Spectroscopy: the study of DNA cleavage by newly synthesized polydentate macrocyclic ligand and its copper(II) complexes

A novel hexadentate nitrogen donor [N6] macrocyclic ligand, i.e. 2,6,12,16,21,22-hexaaza-3,5,13,15-tetramethyl-4,14-diethyl-tricyclo-[15.3.1.1(7-11)]docosane-1(21),2,5,7(22),8,10,12,15,17,19-decaene (L), has been synthesized. Copper(II) complexes with this ligand have been prepared and subjected to elemental analyses, molar conductance measurements, magnetic susceptibility measurements, mass, 1H NMR (ligand), IR, electronic, and EPR spectral studies. On the basis of molar conductance the complexes may be formulated as [Cu(L)X2] [X = Cl(-), Br(-), NO3(-) and CH3COO(-)] due to their nonelectrolytic nature in N,N'-dimethylformamide (DMF). All the complexes are of the high spin type and are six coordinated. On the basis of IR, electronic and EPR spectral studies tetragonal geometry has been assigned to the Cu(II) complexes. The interaction of these complexes with calf thymus DNA has been explored by using absorption, emission, viscosity measurements, electrochemical studies and DNA cleavage. All the experimental results suggest that the complexes bind to DNA and also promote the cleavage plasmid pBR 322, in the presence of H2O2 and ascorbic acid.     

Dinuclear cobalt(II) and copper(II) complexes with a Py2N4S2 macrocyclic ligand

The interaction between Co(II) and Cu(II) ions with a Py(2)N(4)S(2)-coordinating octadentate macrocyclic ligand (L) to afford dinuclear compounds has been investigated. The complexes were characterized by microanalysis, conductivity measurements, IR spectroscopy and liquid secondary ion mass spectrometry. The crystal structure of the compounds [H(4)L](NO(3))(4), [Cu(2)LCl(2)](NO(3))(2) (5), [Cu(2)L(NO(3))(2)](NO(3))(2) (6), and [Cu(2)L(μ-OH)](ClO(4))(3)·H(2)O (7) was also determined by single-crystal X-ray diffraction. The [H(4)L](4+) cation crystal structure presents two different conformations, planar and step, with intermolecular face-to-face π,π-stacking interactions between the pyridinic rings. Complexes 5 and 6 show the metal ions in a slightly distorted square-pyramidal coordination geometry. In the case of complex 7, the crystal structure presents the two metal ions joined by a μ-hydroxo bridge and the Cu(II) centers in a slightly distorted square plane or a tetragonally distorted octahedral geometry, taking into account weak interactions in axial positions. Electron paramagnetic resonance spectroscopy is in accordance with the dinuclear nature of the complexes, with an octahedral environment for the cobalt(II) compounds and square-pyramidal or tetragonally elongated octahedral geometries for the copper(II) compounds. The magnetic behavior is consistent with the existence of antiferromagnetic interactions between the ions for cobalt(II) and copper(II) complexes, while for the Co(II) ones, this behavior could also be explained by spin-orbit coupling.     

Trigonal bi- and monopyramidal cobalt(II) complexes of a novel guanidine-based tripodal ligand

The novel ligand DIG(3)tren has three N',N'-diisopropylguanidinyl (DIG) moieties. We report on the structures of two cobalt complexes that show how an isopropylamino group from each DIG acts as a flap that can either close over the metal or rotate away from the metal to open up a site for auxiliary ligand binding. Two of the -NH(iPr) flaps are open in pink [Co(DIG(3)tren)(OAc)]OAc (1), and each of these flaps provides a hydrogen bond to stabilize acetate binding to trigonal bipyrimidal cobalt. The flaps are closed in blue [Co(DIG(3)tren)][BPh(4)](2) (2), yielding a rare example of a trigonal (mono)pyramidal [ML](2+) ion.     

Synthesis and characterization of a new fluorene ligand and its complexes with cobalt(II), copper(II), and ruthenium(II)

A new fluorene ligand, benzo[15-crown-5]-5H-pyrido[3′,2′:4,5]cylopenta[1,2-b]pyridin-5-ylidenehydrazone (bph), has been synthesized from the reaction of 4,5-diazafluoren-9-one with 4′-formylbenzo-15-crown-5. The Co(II), Cu(II), and Ru(II) complexes of the ligand were prepared and characterized. The metal-to-ligand ratio of the Co(II) and Cu(II) complexes was found to be 2:1 and that of the Ru(II) complex was found to be 1:1. The ligand and complexes have been characterized by FTIR, UV–visible, ¹H NMR and fluorescence spectra, as well as elemental analyses and mass spectra.     

Structural studies and anticancer activity of a novel (N6O4) macrocyclic ligand and its Cu(II) complexes

A novel (N6O4) macrocyclic ligand (L) and its Cu(II) complexes have been prepared and characterized by elemental analysis, spectral, thermal (TG/DTG), magnetic, and conductivity measurements. Quantum chemical calculations have also been carried out at B3LYP/6-31+G(d,p) to study the structure of the ligand and one of its complexes. The results show a novel macrocyclic ligand with potential amide oxygen atom, amide and amine nitrogen atoms available for coordination. Distorted square pyramidal ([Cu(L)Cl]Cl·2.5H2O (1), [Cu(L)NO3]NO(3)·3.5H2O (2), and [Cu(L)Br]Br·3H2O (4) and octahedral ([Cu(L)(OAc)2]·5H2O (3)) geometries were proposed. The EPR data of 1, 2, and 4 indicate d1x2(-y)2 ground state of Cu(II) ion with a considerable exchange interaction. The measured cytotoxicity for L and its complexes (1, 2) against three tumor cell lines showed that coordination improves the antitumor activity of the ligand; IC50 for breast cancer cells are ≈8.5, 3, and 4 μg/mL for L and complexes (1) and (2), respectively.     

Spectroscopic characterization of tetradentate macrocyclic ligand: its transition metal complexes

Manganese(II), cobalt(II), nickel(II) and copper(II) complexes are synthesized with a novel tetradentate ligand viz. 1,3,9,11-tetraaza-4,8,12,16-tetraoxo-2,6,10,14-tetrathiacyclohexadecane (L) and characterized by the elemental analysis, molar conductance measurements, magnetic susceptibility measurements, electron impact mass, 1H NMR, IR, electronic and EPR spectral studies. The molar conductance measurements of the complexes in DMSO correspond to be nonelectrolytic nature for Mn(II), Co(II) and Cu(II) while 1:2 electrolytes for Ni(II) complexes. Thus these complexes may be formulated as [M(L)X2] and [Ni(L)]X2 (where M: Mn(II), Co(II), and Cu(II) and X = Cl- and NO3-). On the basis of IR, electronic and EPR spectral studies an octahedral geometry has been assigned for Mn(II) and Co(II) complexes, square-planar for Ni(II) whereas tetragonal for Cu(II) complexes. The ligand and its complexes were also evaluated against the growth of bacteria and pathogenic fungi in vitro.     

Mn(II), Co(II), Ni(II) and Cu(II) complexes of a tertraaza macrocyclic ligand: Synthesis, characterization and biological screening

Manganese(II), cobalt(II), nickel(II) and copper(II) complexes with 1,5,11,15-tetraaza-21,22-dioxo-tricyclo [19,3,1,I^6,10]-5,10,15-20-dicosatetraene (L), as a new macrocyclicligand, have been synthesized with and characterized by elemental analysis, molar conductance measurements, magnetic susceptibility measurements, mass, IR, electronic and EPR spectral studies. The molar conductance measurements of the complexes in DMF correspond to non-electrolytic nature of Mn(II), Co(II) and Cu(II) complexes, while showing a 1:2 electrolyte for thew Ni(II) complexe. Thus, these complexes may be formulated as [M(L)X₂] and [Ni(L)]X₂ (where M = Mn(II), Co(II) and Cu(II) and X = Cl^- and NO₃ ^-). On the basis of IR, electronic and EPR spectral studies, an octahedral geometry has been assigned for Mn(II) and Co(II), a square planar for Ni(II) and tetragonal for Cu(II) complexes. In vitro ligand and its metal complexes were also screened against the growth of some fungal and bacterial species in order to assess their antimicrobial properties.     

Manganese(II) and palladium(II) complexes containing a new macrocyclic Schiff base ligand: antibacterial properties

Complexes of tetradentate macrocyclic Schiff base ligand, L, with Mn^II and Pd^II ions have been synthesized by the template condensation of 1,10-phenanthroline-2, 9-dicarboxaldehyde, 2,3-diamino-1,4-naphthoquinone and 1,2-dibromoethane in EtOH. The complexes were characterized by physicochemical and spectroscopic methods and an octahedral geometry is suggested for their structure. They have been screened for antibacterial activity against several bacteria, and the results are compared with the activity of penicillin.     

Synthesis and characterization of cobalt(II) complexes with tripodal polypyridine ligand bearing pivalamide groups. Selective formation of six- and seven-coordinate cobalt(II) complexes

The reactions of CoX(2) (X = Cl(-), Br(-), I(-) and ClO(4)(-)) with the tripodal polypyridine N(4)O(2)-type ligand bearing pivalamide groups, bis(6-(pivalamide-2-pyridyl)methyl)(2-pyridylmethyl)amine ligand (H(2)BPPA), afforded two types of Co(II) complexes as follows. One type is purple-coloured Co(II) complexes, [CoCl(2)(H(2)BPPA)] (1(Cl)) and [CoBr(2)(H(2)BPPA)] (1(Br)) which were prepared when X = Cl(-) and Br(-), respectively. The other type is pale pink-coloured Co(II) complexes, [Co(MeOH)(H(2)BPPA)](ClO(4)(-))(2) (2·(ClO(4)(-))(2)) and [Co(MeCN)(H(2)BPPA)](I(-))(2) (2·(I(-))(2)), which were obtained when X = I(-) and ClO(4)(-), respectively. From the reaction of 1(Cl) and NaN(3), a purple-coloured complex, [Co(N(3))(2)(H(2)BPPA)] (1(azide)), was obtained. These Co(II) complexes were characterized by X-ray structural analysis, IR and reflectance spectroscopies, and magnetic susceptibility measurements. All these Co(II) complexes were shown to be in a d(7) high-spin state based on magnetic susceptibility measurements. The former Co(II) complexes revealed a six-coordinate octahedron with one amine nitrogen, three pyridyl nitrogens, and two counter anions, and one coordinated anion, Cl(-), Br(-) and N(3)(-), forming intramolecular hydrogen bonds with two pivalamide N-H groups. On the other hand, the latter Co(II) complexes showed a seven-coordinate face-capped octahedron with one amine nitrogen, three pyridyl nitrogens, two pivalamide carbonyl oxygens and MeCN or MeOH. In these structures, intramolecular hydrogen bonding interaction was not observed, and the metal ion was coordinated by the pivalamide carbonyl oxygens and solvent molecule instead of the counter anions. The difference in coordination geometries might be attributable to the coordination ability and ionic radii of the counteranions; smaller strongly binding anions such as Cl(-), Br(-) and N(3)(-) gave the former complexes, whereas bulky weakly binding anions such as I(-) and ClO(4)(-) afforded the latter ones. In order to demonstrate this hypothesis, the small stronger coordinating ligand, azide, was added to complexes 2·(ClO(4)(-))(2) to obtain the dinuclear cobalt(II) complex in which two six-coordinate octahedral cobalt(II) species were bridged with azide, 3·(ClO(4)(-)). Also, the abstraction reaction of halogen anions from complexes 1(Cl) by AgSbF(6) gave a pale pink Co(II) complex assignable to 2·(SbF(6)(-))(2).     

Mixed ligand cobalt(II) picolinate complexes: synthesis, characterization, DNA binding and photocleavage

Complexes of the type [Co(pic)(2)(NN)], where pic = picolinate, NN = dipyrido[3,2-d:2',3'-f]quinoxaline (dpq) (4) and 4b,5,7,7a-tetrahydro-4b,7a-epiminomethanoimino-6H-imidazo[4,5-f][1,10]-phenanthroline-6,13-dione (bipyridyl-glycoluril) (bpg) (6) have been synthesized and characterized by elemental analysis, IR, UV-vis, NMR and ESI-MS spectroscopy and thermogravimetic analysis (TGA). Their physicochemical properties are compared with previously synthesized complexes, where NN = (H(2)O)(2) (1), 2,2'-bipyridine (bpy) (2), 1,10-phenanthroline (phen) (3) and dipyrido[3,2-a:2',3'-c]phenazine (dppz) (5). The crystal structures of the complexes 4-6 were solved by single-crystal X-ray diffraction. The complexes 4 and 5 crystallize from a mixture of chloroform and methanol in monoclinic and orthorhombic crystal systems, respectively, whereas complex 6 crystallizes from dimethyl sulfoxide (DMSO) in a tetragonal crystal system. The coordination sphere consists of two oxygen atoms and two nitrogen atoms from the two picolinates and two nitrogen atoms from the dpq, dppz or bpg ligand, respectively. Co(ii)/Co(iii) oxidation potentials have been determined by cyclic voltammetry. The DNA binding of complexes 1-5 has been investigated using thermal melting, fluorescence quenching and viscosity measurements, which indicate the partial intercalation of complex 5 with an apparent binding constant (k(app)) of 8.3 × 10(5) M(-1). DNA cleavage studies of complexes 1-5 have been investigated using gel electrophoresis in the presence of H(2)O(2) as an oxidizing agent and also by photoirradiation at 365 nm. The mechanistic investigations suggest that singlet oxygen ((1)O(2)) is the major species involved in the DNA cleavage by these complexes. The structures of complexes 2-6 were optimized with density functional theory (DFT) method (B3LYP/6-31G(d,p)). The low vertical ionization potential values indicate photoredox pathways for the DNA cleavage activity by complexes 4 and 5, which is corroborated by DNA cleavage experiments.     

Synthesis, characterization and butadiene polymerization studies of cobalt(II) complexes bearing bisiminopyridine ligand

A series of 2,6-bis(imino)pyridyl Co(II) complexes of the general formulas [2,6-(ArNCMe)₂C₅H₃N]CoCl₂ (Ar = -C₆H₅, 3a; 2-MeC₆H₄, 3b; 2-EtC₆H₄, 3c; 2-ⁱPrC₆H₄, 3d; 2,6-ⁱPr₂C₆H₃, 3e; 4-ⁱPrC₆H₄, 3f; 4-FC₆H₄, 3g; 4-CF₃C₆H₄, 3h; 2-FC₆H₄, 3i; 2,6-F₂C₆H₃, 3j; 2-Me-4-FC₆H₃, 3k and 2,6-Me₂-4-FC₆H₂, 3l) and [2,6-(ArNCH)₂C₅H₃N]CoCl₂ (Ar = -C₆H₅, 3m; 2-EtC₆H₄, 3n and 4-ⁱPrC₆H₄, 3o) have been synthesized and characterized. The structures of new complexes 3a, 3f-3h and 3m-3o are further confirmed by X-ray crystallography. All complexes adopt distorted trigonal bipyramidal configuration with the equatorial plane formed by the pyridyl nitrogen atoms and the two chlorine atoms. In the complexes 3m and 3o, three aromatic rings are essentially coplanar, which is in sharp contrast to the other complexes, where three rings are almost orthogonal to each other. With methylaluminoxane (MAO) as cocatalyst in toluene at room temperature, the complexes show moderate to high conversion (42-99%) in butadiene polymerization, producing polybutadiene with tunable cis-1,4 structure (77.5-97%) and controllable molecular weight and molecular weight distribution. The catalytic activity, selectivity as well as the molecular weight and molecular weight distribution of the resultant polymer are found to be dependent on the size and nature of substituents on iminoaryl rings and their positions located. By deliberately tuning the ligand structure, more efficient catalyst in terms of high activity and high selectivity can be obtained.     

Synthesis and characterization of copper(II), nickel(II) and cobalt(II) complexes with novel thiourea derivatives

A novel series of thiourea derivatives, namely, N,N-diphenyl-N-(4-phenyl-benzoyl)thiourea (HL¹), N,N-diphenyl-N-(4-chloro-benzoyl)thiourea (HL²) and N,N-di-n-propyl-N-(4-chloro-benzoyl)thiourea (HL³), and its metal complexes has been prepared and characterised by elemental analysis, i.r. spectroscopy, ¹H-n.m.r. spectroscopy, mass spectrometry and single crystal X-ray diffraction. The ligand coordinates to Ni^II, Cu^II and Co^II in a bidentate manner yielding essentially neutral complexes of the type cis-[ML₂]. N.m.r. spectra and single crystal X-ray diffraction analysis revealed the presence of a distorted tetrahedral coordination ML₂ complex.     

Kinetics and mechanism of ligand substitution in binuclear nickel(II) and cobalt(II) complexes

The kinetics and mechanism of the removal of M²⁺ from bis-(heptane-2,4,6-trionato)M(II) [M = Ni, Co] by ethylenediminetetraacetic acid (EDTA), nitrilotriacetic acid (NAT), 1,2-cyclohexanediamine-N, N, N′, N′-tetraacetic acid (C_yDTA), and ethylenebis(oxyethylenenitrilo)tetraacetic acid (EGTA) have been investigated using stopped-flow spectrophotometry in methanol-water at 25°C and ionic strength 0.1 mol dm^?3 KNO₃. The reactions were investigated at a number of different pHs. An associative mechanism is proposed to account for the kinetic data. Although all the ligands have similar functional groups, their reactivity towards the parent complex is quite different. The pH dependence of the rate constants has been used to determine the relative reactivities of the various ligand species present. In the case of nitrilotriacetic acid, a nonlinear dependence on ligand concentration is observed, thus confirming the mechanism proposed. © 1995 John Wiley & Sons, Inc.     

The preparation and electrochemistry of manganese(II) complexes of an unsaturated pentadentate macrocyclic ligand

The preparation of a series of six and seven coordinate manganese(II) complexes [Mn^(II)(L)X]⁺, and [Mn^(II)(L)X₂]^2? (X = halide, water, triphenylphosphine oxide, imidazole, 1-methyl imidazole and pyridine) incorporating the pentadentate planar macrocylic ligand L is described. Cyclic voltammetry of these complexes in acetonitrile each shows a reversible one-electron reduction wave near - 1.4 V vs a Ag/AgNO₃ reference electrode. Quantitative reduction of these complexes by controlled potential electrolysis at a platinum gauze at - 1.4 V yields the corresponding one-electron reduction products which have been shown by ESR spectroscopy to be manganese(II)-ligand radical species, the electron being thought to reside on the di-imino pyridine moiety of the macrocyclic ligand. No metal reduced species could be isolated even in the presence of π-acceptor ligands such as CO or phosphines.     

Synthesis and characterization of five-coordinate macrocyclic complexes of nickel(II) and copper(II)

The template condensation of the ligand 1,29,10-tetraphenyl-3,4,7,8-tetraazonona-2,4,6,8-tetraen-1,10-dione and aliphatic diamines like ethanediamine and 1,2-propanediamine in the presence of metal ions, viz. Ni²⁺ and Cu²⁺, resulted in the formation of pentacoordinate square pyramidal complexes with the hydroxyl ion occupying the axial position. The macrocyclic ligand is coordinated to the central metal ion through four imine nitrogen atoms in a planar fashion. Electronic, IR and ESR spectra as well as magnetic and conductance data corrobarate the above proposition. The electrochemistry of these complexes in DMF has also been discussed.