A full dimensional grid empowered simulation of the CO2 + CO2 processes

A recently introduced bond–bond formulation of the intermolecular interaction has been extended to six‐atom systems to the end of assembling a new potential energy surface (PES) and has been incorporated into a grid empowered simulator able to handle the modeling of the CO₂ + CO₂ processes. The proposed PES is full dimensional and accounts for the dependence of the intermolecular interaction on some basic physical properties of the colliding partners, including modulations induced by the monomer deformation. The used analytical formulation of the interaction involves a limited number of parameters, each having a clear physical meaning. Guess values for these parameters can also be obtained from analytical correlation formulae. Such estimates can then be fine tuned by exploiting experimental and theoretical information. The resulting PES well describes stretched and bent asymptotic CO₂ monomers as well as the CO₂–CO₂ interaction in the most and less stable configurations. On this potential massive quasiclassical elastic and inelastic detailed scattering trajectories have been integrated, by exploiting the innovative computational technologies of the grid. The efficiency of the approach used and the reliability of the estimates of the dynamical properties obtained in this way is such that we can now plan a systematic evaluation of the state specific rate coefficient matrix elements needed for space craft reentry modeling. Here, we present probabilities and cross sections useful to rationalize some typical mechanisms characterizing the vibrational transitions of the CO₂ + CO₂ system on the flexible monomer proposed PES. On such PES, the key dynamical outcomes are: (a) there is a strong energy interchange between symmetric stretching of the reactants and bending of the products (and viceversa) while asymmetric stretching is strongly adiabatic (b) reactant energy is more efficiently allocated (with respect to the rigid monomers PES) as product vibration when reactant stretching modes are excited while the contrary is true when the reactant bending mode is excited. © 2012 Wiley Periodicals, Inc.     

A New Glimpse into the CO2‐Philicity of Carbonyl Compounds

We report a theoretical study on non‐conventional structures of 1:1 complexes between carbon dioxide and carbonyl compounds. These structures have never been reported before but are relevant for understanding the solubility of carbonyl compounds in supercritical CO₂. The work is based on the results of ab initio calculations at the MP2 and CCSD(T) levels using aug‐cc‐pVDZ and aug‐cc‐pVTZ basis sets. Investigated systems include aldehydes, ketones and esters, together with some fluorinated derivatives. The results are interpreted in terms of natural bond orbital analyses. Harmonic vibrational frequency calculations have also been done in order to compare them with available experimental data. We show for the first time that complexes where CO₂ behaves globally as a Lewis base are stable in the case of ketones and esters, but not in the case of aldehydes, and their stability is similar to that of traditional complexes in which CO₂ behaves as a Lewis acid. This finding considerably modifies the concept of CO₂‐philicity and may have important ramifications in the development of green reactions in supercritical CO₂.     

A DFT/TDDFT Investigation of Excited State Dynamical Mechanism of (E)‐1‐((2,2‐Diphenylhydrazono)methyl)naphthalen‐2‐ol

The excited‐state intramolecular proton transfer (ESIPT) mechanism of a new compound (E )‐1‐((2,2‐diphenylhydrazono)methyl)naphthalen‐2‐ol ( EDMN ) sensor, reported and synthesized by Mukherjee et al . [Sensors Actuat. B‐Chem . 2014, 202 , 1190], is investigated in detail theoretically. The calculations on primary bond lengths, bond angles, and the corresponding infrared (IR) vibrational spectra and hydrogen‐bond energy involved in intramolecular hydrogen bond between the S₀ and S₁ states confirm that the intramolecular hydrogen bond is strengthened in the S₁ state, which reveals the tendency of ESIPT reaction. The fact that the experimental absorption and emission spectra are well reproduced demonstrates the rationality and effectiveness of the time‐dependent density functional theory (TDDFT) level of theory we adopt here. Furthermore, intramolecular charge transfer based on the frontier molecular orbitals (MOs) gives indication of the ESIPT reaction. The constructed potential energy curves of both the S₀ and S₁ states while keeping the O─H distance of EDMN fixed at a series of values are used to illustrate the ESIPT process. The lower barrier of ~3.934 kcal/mol in the S₁ state potential energy curve (lower than the 8.254 kcal/mol in the S₀ state) provides the transfer mechanism.     

DNA Photosensitization by an “Insider”: Photophysics and Triplet Energy Transfer of 5‐Methyl‐2‐pyrimidone Deoxyribonucleoside

The main chromophore of (6‐4) photoproducts, namely, 5‐methyl‐2‐pyrimidone (Pyo), is an artificial noncanonical nucleobase. This chromophore has recently been reported as a potential photosensitizer that induces triplet damage in thymine DNA. In this study, we investigate the spectroscopic properties of the Pyo unit embedded in DNA by means of explicit solvent molecular‐dynamics simulations coupled to time‐dependent DFT and quantum‐mechanics/molecular‐mechanics techniques. Triplet‐state transfer from the Pyo to the thymine unit was monitored in B‐DNA by probing the propensity of this photoactive pyrimidine analogue to induce a Dexter‐type triplet photosensitization and subsequent DNA damage.     

Supramolecular hydrogen‐bonding patterns in two cocrystals of the N(7)–H tautomeric form of N6‐benzoyladenine: N6‐benzoyladenine–3‐hydroxypyridinium‐2‐carboxylate (1/1) and N6‐benzoyladenine–DL‐tartaric acid (1/1)

Two novel cocrystals of the N(7)—H tautomeric form of N⁶‐benzoyladenine (BA), namely N⁶‐benzoyladenine–3‐hydroxypyridinium‐2‐carboxylate (3HPA) (1/1), C₁₂H₉N₅O·C₆H₅NO₃, (I), and N⁶‐benzoyladenine–DL‐tartaric acid (TA) (1/1), C₁₂H₉N₅O·C₄H₆O₆, (II), are reported. In both cocrystals, the N⁶‐benzoyladenine molecule exists as the N(7)—H tautomer, and this tautomeric form is stabilized by intramolecular N—H...O hydrogen bonding between the benzoyl C=O group and the N(7)—H hydrogen on the Hoogsteen site of the purine ring, forming an S(7) motif. The dihedral angle between the adenine and phenyl planes is 0.94 (8)° in (I) and 9.77 (8)° in (II). In (I), the Watson–Crick face of BA (N6—H and N1; purine numbering) interacts with the carboxylate and phenol groups of 3HPA through N—H...O and O—H...N hydrogen bonds, generating a ring‐motif heterosynthon [graph set R₂²(6)]. However, in (II), the Hoogsteen face of BA (benzoyl O atom and N7; purine numbering) interacts with TA (hydroxy and carbonyl O atoms) through N—H...O and O—H...O hydrogen bonds, generating a different heterosynthon [graph set R₂²(4)]. Both crystal structures are further stabilized by π–π stacking interactions.     

DFT study of the gas‐phase thermal decomposition kinetics of 2‐ethoxypyridine into 2‐pyridone

The mechanism of the gas‐phase elimination kinetics of 2‐ethoxypyridine has been studied through the electronic structure calculations using density functional methods: B3LYP/6‐31G(d,p), B3LYP/6‐31++G(d,p), B3PW91/6‐31G(d,p), B3PW91/6‐31++G(d,p), MPW1PW91/6‐31G(d,p), MPW1PW91/6‐31++G(d,p), PBEPBE/6‐31G(d,p), PBEPBE/6‐31++G(d,p), PBE1PBE1/6‐31G(d,p), and PBE1PBE1/6‐31++G(d,p). The elimination reaction of 2‐ethoxypyridine occurs through a six‐centered transition state geometry involving the pyridine nitrogen, the substituted carbon of the aromatic ring, the ethoxy oxygen, two carbons of the ethoxy group, and a hydrogen atom, which migrates from the ethoxy group to the nitrogen to give 2‐pyridone and ethylene. The reaction mechanism appears to occur with the participation of π‐electrons, similar to alkyl vinyl ether elimination reaction, with simultaneous ethylene formation and hydrogen migration to the pyridine nitrogen producing 2‐pyridone. © 2011 Wiley Periodicals, Inc. Int J Quantum Chem, 2011     

Electrocarboxylation of Acetophenone to 2‐Hydroxy‐2‐phenylpropionic Acid in the Presence of CO2

Electrocarboxylation of acetophenone with CO₂ to obtain 2‐hydroxy‐2‐phenylpropionic acid was carried out in acetonitrile solution containing 0.1 mol·L^?1 tetraethylammonium bromide. Influences of the nature of the electrodes, the working potential, the passed charge and the concentration of acetophenone on the electrocarboxylation were studied. After optimizing the synthetic parameters, the maximal isolated yield reached 73.0% on Mg‐stainless steel couple electrodes under potentiostatic electrolysis until 2.2 F·mol^?1 of charge was passed at 25 °C. The reduction of acetophenone was studied by cyclic voltammetry and the mechanism has been proposed on the basis of the results.     

Quantum chemical exploration of formaldehyde clusters (H2CO)n (n = 2–4)

Global exploration of equilibrium structures and interconversion pathways on the quantum chemical potential energy surface (PES) is performed for (H₂CO)n (n = 2–4) by using the Scaled Hypersphere Search‐Anharmonic Downward Distortion Following (SHS‐ADDF) method. Density functional theoretical (DFT) calculations with empirical dispersion corrections (D3) yielded comparable results for formaldehyde dimer in comparison with recent detailed studies at CCSD(T) levels. Based on DFT‐D3 calculations, trimer and tetramer structures and their stabilities were studied. For tetramer, a highly symmetrical S₄ structure was found as the most stable form in good accordance with experimentally determined tetramer unit in the formaldehyde crystal. © 2018 Wiley Periodicals, Inc.     

A theoretical investigation about the excited state behavior for 2‐(6'‐hydroxy‐2'‐pyridyl)benzimidazole: The water‐assisted excited state proton transfer process

In this work, based on density functional theory (DFT) and time‐dependent DFT (TD‐DFT) methods, we theoretically investigate the excited‐state process of the 2‐(6'‐hydroxy‐2'‐pyridyl)benzimidazole (2HPB) system in acetonitrile and water solvents. Since acetonitrile is an aprotic solvent, it has no effect on the solvent‐assisted excited‐state proton transfer (ESPT) process. Therefore, the 2HPB molecule cannot transfer the proton in acetonitrile, which is consistent with previous experimental observation. On the other hand, 2HPB can combine one water molecule (which is a protic solvent), forming the 2HPB–H₂O complex in the S₀ state. After photoexcitation, the intermolecular hydrogen bonds O1 H2···O3 and O3 H4···N5 both get strengthened in the S₁ state, which leads to the possibility of a water‐assisted ESPT process. Further, the charge redistribution reveals the tendency of ESPT. By exploring the potential energy curves for the 2HPB–H₂O complex in water, we confirm that a stepwise double proton transfer process occurs in the S₁ state. Water‐assisted ESIPT can occur along O1 H2···O3 or O3 H4···N5 because of their similar potential barriers. Based on the stepwise ESPT mechanism, we reinterpret the absorption and fluorescence spectra mentioned in the experiments and confirm the rationality of the water‐assisted ESPT process.     

Molecular dynamics of cis‐1‐(2‐hydroxy‐5‐ methylphenyl)ethanone oxime and N‐(2‐hydroxy‐4‐methylphenyl)acetamide in solution studied by NMR spectroscopy

The formation of hydrogen bonds and molecular dynamics for the molecules cis‐1‐(2‐hydroxy‐5‐methylphenyl)ethanone oxime ( I ) and N‐(2‐hydroxy‐4‐methylphenyl)acetamide ( II ) have been investigated in solution using NMR. The results confirm the formation of O? H···O, O? H···N and O···H? N type inter‐ and intramolecular hydrogen bonds. Spin‐lattice relaxation times (T₁), activation energy of molecular dynamics and energy of intramolecular hydrogen bonds have been determined. Copyright © 2010 John Wiley & Sons, Ltd.     

Preparation of CO2‐switchable latexes using N‐[3‐(dimethylamino)propyl]‐methacrylamide (DMAPMAm)

CO₂‐switchable polystyrene (PS), poly(methyl methacrylate) (PMMA), and poly(butyl methacrylate) (PBMA) latexes were prepared via surfactant‐free emulsion polymerization (SFEP) under a CO₂ atmosphere, employing N‐[3‐(dimethylamino)propyl]methacrylamide (DMAPMAm) as a CO₂‐switchable, water‐soluble, and hydrolytically stable comonomer. The conversion of the SFEP of styrene reaches >95% in less than 5 h. The resulting latexes have near monodisperse particles (PDI ≤ 0.05), as confirmed by DLS and TEM. The latexes could be destabilized by bubbling nitrogen (N₂) and heating at 65 °C for 30 min, and easily redispersed by only bubbling CO₂ for a short time without using sonication. © 2017 Wiley Periodicals, Inc. J. Polym. Sci., Part A: Polym. Chem. 2017 , 55, 1059–1066     

Ultrahigh Energy Density Realized by a Single‐Layer β‐Co(OH)2 All‐Solid‐State Asymmetric Supercapacitor

A conceptually new all‐solid‐state asymmetric supercapacitor based on atomically thin sheets is presented which offers the opportunity to optimize supercapacitor properties on an atomic level. As a prototype, β‐Co(OH)₂ single layers with five‐atoms layer thickness were synthesized through an oriented‐attachment strategy. The increased density‐of‐states and 100 % exposed hydrogen atoms endow the β‐Co(OH)₂ single‐layers‐based electrode with a large capacitance of 2028 F g^?1. The corresponding all‐solid‐state asymmetric supercapacitor achieves a high cell voltage of 1.8 V and an exceptional energy density of 98.9 Wh kg^?1 at an ultrahigh power density of 17 981 W kg^?1. Also, this integrated nanodevice exhibits excellent cyclability with 93.2 % capacitance retention after 10 000 cycles, holding great promise for constructing high‐energy storage nanodevices.     

The interaction of CO2 and CO with Fe‐doped SrTiO3(100) surfaces

The interaction of CO₂ and CO with 0.013 at.% Fe‐doped SrTiO₃(100) was investigated in situ with Metastable Induced Electron Spectroscopy (MIES) and XPS at room temperature. To clear up the influence of surface defects, cleaned and sputtered SrTiO₃ surfaces were investigated. Sputtering results in the breaking of Ti? O bonds in the surface and the formation of oxygen‐related defects as well as reduced titanium on the surface. Cleaned SrTiO₃ surfaces do neither interact with CO₂ nor with CO. Sputtered surfaces show a CO formation during CO₂ exposure and—to a lesser extent—during CO exposure. The CO groups can be detected very well with MIES because of its extreme surface sensitivity. With XPS, the characteristic carbonate peak shift of the C 1s orbitals can be detected. Copyright © 2011 John Wiley & Sons, Ltd.     

Theoretical study of the excited‐state double proton transfer in the (3‐methyl‐7‐azaindole)‐(7‐azaindole) heterodimer

Excited‐state double proton transfer (ESDPT) in the (3‐methyl‐7‐azaindole)‐(7‐azaindole) heterodimer is theoretically investigated by the long‐range corrected time‐dependent density functional theory method and the complete‐active‐space second‐order perturbation theory method. The calculated potential energy profiles exhibit a lower barrier for the concerted mechanism in the locally excited state than for the stepwise mechanism through the charge‐transfer state. This result suggests that the ESDPT in the isolated heterodimer is likely to follow the former mechanism, as has been exhibited for the ESDPT in the homodimer of 7‐azaindole. © 2012 Wiley Periodicals, Inc.     

Probing the Structural Stability of and Enhanced CO2 Storage in MOF MIL‐68(In) under High Pressures by FTIR Spectroscopy

The unique structural topology of metal–organic framework (MOF) MIL‐68, featuring two types of channels with distinct pore sizes, makes it a promising candidate for application in gas storage and separation. In this study, the behavior of as‐made and activated MIL‐68(In) was investigated in a diamond‐anvil cell under high pressure by in situ IR spectroscopy. The framework exhibits high stability under compression up to 9 GPa, whereas the bridging OH groups appear to be very sensitive to compression. Pressure‐induced structural modifications were found to be completely reversible for as‐made MIL‐68(In) but irreversible for the activated framework. Moreover, the addition of Nujol as pressure‐transmitting medium makes the framework more resilient to pressure. Finally, when loaded with CO₂, the framework exhibited interesting differential binding affinities with CO₂ in the hexagonal and triangular pores at different pressures. The pressure‐enhanced CO₂ storage behavior and the guest–host interaction mechanism between CO₂ and the MOF framework were explored with the aid of Monte Carlo simulations. These studies demonstrated great potential for MIL‐68(In) in gas‐storage applications that require extreme loading pressures.     

Morphology and dynamics of the poly(ϵ‐caprolactone)‐b‐poly(L‐lactide) diblock copolymer and its inclusion compound with α‐cyclodextrin: A solid‐state 13C NMR study

A biodegradable diblock copolymer of poly(ϵ‐caprolactone) (PCL) and poly(L ‐lactide) (PLLA) was synthesized and characterized. The inclusion compound (IC) of this copolymer with α‐cyclodextrin (α‐CD) was formed and characterized. Wide‐angle X‐ray diffraction showed that in the IC crystals α‐CDs were packed in the channel mode, which isolated and restricted the individual guest copolymer chains to highly extended conformation. Solid‐state ¹³C NMR techniques were used to investigate the morphology and dynamics of both the bulk and α‐CD‐IC isolated PCL‐b‐PLLA chains. The conformation of the PCL blocks isolated within the α‐CD cavities was similar to the crystalline conformation of PCL blocks in the bulk copolymer. Spin–lattice relaxation time (T₁C) measurements revealed a dramatic difference in the mobilities of the semicrystalline bulk copolymer chains and those isolated in the α‐CD‐IC channels. Carbon‐observed proton spin–lattice relaxation in the rotating frame measurements (T_1ρH) showed that the bulk copolymer was phase‐separated, while, in the IC, exchange of proton magnetization through spin‐diffusion between the isolated guest polymer chains and the host α‐CD was not complete. The two‐dimensional solid‐state heteronuclear correlation (HetCor) method was also employed to monitor proton communication in these samples. Intrablock exchange of proton magnetization was observed in both the bulk semicrystalline and IC copolymer samples at short mixing times; however, even at the longest mixing time, interblock proton communication was not observed in either sample. In spite of the physical closeness between the isolated included guest chains and the host α‐CD molecules, efficient proton spin diffusion was not observed between them in the IC. © 2005 Wiley Periodicals, Inc. J Polym Sci Part B: Polym Phys 43: 2086–2096, 2005     

Molecular dynamics study of the stereostructure of 1,4‐linked poly(cyclohexa‐1,3‐diene) obtained with π‐allylnickel‐based catalysts

Temperature‐constant and pressure‐constant molecular dynamics simulations of crystalline 1,4‐linked poly(cyclohexa‐1,3‐diene) (CHD) were performed using the COMPASS force field. Powder X‐ray diffraction spectra calculated from the simulated atomic coordinates were compared with the measured spectrum of the crystal of 1,4‐linked poly(CHD), obtained using a bis(allylnickel bromide) (ANiBr)/methylaluminoxane (MAO) catalyst. As a result of the comparison, the geometrical isomerism of the 1,4‐linked poly(CHD) obtained with the ANiBr/MAO catalyst was found to be cis syndiotactic. © 2001 John Wiley & Sons, Inc. J Polym Sci B: Polym Phys 39: 973–978, 2001