Approaches to high throughput physical organic chemistry

High throughput (HT) techniques are now extensively used for the synthesis of libraries of several thousands of compounds. More recently, HT methods began to be applied to other areas, such as physical organic chemistry. This has allowed for instance the development of tools for HT reaction assessment, HT kinetic and thermodynamic measurements, and physicochemical property profiling, using a broad set of analytical tools, ranging from mass spectrometry to image analysis based techniques. This article provides an overview of recent HT physical organic chemistry techniques. Special attention is given to the application of quantitative analytical constructs for HT monomer reactivity profiling and HT evaluation of Hammett parameters.     

The chemistry of organic nanomaterials

The development of nanotechnology using organic materials is one of the most intellectually and commercially exciting stories of our times. Advances in synthetic chemistry and in methods for the investigation and manipulation of individual molecules and small ensembles of molecules have produced major advances in the field of organic nanomaterials. The new insights into the optical and electronic properties of molecules obtained by means of single-molecule spectroscopy and scanning probe microscopy have spurred chemists to conceive and make novel molecular and supramolecular designs. Methods have also been sought to exploit the properties of these materials in optoelectronic devices, and prototypes and models for new nanoscale devices have been demonstrated. This Review aims to show how the interaction between synthetic chemistry and spectroscopy has driven the field of organic nanomaterials forward towards the ultimate goal of new technology.     

High throughput physical organic chemistry: analytical constructs for monomer reactivity profiling

A polymer-supported analytical construct was used to quantify the reactivity of a range of monomers in the Ugi four-component condensation using positive electrospray ionization mass spectrometry (MS) as a quantitative analytical tool. The construct incorporated a bromo group to act as a peak splitter and a quaternary ammonium to act as a MS sensitizer and ionization leveler, thereby allowing direct quantitation of the cleaved adducts by MS. The relative reactivities of 10 carboxylic acids were quantified by the relative levels of product generated as determined by MS and 10 isonitriles, and 10 aldehydes were investigated in the same way. The effect of concentration variations on monomers reactivity and product profiles were rapidly determined using this approach, and the method opens up the way for studying, in a single pot, multiple reactions with a broad range of monomers under identical and self-consistent reaction conditions.     

The organic chemistry of silver acetylides

Silver acetylides are among the oldest organometallics known; however, their applications in organic chemistry remained scarce until very recently. Indeed, several reactions involving silver salts as catalyst or silver acetylides have been reported in the past five years. The extreme mildness and very low basicity of these nucleophilic reagents nicely complement the behavior of other alkynyl metals, rendering them very useful in various transformations, especially in the synthesis of complex molecules. Silver acetylides are now seen as promising tools in organic chemistry. This critical review focuses on this emerging field, and, with emphasis on mechanistic aspects, cover the synthesis of silver acetylides, their applications in organic chemistry and reactions involving silver salts as catalysts where silver acetylides are probable intermediates.     

The chemistry and biology of organic guanidine derivatives

Organic guanidine compounds are reviewed, with emphasis on natural products isolation, identification, synthesis and biological activities. The literature survey includes purely synthetic guanidine derivatives, guanidine alkaloids and non-ribosomal peptides from bacteria and cyanobacteria, as well as related compounds isolated from marine and terrestrial invertebrates and higher plants.     

The nucleophilicity N index in organic chemistry

The nucleophilicity N index (J. Org. Chem. 2008, 73, 4615), the inverse of the electrophilicity, 1/ω, and the recently proposed inverse of the electrodonating power, 1/ω?, (J. Org. Chem. 2010, 75, 4957) have been checked toward (i) a series of single 5-substituted indoles for which rate constants are available, (ii) a series of para-substituted phenols, and for (iii) a series of 2,5-disubstituted bicyclic[2.2.1]hepta-2,5-dienes which display concurrently electrophilic and nucleophilic behaviors. While all considered indices account well for the nucleophilic behavior of organic molecules having a single substitution, the nucleophilicity N index works better for more complex molecules. Unlike, the inverse of the electrophilicity, 1/ω, (R(2) = 0.71), and the inverse of the electrodonating power, 1/ω? (R(2) = 0.83), a very good correlation of the nucleophilicity N index of twelve 2-substituted-6-methoxy-bicyclic[2.2.1]hepta-2,5-dienes versus the activation energy associated with the nucleophilic attack on 1,1-dicyanoethylene is found (R(2) = 0.99). This comparative study allows to assert that the nucleophilicity N index is a measure of the nucleophilicity of complex organic molecules displaying concurrently electrophilic and nucleophilic behaviors.     

Methodology development and physical organic chemistry: a powerful combination for the advancement of glycochemistry

This Perspective outlines work in the Crich group on the diastereoselective synthesis of the so-called difficult classes of glycosidic bond: the 2-deoxy-β-glycopyranosides, the β-mannopyranosides, the α-sialosides, the α-glucopyranosides, and the β-arabinofuranosides with an emphasis on the critical interplay between mechanism and methodology development.     

Fun with photons, reactive intermediates, and friends. Skating on the edge of the paradigms of physical organic chemistry, organic supramolecular photochemistry, and spin chemistry

This Perspective presents a review and survey of the science and philosophy of my research career over the past five decades at Columbia as a physical organic chemist and photochemist. I explore the role of paradigms, structure, and geometric thinking in my own cognitive and intellectual development. The Perspective describes my investigations of high energy content molecules in electronically excited states and the development of electronic spin and supramolecular photochemistry chemistry. Current research dealing with the nuclear spin chemistry of H(2) incarcerated in buckyballs is illustrated. In the second part of this Perspective, I recount a personal role of the philosophy and history of science and the scientific communities' use of paradigms in their every day research and intellectual activities. Examples are given of the crucial role of geometry and structure in the rapid development of organic chemistry and physical organic chemistry over the past century.     

The role of mass spectrometry in organic chemistry

It is well known that mass spectrometry (MS) is a very versatile physical method which is applied to many branches of chemistry. Two main lines of development can be discerned: (i) organic chemical analysis. (ii) gas phase chemistry of organic ions. Both will be surveyed and discussed and will be followed by some speculations on future developments.     

Past, present, and future of applications of electroanalytical techniques in analytical and physical organic chemistry

After a brief introduction describing the main milestones in the development of DC polarography (DCP) as well as linear sweep (LSV) and cyclic voltammetry (CV), attention is paid to first applications of DCP in the reduction of organic compounds. In aqueous solutions the electron transfer (ET) is often accompanied by a proton transfer. Limiting currents in DCP enable investigation of kinetics of chemical reactions preceding ET. Dependence of the limiting current on concentration of a reagent, like H⁺ or OH^{??/sup> ions, enables determination of rate constants (k) of very fast reactions, with k values between 104 and 1010?L?mol???s??, comparable with those studied by relaxation methods. Application of CV is most advantageous for investigation of rates of chemical reactions following the ET. Comparison of analytical applications of DCP (reductions) with those of LSV (oxidations) is given. Apart from fast reactions taking place before the ET in the solution in the vicinity of the electrode surface, DCP can also be used for investigation of slower reactions, taking place in the bulk of the solution. Data obtained by DCP for determination of equilibrium (K) and rate (k) constants of reactions of organic compounds. Hence, DCP can be used in physical organic chemistry of solutions, in some cases complementing data obtained by UV–vis spectrophotometry. Some examples of determinations of K and k are given. Uncertain future of practical analytical applications of DCP and LSV is discussed as is the brighter future of applications in physical organic chemistry. As the main factor limiting successful applications is considered the limited opportunity for education of future research advisors in academia and group supervisors in industry.}