An EPR study on ancient and newly synthesised Egyptian blue

Two sets of ancient roman Egyptian blue (EB) samples and one set of EB samples synthesised in our lab, were analysed by EPR spectroscopy, a technique not commonly used in this field. The spectroscopic parameters obtained were used to attempt the discrimination of the provenance and of the manufacturing techniques of the investigated samples.The results obtained show that EPR technique could be very useful for this purpose.Furthermore, the similarity of the obtained parameters between the ancient and new samples testify the successful attempt to reproduce the EB according to the chemical knowledge.     

Determining the topology of integral membrane peptides using EPR spectroscopy

This paper reports on the development of a new structural biology technique for determining the membrane topology of an integral membrane protein inserted into magnetically aligned phospholipid bilayers (bicelles) using EPR spectroscopy. The nitroxide spin probe, 2,2,6,6-tetramethylpiperidine-1-oxyl-4-amino-4-carboxylic acid (TOAC), was attached to the pore-lining transmembrane domain (M2delta) of the nicotinic acetylcholine receptor (AChR) and incorporated into a bicelle. The corresponding EPR spectra revealed hyperfine splittings that were highly dependent on the macroscopic orientation of the bicelles with respect to the static magnetic field. The helical tilt of the peptide can be easily calculated using the hyperfine splittings gleaned from the orientational dependent EPR spectra. A helical tilt of 14 degrees was calculated for the M2delta peptide with respect to the bilayer normal of the membrane, which agrees well with previous 15N solid-state NMR studies. The helical tilt of the peptide was verified by simulating the corresponding EPR spectra using the standardized MOMD approach. This new method is advantageous because: (1) bicelle samples are easy to prepare, (2) the helical tilt can be directly calculated from the orientational-dependent hyperfine splitting in the EPR spectra, and (3) EPR spectroscopy is approximately 1000-fold more sensitive than 15N solid-state NMR spectroscopy; thus, the helical tilt of an integral membrane peptide can be determined with only 100 microg of peptide. The helical tilt can be determined more accurately by placing TOAC spin labels at several positions with this technique.     

Structural analysis of metal ion ligation to nucleotides and nucleic acids using pulsed EPR spectroscopy

Metal ions play key structural and functional roles in many nucleic acid systems, particularly as required cofactors for many catalytic RNA molecules (ribozymes). We apply the pulsed EPR technologies of electron spin-echo envelope modulation and electron spin-echo-electron nuclear double resonance to the structural analysis of the paramagnetic metal ion Mn(II) bound to nucleotides and nucleic acids. We demonstrate that pulsed EPR, supplemented with specific isotope labeling, can characterize ligation to nucleotide base nitrogens, outer-sphere interactions with phosphate groups, distances to sites of specific (2)H atom labels, and the hydration level of the metal ion. These techniques allow a comprehensive structural analysis of the mononucleotide model system MnGMP. Spectra of phenylalanine-specific transfer RNA from budding yeast and of the hammerhead ribozyme demonstrate the applicability of the methods to larger, structured RNA systems. This suite of experiments opens the way to detailed structural characterization of specifically bound metal ions in a variety of ribozymes and other nucleic acids of biological interest.     

Classification of ancient Roman glazed ceramics using the neural network of Self-Organizing Maps

Artificial neural networks with unsupervised learning strategy known as Self-Organizing Maps were applied to classify ancient Roman glazed ceramics. Their clay ceramic bodies were analyzed by Inductively Coupled Plasma-Atomic Emission Spectroscopy and the chemical composition obtained was processed by this neural algorithm. The results obtained provide two types of information: firstly, classification of ceramic samples with identification of several groups and secondly, differentiation between the elemental chemical information. It was found that there are certain chemical elements which can be considered as principal and which can serve to differentiate between ceramics, whereas other elements give redundant information and do not contribute to sample differentiation. Seven chemical elements were considered principal and provide the necessary information. Two types of element were identified: 1- a group formed by common elements, such as: Ca, Fe, Mg, Mn and 2- another formed by optional elements: K or Na and Ba or Sr and Al or Ti.     

Classification of ancient Roman glazed ceramics using the neural network of Self-Organizing Maps

Artificial neural networks with unsupervised learning strategy known as Self-Organizing Maps were applied to classify ancient Roman glazed ceramics. Their clay ceramic bodies were analyzed by Inductively Coupled Plasma-Atomic Emission Spectroscopy and the chemical composition obtained was processed by this neural algorithm. The results obtained provide two types of information: firstly, classification of ceramic samples with identification of several groups and secondly, differentiation between the elemental chemical information. It was found that there are certain chemical elements which can be considered as principal and which can serve to differentiate between ceramics, whereas other elements give redundant information and do not contribute to sample differentiation. Seven chemical elements were considered principal and provide the necessary information. Two types of element were identified: 1 – a group formed by common elements, such as: Ca, Fe, Mg, Mn and 2 – another formed by optional elements: K or Na and Ba or Sr and Al or Ti.     

Metalloglycomics: a new perspective upon competitive metal-carbohydrate binding using EPR spectroscopy

Ternary complexes formed between calcium, the oxochromium(v) ion and N-acetylneuraminic (sialic) acid (naH(6)) of the form, Ca(ii)-oxoCr(v)-naH(6), have electronic structures and equilibrium distributions distinct from the binary oxoCr(v)-naH(6) analogues, as illustrated by electron paramagnetic resonance (EPR) spectroscopy.     

Relationship of rotational correlation time from EPR spectroscopy and protein-membrane interaction

A study was carried out to determine if rotational correlation time of spin-labeled hen egg lysozyme (HEL) interacting with ultrafiltration membranes could be used to infer protein-membrane interaction. Polysulfone and cellulosic membranes, which have notably different adsorption properties, and membranes with varying pore sizes were used in this study. Based on this study, it was determined that the rotational correlation time does reflect variations in protein adsorption and pore plugging on membranes. The rotational correlation times for the highly adsorbent polysulfone (2.82 × 10⁻⁸ s) were significantly higher than those obtained from proteins on cellulosic membranes (0.62 × 10⁻⁸ s) and from those in solution (0.17 × 10⁻⁸ s). Rotational correlation time was also increased due to steric hindrance associated with pore plugging, although it was not as significant as the adsorption effect. This study indicates that the rotational time constant can be used to infer the type of protein-membrane interaction.     

Cu2+ binding modes of recombinant alpha-synuclein--insights from EPR spectroscopy

The interaction of the small (140 amino acid) protein, alpha-synuclein (alphaS), with Cu(2+) has been proposed to play a role in Parkinson's disease (PD). While some insight from truncated model complexes has been gained, the nature of the corresponding Cu(2+) binding modes in the full length protein remains comparatively less well characterized. This work examined the Cu(2+) binding of recombinant human alphaS using Electron Paramagnetic Resonance (EPR) spectroscopy. Wild type (wt) alphaS was shown to bind stoichiometric Cu(2+) via two N-terminal binding modes at physiological pH. An H50N mutation isolated one binding mode, whose g parallel, A parallel, and metal-ligand hyperfine parameters correlated well with a {NH2, N(-), beta-COO(-), H2O} mode previously identified in truncated model fragments. Electron spin-echo envelope modulation (ESEEM) studies of wt alphaS confirmed the second binding mode at pH 7.4 involved coordination of His50 and its g parallel and A parallel parameters correlated with either {NH2, N(-), beta-COO(-), N(Im)} or {N(Im), 2 N(-)} coordination observed in alphaS fragments. At pH 5.0, His50-anchored Cu(2+) binding was greatly diminished, while {NH2, N(-), beta-COO(-), H2O} binding persisted in conjunction with another two binding modes. Metal-ligand hyperfine interactions from one of these indicated a 1N3O coordination sphere, which was ascribed to a {NH2, CO} binding mode. The other was characterized by a spectrum similar to that previously observed for diethylpyrocarbonate-treated alphaS and was attributed to C-terminal binding centered on Asp121. In total, four Cu(2+) binding modes were identified within pH 5.0-7.4, providing a more comprehensive picture of the Cu(2+) binding properties of recombinant alphaS.     

Investigation of ancient pottery from Lefkanti,Greece, by epithermal gamma spectroscopy using loss-free counting technology

For the analysis of pottery fragments from ancient Lefkanti, instrumental neutron activation analysis was used. To have a good throughput of samples, a detectable series of short-lived isotopes was selected for the investigation. The problem of the initial high radioactivity, which normally hinders a fast -spectroscopic analysis, was eluded by using loss-free counting technology. This technology allows the measurement of pottery samples of about 100 mg size 1 day after a 30 min epithermal irradiation. Up to 15 samples could be analyzed in one day under these working conditions, having the possibility to analyze the elements As, Eu, Ga, Gd, La, Mn, Sb, Sm, Th, U, W and Zn, which are enough to perform statistical characterizations of potteries.     

Comparison between two INAA methods applied to chemical characterization of ancient ceramics

Two different instrumental neutron activation analysis (INAA) methods were applied to characterize chemically 74 ceramic roof tile samples, found in the town of Pella, Greece and dated back to the Hellenistic Period (3rd century B. C.). The samples were first analyzed for 17 elements with a 4 hour irradiation and two counts and then re-analyzed for 9 elements with a 1 minute irradiation and two counts of short-lived radioisotopes. The results of both methods were very similar, showing the validity of the rapid INAA method (1 min irradiation) in the study of ancient ceramics. All samples were divided into 4 chemical groups, each one representing a different tiling.     

Thermal and mineralogical contribution to the ancient ceramics and natural clays characterization

In the present work 39 ancient ceramic sherds from the archaeological excavation of Abdera, North-Eastern Greece, dating to 7^th century B.C., and 11 local raw clay bricks, fired at temperatures ranging from 500 to 1000°C, were characterized by ICP-AES, powder X-ray diffraction (PXRD) and thermal analysis (TG-DTA) techniques. It has been found that the mineralogical composition of the most studied sherds is quartz, feldspars and micas, which is in agreement with the composition of the local bricks. Chlorite is also present in a few samples, while there is one completely different sherd, which belongs to the Ca-rich clays. From the simultaneous TG/DTG and DTA data, under nitrogen atmosphere in the temperature ranges ambient to 1000°C, we comment on the possible firing temperature and distinguish between samples of different origin. The existence of muscovite or illite in most of the samples denotes that the firing temperature was lower than 950°C, while the existence of chlorite means that the firing process in these samples stopped before 700°C. A very different thermogram gave the Ca-rich ceramic sherd, due to the existence of calcite, denoting that the firing temperature was about 700°C.     

Application of chemical and chemometric analytical techniques to the study of ancient ceramics from Dougga (Tunisia)

In the present paper chemical characterization has been carried out on 67 shards of archaeological pottery from Dougga (North Tunisia). The analysed shards, dated to the Byzantine period (VI–VII century A.D.), belong to the three ceramic classes African Red Slip Ware, Dougga Ware and African cooking Ware. Fourteen elements have been determined by both atomic emission spectroscopy with flame as source (AES) and by using an inductively coupled plasma source (ICP-OES). The data acquired have been treated by statistical techniques in order to define grouping for the examined shards. Both unsupervised and supervised methods have been employed in order to define groups of different pottery shards. As a comparison, some samples (control group) coming from Southern Tunisia have been examined. All the statistical methods employed have evidenced how the control group, as concerns the chemical composition, is clearly distinguishable from Ain Wassel samples which are highly homogeneous. In fact because of the compositional homogeneity of the Northern Tunisia productions, it is quite difficult to establish a good classification and distribution of the samples in well defined cluster. Nevertheless supervised analysis has evidenced how, among the three classes, the African cooking Ware is the more distinguishable one confirming the archaeologists' hypothesis that Dougga Ware is an imitation of African Red Slip Ware.     

Correlations of structure and electronic properties from EPR spectroscopy of hydroxylamine oxidoreductase.

Hydroxylamine oxidoreductase (HAO) from the autotrophic nitrifying bacterium Nitrosomonas europaea catalyzes the oxidation of NH(2)OH to HNO(2). The enzyme contains eight hemes per subunit which participate in catalytic function and electron transport. The structure of the enzyme shows a unique spatial arrangement of the eight hemes, subsets of which are now observed in four other proteins. The spatial arrangement displays three types of diheme pairing motifs. At least four of the eight hemes are electronically coupled in two distinguishable pairs and one of these pairs is at the active site of the enzyme. Here, the use of quantitative simulation of the EPR signals allows determination of exchange couplings, and assignments of signals and reduction potentials to hemes of the crystal structure. The absence of any obvious heme-to-heme bonding pathway in the crystal structure suggests that the observed exchange interactions are derived from direct electronic overlap of porphyrin orbitals. This provides evidence for heme pairs which function as biological two-electron redox centers in electron-transfer processes.     

Time-resolved CIDNP: an NMR way to determine the EPR parameters of elusive radicals

Chemically Induced Dynamic Nuclear Polarization (CIDNP) of the diamagnetic products of radical reactions is exploited for the purpose of determination of the hyperfine coupling constants (HFCCs) of the radical intermediates. A simple proportionality relation between geminate CIDNP of a nucleus and its HFCC at the radical stage is established. The applicability range of this relation is determined: the relation is fulfilled in the case of a large difference in g-factor between the radicals involved and for the situation where the number of magnetic nuclei in the system is sufficiently large. The validity of the relation was confirmed by CIDNP experiments on radical pairs with precisely known HFCCs. Using the proportionality relation we were able to measure the HFCCs in various short-lived radicals of the amino acids histidine and tryptophan and of the S-N-centered cyclic radical of methionine derived from the methionine-glycine dipeptide in aqueous solution.     

Photoelectron intensity spectroscopy  analytical and structural information from peis applied to zeolites

X-ray photoelectron spectroscopy (XPS or ESCA) based on calculated photoionization cross sections was used to investigate the surface Si/Al ratio of different zeolites and the cation distribution in Ag- and Ca-exchanged NaA-zeolites. We find the same module at the surface as in the bulk, but a strong de-alumination of the surface after HCl treatment. The Ag⁺ ions are enriched and the Na⁺ ions depleted in the outer cavities of the zeolite crystals, both in strong dependence on the Ca content.     

EPR spectra from "EPR-silent" species: high-frequency and high-field EPR spectroscopy of pseudotetrahedral complexes of nickel(II)

High-frequency and high-field electron paramagnetic resonance (HFEPR) spectroscopy (using frequencies of approximately 90-550 GHz and fields up to approximately 15 T) has been used to probe the non-Kramers, S = 1, Ni(2+) ion in a series of pseudotetrahedral complexes of general formula NiL(2)X(2), where L = PPh(3) (Ph = phenyl) and X = Cl, Br, and I. Analysis based on full-matrix solutions to the spin Hamiltonian for an S = 1 system gave zero-field splitting parameters: D = +13.20(5) cm(-1), /E/ = 1.85(5) cm(-1), g(x) = g(y) = g(z) = 2.20(5) for Ni(PPh(3))(2)Cl(2). These values are in good agreement with those obtained by powder magnetic susceptibility and field-dependent magnetization measurements and with earlier, single-crystal magnetic susceptibility measurements. For Ni(PPh(3))(2)Br(2), HFEPR suggested /D/ = 4.5(5) cm(-1), /E/ = 1.5(5) cm(-1), g(x) = g(y) = 2.2(1), and g(z) = 2.0(1), which are in agreement with concurrent magnetic measurements, but do not agree with previous single-crystal work. The previous studies were performed on a minor crystal form, while the present study was performed on the major form, and apparently the electronic parameters differ greatly between the two. HFEPR of Ni(PPh(3))(2)I(2) was unsuccessful; however, magnetic susceptibility measurements indicated /D/ = 27.9(1) cm(-1), /E/ = 4.7(1), g(x) = 1.95(5), g(y) = 2.00(5), and g(z) = 2.11(5). This magnitude of the zero-field splitting ( approximately 840 GHz) is too large for successful detection of resonances, even for current HFEPR spectrometers. The electronic structure of these complexes is discussed in terms of their molecular structure and previous electronic absorption spectroscopic studies. This analysis, which involved fitting of experimental data to ligand-field parameters, shows that the halo ligands act as strong pi-donors, while the triphenylphosphane ligands are pi-acceptors.     

Study by grazing incident diffraction and surface spectroscopy of amalgams from ancient mirrors

Characterization of four amalgam surfaces, with different alteration degrees from Andalusia historical mirrors, has been carried out by grazing-incidence X-ray diffraction (GIXRD), and other spectroscopic techniques (SEM/EDX, XPS, and REELS). The combination of all these techniques allows determining the corrosion state of the amalgams. The results show that the amalgams are composed in all cases of a binary alloy of tin and mercury. As mercury has high vapour pressure at RT, it slowly segregates and eventually evaporates, it leaves finely divided particles of tin that easily can be oxidize, forming tin monoxide (SnO) and tin dioxide (SnO₂). In one of the samples, most of the amalgam remains unoxidized, since Hg_0.1Sn_0.9 and metallic Sn phases are the major components; in two other samples, Hg_0.1Sn_0.9 and Sn phases are not detected while SnO₂ and SnO phases appear. Finally, in the last studied sample, only SnO₂ phase is detected. The surface analyses of these samples by XPS show that, for most of them an unique chemical species (Sn⁴⁺) is found.      

Bidirectional electron transfer in photosystem I: direct evidence from high-frequency time-resolved EPR spectroscopy

Efficient charge separation occurring within membrane-bound reaction center proteins is the most important step of photosynthetic solar energy conversion. All reaction centers are classified into two types, I and II. X-ray crystal structures reveal that both types bind two symmetric membrane-spanning branches of potential electron-transfer cofactors. Determination of the functional roles of these pairs of branches is of fundamental importance. While it is established that in type II reaction centers only one branch functions in electron transfer, we present the first direct spectroscopic evidence that both cofactor branches are active in the type I reaction center, photosystem I.