Non-aqueous solvents for DNP surface enhanced NMR spectroscopy

A series of non-aqueous solvents combined with the exogenous biradical bTbK are developed for DNP NMR that yield enhancements comparable to the best available water based systems. 1,1,2,2-tetrachloroethane appears to be one of the most promising organic solvents for DNP solid-state NMR. Here this results in a reduction in experimental times by a factor of 1000. These new solvents are demonstrated with the first DNP surface enhanced NMR characterization of an organometallic complex supported on a hydrophobic surface.     

Pressure dependence of NMR spectroscopy for studying intermolecular interactions 1H NMR in organic solvents involving the nitroxide radical

Pressure effects on ¹H chemical shifts and relaxation rates in organic solvents containing the nitroxide radical have been observed. ¹H chemical shifts with pressure and pressure-broadenings for hydrogen bonding between proton-donor molecules and the nitroxide radical have been observed.     

Visualization of enantiomers in cholesteric solvents through deuterium NMR

Proton decoupled deuterium NMR of mixtures of enantiomers in homogeneously oriented cholesteric solvents produces simple spectra with linewidths of 10 to 50 Hz in cases where the proton spectra would give second order patterns so complicated as to defy analysis. The chiral solvent orders each of a pair of enantiomers differently which results in a difference in the residual quadrupolar coupling constant yielding well resolved spectra for each enantiomer. That the technique constitutes a new tool for measurement of enantiomeric ratios is illustrated using several chiral benzylic alcohols.     

Visualization of enantiomers in cholesteric solvents through deuterium NMR

Abstract

Proton decoupled deuterium NMR of mixtures of enantiomers in homogeneously oriented cholesteric solvents produces simple spectra with linewidths of 10 to 50 Hz in cases where the proton spectra would give second order patterns so complicated as to defy analysis. The chiral solvent orders each of a pair of enantiomers differently which results in a difference in the residual quadrupolar coupling constant yielding well resolved spectra for each enantiomer. That the technique constitutes a new tool for measurement of enantiomeric ratios is illustrated using several chiral benzylic alcohols.     

Cryogenic NMR spectroscopy of endohedral hydrogen-fullerene complexes

We have observed 1H NMR spectra of hydrogen molecules trapped inside modified fullerene cages under cryogenic conditions. Experiments on static samples were performed at sample temperatures down to 4.3 K, while magic-angle-spinning (MAS) experiments were performed at temperatures down to 20 K at spinning frequencies of 15 kHz. Both types of NMR spectra show a large increase in the intramolecular 1H-1H dipolar coupling at temperatures below 50 K, revealing thermal selection of a small number of spatial rotational states. The static and MAS spectra were compared to estimate the degree of sample heating in high-speed cryogenic MAS-NMR experiments. The cryogenic MAS-NMR data show that the site resolution of magic-angle-spinning NMR may be combined with the high signal strength of cryogenic operation and that cryogenic phenomena may be studied with chemical site selectivity.     

Nascent chain dynamics and ribosome interactions within folded ribosome–nascent chain complexes observed by NMR spectroscopy

The folding of many proteins can begin during biosynthesis on the ribosome and can be modulated by the ribosome itself. Such perturbations are generally believed to be mediated through interactions between the nascent chain and the ribosome surface, but despite recent progress in characterising interactions of unfolded states with the ribosome, and their impact on the initiation of co-translational folding, a complete quantitative analysis of interactions across both folded and unfolded states of a nascent chain has yet to be realised. Here we apply solution-state NMR spectroscopy to measure transverse proton relaxation rates for methyl groups in folded ribosome–nascent chain complexes of the FLN5 filamin domain. We observe substantial increases in relaxation rates for the nascent chain relative to the isolated domain, which can be related to changes in effective rotational correlation times using measurements of relaxation and cross-correlated relaxation in the isolated domain. Using this approach, we can identify interactions between the nascent chain and the ribosome surface, driven predominantly by electrostatics, and by measuring the change in these interactions as the subsequent FLN6 domain emerges, we may deduce their impact on the free energy landscapes associated with the co-translational folding process.

NMR measurements of methyl relaxation in translationally-arrested ribosome–nascent chain complexes probe the dynamics of folded nascent polypeptides emerging during biosynthesis and quantify their interaction with the ribosome surface.     

Residue ionization in LpxC directly observed by 67Zn NMR spectroscopy

The pH dependence of the solid-state (67)Zn NMR lineshapes has been measured for both the wild type (WT) and the H265A mutant of Aquifex aeolicus LpxC, each in the absence of substrate (resting state). The (67)Zn NMR spectrum of WT LpxC at pH 6 (prepared at 0 degrees C) contains two overlapping quadrupole lineshapes with C q values of 10 and 12.9 MHz, while the spectrum measured for the sample prepared at a pH near 9 (at 0 degrees C) is dominated by the appearance of a third species with a C q of 14.3 MHz. These findings are consistent with the two p K a values previously observed by the bell-shaped dependence of the LpxC-catalyzed reaction. On the basis of comparison of the experimental results with predictions from quantum mechanical/molecular mechanical (QM/MM) modeling, we suggest that p K a1 (low pH) represents the ionization of Glu78 and p K a2 (high pH) reflects the ionization of another active site residue located near the zinc ion, such as His265. These results are also consistent with water being bound to the Zn (2+) ion throughout this pH range. The (67)Zn NMR spectra of the H265A mutant appear to be pH independent, with a C q of 9.55 MHz being sufficient to describe both low- and high-pH data. The QM/MM models of the H265A mutant suggest that over this pH range water is bound to the zinc ion while Glu78 is protonated.     

Magnesium-25 NMR studies of magnesium salts and complexes in nonaqueous solvents

Magnesium-25 NMR measurements were carried out on aqueous and non-aqueous solutions of magnesium salts. In the former case the²⁵Mg resonance frequency was independent of the concentration or of the counterion. In nonaqueous solvents, however, the resonance frequency was dependent on the solvent, the concentration, and on the nature of the counterion, indicating some cation-anion interactions. Measurements on Mg²⁺—phosphonoacetic acid mixtures in aqueous solutions gave strong indications of complexation. Only inconclusive evidence was obtained on the complexation of Mg²⁺ by macro-bicyclic cryptand C211 in methanol solutions, and no evidence of complexation was obtained with macrocycle 12-crown-4 in dimethylformamide solutions.     

Mapping allostery through equilibrium perturbation NMR spectroscopy

The understanding of allostery relies on the comparative analysis of macromolecules in their free and bound states. However, the direct free versus bound comparison is often challenging due to the instability of one of the two forms. This problem is effectively circumvented by using minor free/bound equilibrium perturbations which are tolerated without compromising sample stability. The subtle equilibrium perturbations are still able to reveal significant apo/holo differences if monitored by NMR experiments that are sensitive to minor populations within dynamic equilibria, such as NMR relaxation dispersion (NMRD) and hydrogen exchange (H/D and H/H) rates. These measurements are complementary to each other as they unmask how a ligand affects both the stable and the excited states of the free energy landscape for its protein receptor. The proposed equilibrium perturbation approach therefore significantly expands the scope of applicability of NMRD and hydrogen exchange experiments to the investigation of ligand-protein interactions, in general, unveiling allosteric "hot spot" maps for systems that have been traditionally elusive to direct free/bound comparisons.     

Theory of NMR shifts and endor spectroscopy in paramagnetic complexes

A theory of NMR and ENDOR spectroscopy in paramagnetic complexes is presented. The relevant matrix elements of both the contact and pseudo-contact interaction within the eigenstates of the magnetic electrons are treated exactly. It is shown, that the interactions depend upon the azimuthal angle ? of the resonant nucleus, even for high point symmetries of the paramagnetic center. In the case of NMR shift measurements, where the spin-lattice relaxation time is short, the interaction of the nuclear spin with the electron's spin and orbital motion can be described by a temperature-dependent induced magnetic field which is not parallel to the applied field. The results differ even in lowest order of the multipole expansion from previous theories. The pseudo-contact shift for rare-earth complexes is correlated to susceptibility in a modified form. In iron-series complexes, such a correlation is generally not possible. Here, the familiar point-dipole approximation used in earlier theories is valid only, if the orbital angular momentum is quenched or if the resonant nucleus lies on the p-fold rotation axis and p ≥ 2.     

混配铂(Ⅱ)配合物堆积异构平衡的溶剂效应

在三元混配配合物中配体与配体之间的分子内芳环堆积是配体分子间的一种特殊作用形式 ,并且在溶液中存在着堆积异构平衡。这种由芳环堆积所产生的异构平衡也同样存在于生物体系内 ,并有着重要的生理效应[1 ,2 ] 。因而有关三元混配配合物分子内芳环堆积异构平衡的研究十分活跃[3～ 5] 。本文选定了羧酸系列配体 (ＣＡ)和另一配体 1 ,1 0 邻菲绕啉 (Ｐｈｅｎ)与铂 (Ⅱ)形成的三元混配配合物作为体系 ,系统研究了溶剂极性对三元混配配合物分子内芳环堆积异构平衡的影响。1　实验部分1 1　试剂和溶液标定氯铂酸钾 [Ｋ2 (ＰｔＣｌ4) ]、硝酸 (…     

Evidence for complexes of different stoichiometries between organic solvents and cyclodextrins

The influence of the organic solvent on the acid and basic hydrolysis of N-methyl-N-nitroso-p-toluenesulfonamide (MNTS) in the presence of alpha- and beta-cyclodextrins has been studied. The observed rate constant was found to decrease through the formation of an unreactive complex between MNTS and the cyclodextrins. In the presence of dioxane, acetonitrile or DMSO, the inhibitory effect of beta-CD decreased on increasing the proportion of organic cosolvent as a result of a competitive reaction involving the formation of an inclusion complex between beta-CD and the cosolvent. The disparate size of the organic solvent molecules resulted in stoichiometric differences between the complexes; the beta-CD-dioxane and beta-CD-DMSO complexes were 1 : 1 whereas the beta-CD-acetonitrile complex was 1 : 2. The basic and acid hydrolysis of MNTS in the presence of alpha-CD showed a different behavior; thus, the reaction gave both 1 : 1 and 2 : 1 alpha-CD-MNTS complexes, of which only the former was reactive. This result was due to the smaller cavity size of alpha-CD and the consequent decreased penetration of MNTS into the cavity in comparison to beta-CD. The acid hydrolysis of MNTS in the presence of alpha-CD also revealed decreased penetration of MNTS into the cyclodextrin cavity, as evidenced by the bound substrate undergoing acid hydrolysis. In addition, the acid hydrolysis of MNTS in the presence of acetonitrile containing alpha-CD gave 1 : 1 alpha-CD-acetonitrile inclusion complexes, which is consistent with a both a reduced cavity size and previously reported data.     

Conformations of banana-shaped molecules studied by 2H NMR spectroscopy in liquid crystalline solvents

ClPbis11BB and Pbis11BB, two banana-shaped mesogens differing by a chlorine substituent on the central phenyl ring, show a nematic and a B2 phase, respectively. To obtain information on the structural features responsible for their different mesomorphic behavior, a study of the preferred conformations of these mesogens has been performed by NMR spectroscopy in two nematic media (Phase IV and ZLI1167), which should mimic the environment of the molecules in their own mesophases, avoiding problems of sample alignment by a magnetic field. To this aim, 2H NMR experiments have been performed on selectively deuterated isotopomers of ClPbis11BB and Pbis11BB and of two parent molecules, ClPbisB and PbisB, assumed as models in previous theoretical and experimental conformational studies. We found that only a limited number of conformations is compatible with experimental data, often very different from those inferred from theoretical calculations in vacuo, indicating a strong influence of the liquid crystalline environment on molecular conformation. No significant differences between chlorinated and non-chlorinated molecules were found, this suggesting that chlorine does not change the molecular conformational equilibrium, as previously proposed.     

Characterization of noninnocent metal complexes using solid-state NMR spectroscopy: o-dioxolene vanadium complexes

(51)V solid-state NMR (SSNMR) studies of a series of noninnocent vanadium(V) catechol complexes have been conducted to evaluate the possibility that (51)V NMR observables, quadrupolar and chemical shift anisotropies, and electronic structures of such compounds can be used to characterize these compounds. The vanadium(V) catechol complexes described in these studies have relatively small quadrupolar coupling constants, which cover a surprisingly small range from 3.4 to 4.2 MHz. On the other hand, isotropic (51)V NMR chemical shifts cover a wide range from -200 to 400 ppm in solution and from -219 to 530 ppm in the solid state. A linear correlation of (51)V NMR isotropic solution and solid-state chemical shifts of complexes containing noninnocent ligands is observed. These experimental results provide the information needed for the application of (51)V SSNMR spectroscopy in characterizing the electronic properties of a wide variety of vanadium-containing systems and, in particular, those containing noninnocent ligands and that have chemical shifts outside the populated range of -300 to -700 ppm. The studies presented in this report demonstrate that the small quadrupolar couplings covering a narrow range of values reflect the symmetric electronic charge distribution, which is also similar across these complexes. These quadrupolar interaction parameters alone are not sufficient to capture the rich electronic structure of these complexes. In contrast, the chemical shift anisotropy tensor elements accessible from (51)V SSNMR experiments are a highly sensitive probe of subtle differences in electronic distribution and orbital occupancy in these compounds. Quantum chemical (density functional theory) calculations of NMR parameters for [VO(hshed)(Cat)] yield a (51)V chemical shift anisotropy tensor in reasonable agreement with the experimental results, but surprisingly the calculated quadrupolar coupling constant is significantly greater than the experimental value. The studies demonstrate that substitution of the catechol ligand with electron-donating groups results in an increase in the HOMO-LUMO gap and can be directly followed by an upfield shift for the vanadium catechol complex. In contrast, substitution of the catechol ligand with electron-withdrawing groups results in a decrease in the HOMO-LUMO gap and can directly be followed by a downfield shift for the complex. The vanadium catechol complexes were used in this work because (51)V is a half-integer quadrupolar nucleus whose NMR observables are highly sensitive to the local environment. However, the results are general and could be extended to other redox-active complexes that exhibit coordination chemistry similar to that of the vanadium catechol complexes.     

Determining accurate molecular sizes in solution through NMR diffusion spectroscopy

This tutorial review deals with the methodological procedures that can be used to obtain accurate molecular sizes in solution from diffusion NMR spectroscopy. The critical aspects associated with the estimation of the size of molecules from the measured translational self-diffusion coefficient, using the Stokes-Einstein equation, are highlighted and discussed. From a theoretical point of view, it is shown how to take into account the size of the solute with respect to that of the solvent and its non-spherical shape using the appropriate correction factors in the frictional coefficient. From a practical point of view, the advantages of introducing an internal standard in the sample are presented. Initially, non-aggregating systems are considered in an attempt to clarify what hydrodynamic dimensions mean. Successively, aggregating systems are addressed showing how it is possible to understand the aggregation level and derive the thermodynamic parameters for some illustrative aggregation processes.     

Thallium-205 NMR study of ti(I) macrocyclic complexes in nonaqueous solvents

Thallium-205 and carbon-13 NMR measurements were used to determine, in nonaqueous solvents, the stabilities of thallium(I) complexes with macrocyclic ligands of different structures but very nearly the same cavity sizes. In a given solvent the complexing abilities of the ligand vary in the order DA18C6 > 18C6 > DC18C6 > DB18C6 > DT18C6. In all cases the stabilities of the complexes varied inversely with the Gutmann donicities of the solvents.     

Water complexes with organic solvents in liquid phase. An IR spectroscopic study

An IR spectroscopic investigation indicates the formation of water complexes with organic solvents such as hexafluorobenzene, nitromethane, acetonitrile, and carbon tetrachloride. The IR bands in the 3000-2400 cm⁻¹ region can be assigned to OH-stretching vibrations of an H₂O molecule in complexes with solvents in the liquid phase.