)C=C(3)H(3)CH(2)OD) have been investigated in the 20-80 GHz spectral range. Accurate spectral measurements have been performed in the 40-80 GHz spectral interval. The spectra of two rotameric forms, denoted conformer I and conformer IX, have been assigned. Both these rotamers are stabilized by intramolecular hydrogen bonds formed between the hydrogen atom of the hydroxyl group and the pseudo-pi electrons on the outside of the cyclopropyl ring, the so-called "banana bonds". The carbon-carbon bond lengths in the ring are rather different. The bonds adjacent to the methylene group (H(2)C=) are approximately 7 pm shorter that the carbon-carbon bond opposite to this group. It is found from relative intensity measurements of microwave transitions that conformer IX, in which the hydrogen bond is formed with the banana bonds of the long carbon-carbon bond, is 0.4(3) kJ/mol more stable than conformer I, where the hydrogen bond is formed with the pseudo-pi electrons belonging to the shortest carbon-carbon bond of the ring. The microwave study has been augmented by quantum chemical calculations at the MP2/6-311++G, G3 and B3LYP/6-311++G levels of theory.     

An experimental and theoretical study of molecular structure and vibrational spectra of 2-chloronicotinic acid by density functional theory and ab initio Hartree–Fock calculations

In this work, the Fourier transform Raman and Fourier transform infrared spectra of 2-chloronicotinic acid (2-CNA) are recorded in the solid phase. The molecular geometry, vibrational frequencies, infrared intensities and Raman scattering activities of 2-CNA in ground state have been calculated by using ab initio Hartree–Fock (HF) and density functional (B3LYP and B3PW91) methods with 6-31G(d) and 6-311G(d) basis sets level. On the basis of the comparison between calculated and experimental results and the comparison with related molecule, assignments of fundamental vibrational modes are examined. The optimized geometric parameters (bond lengths and bond angles) obtained by using HF show the best agreement with the experimental values of 2-CNA. Comparison of the observed fundamental vibrational frequencies of 2-CNA and calculated results by density functional (B3LYP and B3PW91) and Hartree–Fock methods indicates that B3LYP is superior to the scaled Hartree–Fock and B3PW91 approach for molecular vibrational problems.     

Structural and conformational properties of 4-Pentyn-1-ol as studied by microwave spectroscopy and quantum chemical calculations

The microwave spectra of 4-pentyn-1-ol, HO(CH2)3C triple bond CH, and one deuterated species (DO(CH2)3C triple bond CH) have been investigated in a Stark spectrometer in the 17.5-80 GHz spectral region at about 0 degrees C, as well as in a pulsed-nozzle Fourier transform spectrometer in the 2.5-14 GHz range. A total of 14 spectroscopically different all-staggered rotameric forms are possible for this compound. It has previously been assumed that a conformer stabilized by intramolecular hydrogen bonding predominates in the gas phase, but the microwave spectrum of this rotamer was not assigned and it is concluded that this form is not present in high concentrations. However, the microwave spectrum indicates that several forms are present, two of which denoted ag+g+ and ag+a were assigned in this work. In these two forms, the H-O-C-C chains of atoms have an antiperiplanar conformation and the O-C-C-C links are synclinal ("gauche"). The C-C-C-C triple bond CH link is synclinal in ag+g+ but antiperiplanar in ag+a. The ag+g+ form is determined to be 1.5(6) kJ/mol more stable than ag+a by relative intensity measurements. The microwave study was augmented by quantum chemical calculations at the MP2/6-311++G** and G3 levels of theory. Both these quantum chemical procedures indicate that there are small energy differences between several rotametric forms, in agreement with the microwave findings. Both methods predict that ag+g+ is the global minimum.