Tracking chemical kinetics in high-throughput systems

Combinatorial chemistry and high‐throughput experimentation (HTE) have revolutionized the pharmaceutical industry—but can chemists truly repeat this success in the fields of catalysis and materials science? We propose to bridge the traditional “discovery” and “optimization” stages in HTE by enabling parallel kinetic analysis of an array of chemical reactions. We present here the theoretical basis to extract concentration profiles from reaction arrays and derive the optimal criteria to follow (pseudo)first‐order reactions in time in parallel systems. We use the information vector f and introduce in this context the information gain ratio, χ_r, to quantify the amount of useful information that can be obtained by measuring the extent of a specified reaction r in the array at any given time. Our method is general and independent of the analysis technique, but it is more effective if the analysis is performed on‐line. The feasibility of this new approach is demonstrated in the fast kinetic analysis of the carbon–sulfur coupling between 3‐chlorophenylhydrazonopropane dinitrile and β‐mercaptoethanol. The theory agrees well with the results obtained from 31 repeated C? S coupling experiments.     

Differential Behavior of Amino–Imino Constitutional Isomers in Nonlinear Optical Processes

A detailed study of the “blocked” amino–imino tautomers derived from N‐acridine‐substituted 2‐aminobenzothiazole—and their effect on the nonlinear optical response—is presented. The synthesis, characterization, and nonlinear optical properties of these frozen tautomers, namely, N‐methyl‐N‐(2‐nitroacridin‐6‐yl)‐2‐aminobenzothia‐zole and 3‐methyl‐N‐(7‐nitroacridin‐3‐yl)‐2‐iminobenzothiazole, are reported. A theoretical model based on valence–bond theory is also proposed and used to analyze the effects of the nuclear configuration corresponding to each frozen tautomer structure. In the present case, the aromatic form and the allylic‐anion‐like system of the ? N? C? N? group inherent to each isomer are crucial for understanding and analyzing the different responses of each “blocked” tautomer.     

Facile syntheses of 4‐vinyl‐1,2,3‐triazole monomers by click azide/acetylene coupling

Synthetic strategies for the preparation of a new family of vinyl monomers, 4‐vinyl‐1,2,3‐triazoles, have been developed. These monomers are noteworthy as they combine the stability and aromaticity of styrenics with the polarity of vinylpyridines and the structural versatility of acrylate/methacrylate derivatives. To enable the wide adoption of these unique monomers, new methodologies for their synthesis have been elaborated which rely on Cu‐catalyzed azide/acetylene cycloaddition reactions—“click chemistry”—as the key step, with the vinyl substituent being formed by either elimination or Wittig‐type reactions. In addition, one‐pot “click” reactions have been developed from alkyl halides, which allow for monomer synthesis without isolation of the intermediate organic azides. The high yield and facile nature of these procedures has allowed a library of new monomers including the parent compound, 1‐H‐4‐vinyl‐1,2,3‐triazole, to be prepared on large scales. © 2008 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem 46: 2897–2912, 2008     

Influence of phenylenediamine additions on the morphology and on the catalytic effect of polyaniline

The influence of para‐, ortho‐, and meta‐phenylenediamine (p‐, o‐, and m‐PDA) additions on the electrochemical synthesis of polyaniline has been investigated by the use of cyclic voltametry. It has been found that small additions (1 and 5 mmol L^?1) of PDA monomers influence significantly the polymerization rate. Whereas p‐PDA increases the polymerization rate, the addition of o‐ or m‐PDA slows it down. Therefore, a different number of potential cycling is necessary to obtain similar thickness of layers. The layers exhibit very different morphology, which changes from “spaghetti‐like” for polyaniline to “sponge‐like” for p‐PDA, to “pebble‐like” for o‐PDA and to “cauliflower‐like” for m‐PDA additions, respectively. The catalytic effect of the synthesized polymer layers has been tested. It has been found that all the layers exhibit catalytic effect in lowering the redox potential of hydroquinone/quinone tested reaction, but the rate of the electrocatalytic reaction varies depending on the PDA monomer added. © 2004 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem 42: 1599–1608, 2004     

New 3‐(Heteroaryl)‐2‐iminocoumarin‐based Borate Complexes: Synthesis,Photophysical Properties,and Rational Functionalization for Biosensing/Biolabeling Applications

Members of a series of boron difluoride complexes with 3‐(heteroaryl)‐2‐iminocoumarin ligands bearing both a phenolic hydroxyl group (acting as a fluorogenic center) and an N‐aryl substituent (acting as a stabilizing moiety) have been synthesized in good yields by applying a straightforward two‐step method. These novel fluorogenic dyes belong to the family of “Boricos” (D. Frath et al., Chem. Commun.­ 2013 , 49, 4908–4910) and are the first examples of phenol‐based fluorophores of which the photophysical properties in the green‐yellow spectral range are dramatically improved by N,N‐chelation of a boron atom. Modulation of their fluorescence properties through reversible chemical modification of their phenol moieties has been demonstrated by the preparation of the corresponding 2,4‐dinitrophenyl (DNP) ethers, which led to a dramatic “OFF‐ON” fluorescence response upon reaction with thiols. Additionally, to expand the scope of these “7‐hydroxy‐Borico” derivatives, particularly in biolabeling, amine or carboxylic acid functionalities amenable to (bio)conjugation have been introduced within their scaffold. Their utility has been demonstrated in the preparation of fluorescent bovine serum albumin (BSA) conjugates and “Borico”‐DOTA‐like scaffolds in an effort to design novel monomolecular multimodal fluorescence‐ radioisotope imaging agents.     

NMR Diffusion Measurements as a Simple Method to Examine Solvent–Solvent and Solvent–Solute Interactions in Mixtures of the Ionic Liquid [Bmim][N(SO2CF3)2] and Acetonitrile

The self‐diffusion coefficients of each component in mixtures of 1‐butyl‐3‐methylimidazolium bis(trifluoromethanesulfonyl)imide ([Bmim][N(SO₂CF₃)₂]) and acetonitrile were determined. The results suggest that the hydrodynamic boundary conditions change from “stick” to “slip” as the solvent composition transitions from “ionic liquid dissolved in acetonitrile” (χ_IL<0.4) to “acetonitrile dissolved in ionic liquid” (χ_IL>0.4). At higher χ_IL, the acetonitrile species are affected by “cage” and “jump” events, as the acetonitrile molecules reside nearer to the charged centre on the ions than in the “non‐polar” regions. The self‐diffusion coefficients of hexan‐1‐amine, dipropylamine, 1‐hexanol and dipropylether in mixtures of [Bmim][N(SO₂CF₃)₂] and acetonitrile were determined. In general, the nitrogen‐containing solutes were found to diffuse slower than the oxygen‐containing solutes; this indicates that there are greater ionic liquid–N interactions than ionic liquid–O interactions. This work demonstrates that the self‐diffusion coefficients of species can provide valuable information about solvent–solvent and solvent–solute interactions in mixtures containing an ionic liquid.     

Progress in Hyperpolarized Ultrafast 2D NMR Spectroscopy

An important development in the field of NMR spectroscopy has been the advent of hyperpolarization approaches, capable of yielding nuclear spin states whose value exceeds by orders‐of‐magnitude what even the highest‐field spectrometers can afford under Boltzmann equilibrium. Included among these methods is an ex situ dynamic nuclear polarization (DNP) approach, which yields liquid‐phase samples possessing spin polarizations of up to 50 %. Although capable of providing an NMR sensitivity equivalent to the averaging of about 1 000 000 scans, this methodology is constrained to extract its “superspectrum” within a single—or at most a few—transients. This makes it a poor starting point for conventional 2D NMR acquisition experiments, which require a large number of scans that are identical to one another except for the increment of a certain t₁ delay. It has been recently suggested that by merging this ex situ DNP approach with spatially encoded “ultrafast” methods, a suitable starting point could arise for the acquisition of 2D spectra on hyperpolarized liquids. Herein, we describe the experimental principles, potential features, and current limitations of such integration between the two methodologies. For a variety of small molecules, these new hyperpolarized ultrafast experiments can, for equivalent overall durations, provide heteronuclear correlation spectra at significantly lower concentrations than those currently achievable by conventional 2D NMR acquisitions. A variety of challenges still remain to be solved before bringing the full potential of this new integrated 2D NMR approach to fruition; these outstanding issues are discussed.     

Investigations of the reactivity of “kick‐started” oxetanes in photoinitiated cationic polymerization

The ability of certain alkyl substituted epoxides to accelerate the photoinitiated cationic ring‐opening polymerizations of oxetane monomers by substantially reducing or eliminating the induction period altogether has been termed by us “kick‐starting.” In this communication, the rates of photopolymerization of several model “kick‐started” oxetane systems were quantified and compared with the analogous biscycloaliphatic epoxide monomer, 3,4‐epoxycyclohexylmethyl 3′,4′‐epoxycyclohexanecarboxylate (ERL). It has been found that the “kick‐started” systems undergo photopolymerization at rates that are at least two‐fold faster than ERL. These results suggest that “kick‐started” oxetanes could replace ERL in many applications in which high speed ultraviolet induced crosslinking photopolymerizations are carried out. © 2014 Wiley Periodicals, Inc. J. Polym. Sci., Part A: Polym. Chem. 2015 , 53, 586–593     

A Density Functional Theory (DFT) Quantum‐Chemical Approach to the Real Structure of Poly(methylaluminoxane)

DFT quantum chemical calculations have been performed in order to optimize the geometric and electronic cage structure of poly(methylaluminoxane) (MAO) with oligomerization degree n = 9–15, and to find such structures that fit most closely the existing experimental data on the MAO composition and structure. The following peculiarities of the MAO structure were found: i) In “classic” MAO (n = 9, 12, 15; Al : CH₃ : O = 1 : 1 : 1), which has a triple‐layer cage structure, the inner layer contains highly reactive Al‐O bonds. ii) The reaction between “classic MAO” and trimethylaluminium (TMA) proceeds by the concerted mechanism, with the insertion of Al‐CH₃ groups into these Al‐O bonds producing “true” MAO (Al : CH₃ : O = 1 : 1.5 : 0.75). The calculated geometric and electronic structures of “true” MAO with n = 6, 9, 12 are presented. iii) “True” MAO and “classic” MAO exist in equilibrium. The driving force for the formation of “true” MAO is the decrease in enthalpy, and of “classic” MAO the increase in entropy, in the equilibrium reaction between “classic” MAO and TMA.     

A comparison between parallelization approaches in molecular dynamics simulations on GPUs

We test the relative performances of two different approaches to the computation of forces for molecular dynamics simulations on graphics processing units. A “vertex‐based” approach, where a computing thread is started per particle, is compared to an “edge‐based” approach, where a thread is started per each potentially non‐zero interaction. We find that the former is more efficient for systems with many simple interactions per particle while the latter is more efficient if the system has more complicated interactions or fewer of them. By comparing computation times on more and less recent graphics processing unit technology, we predict that, if the current trend of increasing the number of processing cores—as opposed to their computing power—remains, the “edge‐based” approach will gradually become the most efficient choice in an increasing number of cases. © 2014 Wiley Periodicals, Inc.     

Regioselectivity of 5, 6, 7, 8‐Tetrafluoroquinoline and 6‐X‐Trifluoroquinoline (X = CF3, H) in Reactions with Nucleophiles

A systematic study of the direction of nucleophilic attack of the nucleophiles Me₃MEMe₂ (M = Si, Sn; E = P, As), NaOMe, LiR (R = Me, nBu, Ph) and PhMgBr on 5, 6, 7, 8‐tetrafluoroquinoline ( 1 ), 6‐CF₃‐5, 7, 8‐trifluoroquinoline ( 2 ) and 5, 7, 8‐trifluoroquinoline ( 3 ) was performed with the aim to develop synthetic routes to specific functional derivatives and to gain a deeper insight into the mechanisms governing the regioselectivity. With the fairly “soft” nucleophiles Me₃MEMe₂ in general mixtures of 7‐Me₂EC‐(main product) and 6‐Me₂EC‐derivatives (side product) are formed (Schemes 1, 2, 4). Sulfuration of the isomer mixtures with E = P yields mixtures of the corresponding thiophosphano derivatives. The observed regioselectivity is explained by a concerted action of two factors: (i) The influence of the heteroatom N on the stabilization of the σ‐complex type transition states and (ii) the collective effect of four fluorine substituents favouring 6‐ and 7‐substitution. — The reaction of 1 with sodium methoxide (Scheme 3) was carried out to test the early conclusion on the exclusive formation of 7‐methoxy‐5, 6, 8‐trifluoroquinoline ( 14 ) [2], made on the basis of a GC‐analysis. For that purpose the molar ratio 1 : MeO^— was varied from 1 : 1.25 over 1 : 1 to 1 : 0.5. — In the reactions of the quinoline precursors 1 — 3 with the organometallic reagents LiR (R = Me, nBu, Ph) and PhMgBr (Scheme 5) products of the nucleophile‐addition at position 2 were obtained in high yields, which with hydrochloric acid led to 2‐R‐1, 2‐dihydro‐5, 6, 7, 8‐tetrafluoroquinolines. In contact with air or by reaction with MnO₂, oxidation to aromatic 2‐R‐5, 6, 7, 8‐tetrafluoroquinolines occurred. To rationalize the observed differences between the “soft” Me₃MEMe₂ and the “hard” carbon‐centred nucleophiles, two different hypothetic mechanisms are discussed. Since most of the compounds have been obtained in reaction mixtures, the assignment to structural formulae is mainly based on GCMS and CMS analyses together with ¹H‐, ¹⁹F‐ and ³¹P NMR data and comparison with literature information and with spectra registered for individual compounds. In addition, the molecular structures of the representatives 6 , 20 and 29 , determined by X‐ray analyses, prove the structural formulae deduced from the spectra of products.     

Is Cyclopropane Really the σ‐Aromatic Paradigm?

Dewar proposed the σ‐aromaticity concept to explain the seemingly anomalous energetic and magnetic behavior of cyclopropane in 1979. While a detailed, but indirect energetic evaluation in 1986 raised doubts—“There is no need to involve ‘σ‐aromaticity’,”—other analyses, also indirect, resulted in wide‐ranging estimates of the σ‐aromatic stabilization energy. Moreover, the aromatic character of “in‐plane”, “double”, and cyclically delocalized σ‐electron systems now seems well established in many types of molecules. Nevertheless, the most recent analysis of the magnetic properties of cyclopropane (S. Pelloni, P. Lazzeretti, R. Zanasi, J. Phys. Chem. A 2007 , 111, 8163–8169) challenged the existence of an induced σ‐ring current, and provided alternative explanations for the abnormal magnetic behavior. Likewise, the present study, which evaluates the σ‐aromatic stabilization of cyclopropane directly for the first time, fails to find evidence for a significant energetic effect. According to ab initio valence bond (VB) computations at the VBSCF/cc‐PVTZ level, the σ‐aromatic stabilization energy of cyclopropane is, at most, 3.5 kcal mol^?1 relative to propane, and is close to zero when n‐butane is used as reference. Trisilacyclopropane also has very little σ‐aromatic stabilization, compared to Si₃H₈ (6.3 kcal mol^?1) and Si₄H₁₀ (4.2 kcal mol^?1). Alternative interpretations of the energetic behavior of cyclopropane (and of cyclobutane, as well as their silicon counterparts) are supported.     

Electronic Tuning of a Carbene Center via Remote Chemical Induction,and Relevant Effects in Catalysis

The present report develops the idea that an N‐heterocyclic carbene incorporating a remote anionic functionality—here, a malonate group—as a backbone component of its heterocyclic framework, can be “post‐functionalized” directly from its transition‐metal complexes, upon simple addition of a variety of electrophiles interacting directly with the malonate group in the outer coordination sphere. From a palette of selected electrophilic reagents, it was thus possible to modulate the electronic donor properties of the carbene center over a rather broad range. Both the zwitterionic complex [Rh{malo‐NHC}(cod)] and the cationic derivatives [Rh{malo‐NHC^E}(cod)]⁺ (where “malo‐NHC^E” represents the ligand modified by a selected electrophile “E”) were used as pre‐catalysts in two types of catalytic reactions, namely, the polymerization of phenylacetylene and the hydroboration of styrene. The results indicate that, in both cases, the zwitterionic species is by far the best catalyst, whereas a decrease in the ligand donicity induced by the added electrophile results in a concomitant reduction of catalytic activity. Apparent deviations to such a trend in the case of the hydroboration of styrene were rationalized in terms of an interaction between the reactive catecholborane substrate and the remote functionality of the N‐heterocyclic carbene leading to an in situ modification of the nature of the active species. These observations serve as a useful basis to define the scope and limitations of the present conceptual approach in catalysis.     

Single‐Layered Ultrasmall Nanoplates of MoS2 Embedded in Carbon Nanofibers with Excellent Electrochemical Performance for Lithium and Sodium Storage

The preparation and electrochemical storage behavior of MoS₂ nanodots—more precisely single‐layered ultrasmall nanoplates—embedded in carbon nanowires has been studied. The preparation is achieved by an electrospinning process that can be easily scaled up. The rate performance and cycling stability of both lithium and sodium storage were found to be outstanding. The storage behavior is, moreover, highly exciting from a fundamental point of view, as the differences between the usual storage modes—insertion, conversion, interfacial storage—are beneficially blurred. The restriction to ultrasmall reaction domains allows for an almost diffusion‐less and nucleation‐free “conversion”, thereby resulting in a high capacity and a remarkable cycling performance.     

Broadening the Scope for Fluoride‐Free Synthesis of Siliceous Zeolites

Siliceous zeolites are ideally suited for emerging applications in gas separations, sensors, and the next generation of low‐k dielectric materials, but the use of fluoride in the synthesis significantly hinders their commercialization. Herein, we show that the dry gel conversion (DGC) technique can overcome this problem. Fluoride‐free synthesis of two siliceous zeolites—AMH‐4 (CHA‐type) and AMH‐5 (STT‐type), has been achieved for the first time using the method. Siliceous *BEA‐, MFI‐, and *MRE‐type zeolites have also been synthesized to obtain insights into the crystallization process. Charge‐balancing interactions between the inorganic cation, organic structure‐directing agent (OSDA), and Si?O^? defects are found to be an essential aspect. We quantify this factor in terms of the “OSDA charge/silica ratio” of the as‐made zeolites and demonstrate that the DGC technique is broadly applicable and opens up new avenues for fluoride‐free siliceous zeolite synthesis.     

Activation of the hippocampal AC‐cAMP‐PKA‐CREB‐BDNF signaling pathway using WTKYR in depression model rats

Depression, also called “depression disorder,” is characterized by a significant and persistent low mood. It has become a major refractory disease in the 21st century. In recent years, Chinese medicine has shown some important clinical value in the treatment of depression. Among them, the Warming and “Tonifying” Kidney‐Yang Recipe (WTKYR) has been demonstrated to have obvious effects in the clinical treatments of depression; however, the mechanism remains unclear. This study is based on the adenylyl cyclase (AC)—cyclic adenosine monophosphate (cAMP)—protein kinase A (PKA)—cAMP response element‐binding protein (CREB)—brain derived neurotrophic factor (BDNF) signaling pathway, aiming to investigate the mechanism of WTKYR. The results showed that WTKYR can upregulate AC‐cAMP‐PKA‐CREB‐BDNF in the hippocampus of depression model rats and alleviate its depressive symptoms, which may be the mechanism of WTKYR.     

Discrimination of isomeric structures using information theoretic topological indices

Three newly defined information theoretic topological indices, namely “degree complexity (I^d),” “graph vertex complexity (H^V),” and “graph distance complexity (H^D)” along with three other information indices have been used to study their discriminating power of 45 trees and 19 monocyclic graphs. It is found that the newly defined indices have satisfactory discriminating power while H^D has been found to be the only index to discriminate all the graphs studied.     

Arylation with Unsymmetrical Diaryliodonium Salts: A Chemoselectivity Study

Phenols, anilines, and malonates have been arylated under metal‐free conditions with twelve aryl(phenyl)iodonium salts in a systematic chemoselectivity study. A new “anti‐ortho effect” has been identified in the arylation of malonates. Several “dummy groups” have been found that give complete chemoselectivity in the transfer of the phenyl moiety, irrespective of the nucleophile. An aryl exchange in the diaryliodonium salts has been observed under certain arylation conditions. DFT calculations have been performed to investigate the reaction mechanism and to elucidate the origins of the observed selectivities. These results are expected to facilitate the design of chiral diaryliodonium salts and the development of catalytic arylation reactions that are based on these sustainable and metal‐free reagents.     

Synthetically Important Alkali‐Metal Utility Amides: Lithium,Sodium, and Potassium Hexamethyldisilazides,Diisopropylamides, and Tetramethylpiperidides

Most synthetic chemists will have at some point utilized a sterically demanding secondary amide (R₂N^?). The three most important examples, lithium 1,1,1,3,3,3‐hexamethyldisilazide (LiHMDS), lithium diisopropylamide (LiDA), and lithium 2,2,6,6‐tetramethylpiperidide (LiTMP)—the “utility amides”—have long been indispensible particularly for lithiation (Li‐H exchange) reactions. Like organolithium compounds, they exhibit aggregation phenomena and strong Lewis acidity, and thus appear in distinct forms depending on the solvents employed. The structural chemistry of these compounds as well as their sodium and potassium congeners are described in the absence or in the presence of the most synthetically significant donor solvents tetrahydrofuran (THF) and N,N,N’,N’‐tetramethylethylenediamine (TMEDA) or closely related solvents. Examples of hetero‐alkali‐metal amides, an increasingly important composition because of the recent escalation of interest in mixed‐metal synergic effects, are also included.