Supramolecular liquid crystals formed by hydrogen bonding between a benzocrown-bearing stilbazole and carboxylic acids

The mesomorphism of hydrogen bonded complexes formed between 4'-carboxybenzo-15-crown-5 stilbazolyl ester (CBCSE) as proton acceptor and carboxylic acids as proton donors is discussed. CBCSE is a monotropic mesogen, forming a nematic phase upon quench cooling. A total of 32 hydrogen bonded complexes has been studied. Hydrogen bonding with carboxylic acids stabilizes the nematic phase, and/or induces a smectic A (SmA) phase. CBCSE forms 1:1 complexes (molar ratio) with alkanoic acids (fatty acids) and 2:1 complexes with alkanedioic acids. None of these proton donors is a mesogen itself, but the hydrogen bonded complexes are. The influence of the chain or spacer length on the transition temperatures is discussed. Besides the homologous series of the alkanoic and alkanedioic acids, the following carboxylic acids were used in this study: diglycolic acid, pyridine-2,6-dicarboxylic acid, 4-dodecyloxybenzoic acid, 3,4-bis(dodecyloxy)benzoic acid, 2,3,4-tris(dodecyloxy)benzoic acid and 3,4,5-tris(dodecyloxy)benzoic acid, phthalic acid, isophthalic acid and terephthalic acid.     

Supramolecular liquid crystals formed by hydrogen bonding between a benzocrown-bearing stilbazole and carboxylic acids

The mesomorphism of hydrogen bonded complexes formed between 4'-carboxybenzo-15-crown-5 stilbazolyl ester (CBCSE) as proton acceptor and carboxylic acids as proton donors is discussed. CBCSE is a monotropic mesogen, forming a nematic phase upon quench cooling. A total of 32 hydrogen bonded complexes has been studied. Hydrogen bonding with carboxylic acids stabilizes the nematic phase, and/or induces a smectic A (SmA) phase. CBCSE forms 1:1 complexes (molar ratio) with alkanoic acids (fatty acids) and 2:1 complexes with alkanedioic acids. None of these proton donors is a mesogen itself, but the hydrogen bonded complexes are. The influence of the chain or spacer length on the transition temperatures is discussed. Besides the homologous series of the alkanoic and alkanedioic acids, the following carboxylic acids were used in this study: diglycolic acid, pyridine-2,6-dicarboxylic acid, 4-dodecyloxybenzoic acid, 3,4-bis(dodecyloxy)benzoic acid, 2,3,4-tris(dodecyloxy)benzoic acid and 3,4,5-tris(dodecyloxy)benzoic acid, phthalic acid, isophthalic acid and terephthalic acid.     

Hydrogen‐bonded complexes of nicotine with simple alcohols

Ab initio and density functional theory studies have been performed on the hydrogen‐bonded complexes of neutral and protonated nicotine with ethanol, methanol, and trifluromethanol to explore their relative stability in a systematic way. Among all the hydrogen‐bonded nicotine complexes considered here, protonated forms in nicotine–ethanol and nicotine–methanol, and neutral form in nicotine–trifluromethanol complexes have been found to be the most stable. In the former two complexes, the proton attached to the pyrrolidine nitrogen acts as a strong hydrogen bond donor, whereas the pyrrolidine nitrogen atom acts as a hydrogen bond acceptor in the latter case. Neutral complex of nicotine with trifluromethanol has been found to possess a very short hydrogen bond (1.57 Å) and basis set superposition error corrected hydrogen bond energy value of 19 kcal/mol. The nature of the various hydrogen bonds formed has been investigated through topological aspects using Bader's atoms in molecules theory. From the calculated topological results, excellent linear correlation is shown to exist among the hydrogen bond length, electron density, and its Laplacian at the bond critical points for all the complexes considered. The natural bond orbital analysis has been carried out to investigate the charge transfer in the nicotine alcohol complexes. In contrast to the blue shifting behavior that is generally exhibited by other C? H···O hydrogen bonds involving sp³ carbon atom, the C? H···O hydrogen bond in the protonated nicotine–ethanol and methanol complexes has been found to be proper with red shifting in nature. © 2011 Wiley Periodicals, Inc.     

A nitrogen-15 NMR study of hydrogen bonding in 1-alkyl-4-imino-1,4-dihydro-3-quinolinecarboxylic acids and related compounds

The title compounds contain groups (amine, amide, imine, carboxylic acid) that are capable of forming intramolecular hydrogen bonds involving a six-membered ring. In compounds where the two interacting functional groups are imine and carboxylic acid, the imine is protonated to give a zwitterion; where the two groups are imine and amide, the amide remains intact and forms a hydrogen bond to the imine nitrogen. The former is confirmed by the iminium 15N signal, which shows the coupling of 1J(15N,1H) -85 to -86.8 Hz and 3J(1H,1H) 3.7-4.2 Hz between the iminium proton and the methine proton of a cyclopropyl substituent on the iminium nitrogen. Hydrogen bonding of the amide is confirmed by its high 1H chemical shift and by coupling of the amide hydrogen to (amide) nitrogen [(1J(15N,1H) -84.7 to -90.7 Hz)] and to ortho carbons of a phenyl substituent. Data obtained from N,N-dimethylanthranilic acid show 15N-1H coupling of (-)8.2 Hz at 223 K (increasing to (-)5.3 Hz at 243 K) consistent with the presence of a N... H-O hydrogen bond.     

Low-temperature NMR studies of the structure and dynamics of a novel series of acid-base complexes of HF with collidine exhibiting scalar couplings across hydrogen bonds

The low-temperature (1)H, (19)F, and (15)N NMR spectra of mixtures of collidine-(15)N (2,4,6-trimethylpyridine-(15)N, Col) with HF have been measured using CDF(3)/CDF(2)Cl as a solvent in the temperature range 94-170 K. Below 140 K, the slow proton and hydrogen bond exchange regime is reached where four hydrogen-bonded complexes between collidine and HF with the compositions 1:1, 2:3, 1:2, and 1:3 could be observed and assigned. For these complexes, chemical shifts and scalar coupling constants across the (19)F(1)H(19)F and (19)F(1)H(15)N hydrogen bridges have been measured which allowed us to determine the chemical composition of the complexes. The simplest complex, collidine hydrofluoride ColHF, is characterized at low temperatures by a structure intermediate between a molecular and a zwitterionic complex. Its NMR parameters depend strongly on temperature and the polarity of the solvent. The 2:3 complex [ColHFHCol](+)[FHF](-) is a contact ion pair. Collidinium hydrogen difluoride [ColH](+)[FHF](-) is an ionic salt exhibiting a strong hydrogen bond between collidinium and the [FHF](-) anion. In this complex, the anion [FHF](-) is subject to a fast reorientation rendering both fluorine atoms equivalent in the NMR time scale with an activation energy of about 5 kcal mol(-)(1) for the reorientation. Finally, collidinium dihydrogen trifluoride [ColH](+)[F(HF)(2)](-) is an ionic pair exhibiting one FHN and two FHF hydrogen bonds. Together with the [F(HF)(n)()](-) clusters studied previously (Shenderovich et al., Phys. Chem. Chem. Phys. 2002, 4, 5488), the new complexes represent an interesting model system where the evolution of scalar couplings between the heavy atoms and between the proton and the heavy atoms of hydrogen bonds can be studied. As in the related FHF case, we observe also for the FHN case a sign change of the coupling constant (1)J(FH) when the F.H distance is increased and the proton shifted to nitrogen. When the sign change occurs, that is, (1)J(FH) = 0, the heavy atom coupling constant (2)J(FN) remains very large, of the order of 95 Hz. Using the valence bond order model and hydrogen bond correlations, we describe the dependence of the hydrogen bond coupling constants, of hydrogen bond chemical shifts, and of some H/D isotope effects on the latter as a function of the hydrogen bond geometries.     

Small‐Molecule Recognition for Controlling Molecular Motion in Hydrogen‐Bond‐Assembled Rotaxanes

Di(acylamino)pyridines successfully template the formation of hydrogen‐bonded rotaxanes through five‐component clipping reactions. A solid‐state study showed the participation of the pyridine nitrogen atom in the stabilization of the mechanical bond between the thread and the benzylic amide macrocycle. The addition of external complementary binders to a series of interlocked bis(2,6‐di(acylamino)pyridines) promoted restraint of the back and forward ring motion. The original translation can be restored through a competitive recognition event by the addition of a preorganized bis(di(acylamino)pyridine) that forms stronger ADA–DAD complexes with the external binders.     

Chelidamic acid monohydrate: the proton complex of a multidentate ligand

Chelidamic acid, 4‐hydroxy­pyridine‐2,6‐di­carboxyl­ic acid, is found to be zwitterionic in its solid monohydrate form, C₇H₅NO₅·H₂O, with the aryl­oxide and one carboxyl­ate group remaining protonated, but the other carboxyl­ate group losing its proton to the pyridine N atom. In this, it is unlike its parent, dipicolinic acid (pyridine‐2,6‐di­carboxyl­ic acid), which also crystallizes as a monohydrate, but one in which the acidic H atoms remain bound to the carboxyl­ate groups. In both structures, the water mol­ecule is a component of an extended hydrogen‐bonded network.     

Formation of radical pairs in the photolysis of 2, 6-di(tert-butyl)-l,4-benzoquinonediazide in single crystals of 2,6-di(tert-butyl)-4-methylphenol

In the photolysis of single crystals of 2,6-di(tert-butyl)-4-methylphenol with the addition of 2,4-di(tert-butyl)-l,4-benzoquinonediazide it was found that they form carbenes and radical pairs with r₁=6.0 å, which are secondary products of the photolysis of the quinonediazide and which form as a result of transfer of a hydrogen atom from the phenol to the carbene. The high thermal stability of these radical pairs makes it possible to use them as two-spin probes. Also found were radical products that are annealed by light with wavelength greater than 560 nm and are hypothetically classified as ion-radical pairs with r_av=8.9 å.Translated from Izvestiya Akademii Nauk SSSR, Seriya Khimicheskaya, No. 3, pp. 560–564, March, 1991.     

Systematic ab initio study of 15N-15N and 15N-1H spin-spin coupling constants across N-H+-N hydrogen bonds: predicting N-N and N-H coupling constants and relating them to hydrogen bond type

A systematic ab initio EOM-CCSD study of 15N-15N and 15N-1H spin-spin coupling constants has been carried out for a series of complexes formed from 11 nitrogen bases with experimentally measured proton affinities. When these complexes are arranged in order of increasing proton affinity of the proton-acceptor base and, for each proton acceptor, increasing order of proton affinity of the protonated N-H donor, trends in distances and signs of coupling constants are evident that are indicative of the nature of the hydrogen bond. All two-bond spin-spin coupling constants (2hJ(N-N)) are positive and decrease as the N-N distance increases. All one-bond N-H coupling constants (1J(N-H)) are negative (1K(N-H) are positive). 1J(N-H) is related to the N-H distance and the hybridization of the donor N atom. One-bond H...N coupling constants (1hJ(H-N)) are positive (1hK(H-N) are negative) for traditional hydrogen bonds, but 1hJ(H-N) becomes negative when the hydrogen bond acquires sufficient proton-shared character. The N-N and H...N distances at which 1hJ(H-N) changes sign are approximately 2.71 and 1.62 A, respectively. Predictions are made of the values of 2hJ(N-N) and 1J(N-H), and the signs of 1hJ(H-N), for those complexes that are too large for EOM-CCSD calculations.     

Strong hydrogen‐bonded amino acid dimers in l‐alanine alaninium nitrate

The title compound, C₃H₇NO₂·C₃H₈NO₂⁺·NO₃^?, contains l ‐alanine–alaninium dimers bonded via the carboxyl groups by a strong asymmetric hydrogen bond with an O?O distance of 2.4547 (19) Å. The neutral alanine mol­ecule exists as a zwitterion, where the carboxyl group is dissociated and the amino group is protonated. The alaninium cation has both groups in their acidic form. The alanine mol­ecule and the alaninium cation differ only slightly in their conformation, having an N—C_α—C=O torsion angle close to ?25°. The dimers and the nitrate anion are joined through a three‐dimensional hydrogen‐bond network, in which the full hydrogen‐bonding capabilities of the amino groups of the two alanine moieties are realised.     

Design and function of pre-organised outer-sphere amidopyridyl extractants for zinc(II) and cobalt(II) chlorometallates: the role of C-H hydrogen bonds

Four new sterically hindered pyridines, L(1)-L(4)-containing amido substituents at the 2-position act as efficient solvent extractants for [CoCl(4)](2-) or [ZnCl(4)](2-) from acidic chloride solutions through protonation of the pyridino N-centre to form the neutral outer-sphere complexes [(LH)(2)MCl(4)]. These ionophores show very high selectivity for chlorometallate anions over chloride ion and are readily stripped to liberate the free-metal chlorides without the formation of inner-sphere complexes [ML(2)Cl(2)]. Single-crystal X-ray structure determinations of [(L(2)H)(2)CoCl(4)] and [(L(2)H)(2)ZnCl(4)] (L(2) = 2-(4,6-di-tert-butylpyridin-2-yl)-N,N'-dihexylmalonamide) coupled with (1)H?NMR spectroscopy and DFT calculations on L(2)H(+) and other complexes of [ZnCl(4)](2-) confirm that the pyridinium NH group does not address the outer co-ordination sphere of the metallanion, but rather forms a hydrogen bond to the pendant amide groups and thus pre-organizes the ligand to present both C-H and amido N-H hydrogen-bond donors to the [MCl(4)](2-) ions. The selectivity for chlorometallates over chloride ions shown by this class of extractants arises from their ability to present several polarized C-H units towards the charge-diffuse ions [MCl(4)](2-), whereas the smaller, "harder" chloride anion prefers to be associated with the amido N-H hydrogen-bond donors.     

A theoretical study of the hydrogen bond donor capability and co-operative effects in the hydrogen bond complexes of the diaza-aromatic betacarbolines

In this work, we present a quantum mechanical investigation on the hydrogen bond interactions of N(9)-methyl-9H-pyrido[3,4-b]indole, MBC, and N(2)-methyl-9H-pyrido[3,4-b]indole, BCA, with different hydrogen bond donors. Thus, it has been analysed the influence that the hydrogen bond donor strength and the co-operative effect of the increasing number of donor molecules have on the shape of the potential energy surfaces versus the N···H distances, r(N–H). To rationalize the nature of the interactions, the Bader theory has been applied and the characteristics of the bond critical points analysed. The results show that two different hydrogen bond complexes can be formed depending on the donor capabilities or the number of donor molecules included in the calculations. The topological parameters from the Bader theory are used to justify the statement that the analysed interactions can be classified as weak or partially covalent hydrogen bond interactions, respectively. As experimentally observed, weak hydrogen bond donors form weak hydrogen bond complexes, called HBC. Upon the increase of the donor strength the N···H proton is shifted nearest to the nitrogen atom giving rise to the observation of a stronger hydrogen bond complex, the proton transfer complex, PTC. The most outstanding result of these studies is the fact that the formation of the PTC can also be managed just by changing the number of donor molecules, that is, by a co-operative effect of the hydrogen bonds.     

Scalar Coupling between the 15N Centres in Methylated 1,8‐Diaminonaphthalenes and 1,6‐Diazacyclodecane: To What Extent is 2HJNN a Reliable Indicator of N?N Distance?

The scalar couplings between hydrogen bonded nitrogen centres ((2H)J(NN)) in the free-base and protonated forms of the complete series of [(15)N(2)]-N-methylated 1,8-diamino naphthalenes in [D(7)]DMF solution have been determined, either directly (15N[1H] NMR), or, indirectly (13C[1H] NMR and simulation of the X part of the ABX spectrum (X=13C, A,B=15N)). Additionally, the (2H)J(NN) value in the HBF(4) salt of [(15)N(2)]-1,6-dimethyl-1,6-diazacyclodecane was determined, indirectly by 13C[(1H] NMR spectroscopy. As confirmed by DFT calculations and by reference to CSD, the rigid nature of the naphthalene scaffold results in rather low deviations in N,N distance or H-N,N angle within each series, apart from the free base of the permethylated compound (proton sponge) where the naphthalene ring is severely distorted to relieve strain. Despite such restrictions, the (2H)J(NN) values increase smoothly from 1.5 to 8.5 Hz in the protonated series as the degree of methylation increases. The effect in the free-base forms is much less pronounced (2.9 to 3.7 Hz) with no scalar N,N coupling detected in the permethylated compound (proton sponge) due to the lack of hydrogen bond between the N,N centres. Neither the pK(a) nor the N-N distance in the protonated forms correlates with (2H)J(NN). However, the sum of the (13)C NMR shifts of the naphthalene ring C(1,8) carbons which are attached directly to the nitrogen centres correlates linearly with (2H)J(NN) and with the degree of methylation. The gas-phase computed (2H)J(NN) is almost constant throughout the homologous series, and close to the experimental value for the tetramethylated ion. However, the computed coupling constant is attenuated in structures involving microsolvation of each N-H unit, and the trend then matches experiment. These experimental and computational observations suggest that Fermi contact between the two N centres is decreased upon formation of strong charge-dispersing intermolecular hydrogen bonds of the free N-H groups with the solvent.     

Dependence of (35)Cl NQR on hydrogen bonding and temperature in dichlorophenol-aniline charge transfer complexes

The hydrogen-bonded charge transfer complexes of aniline with pi-acceptors (or proton donors) such as 2,5-, 2,6-, 3,4- and 3,5-dichlorophenol were prepared. The (35)Cl nuclear quadrupole resonance (NQR) frequencies of these charge transfer complexes in the temperature range 77-300 K were measured to ascertain the existence or otherwise of a phase transition upon complex formation. Further, the NQR frequency and asymmetry parameter of the electric field gradient at the site of quadrupole nucleus were used to estimate the chemical bond parameters, namely ionic bond, double bond character of the carbon-chlorine(C--Cl) bond and the percentage charge transfer between the donor-acceptor components in charge transfer complexes. The effect of hydrogen bonding and temperature on the charge transfer process is analysed.     

Formation of hydrogen-bonded chains between a strong base with guanidine-like character and phenols with various pKa values - an FT-IR study

The complexes formed by phenols with 1,3,4,6,7,8-hexahydro-1-methyl-2H-pyrimido[1,2-a]pyrimidine (mTBD), an N-base with guanidine-like character, were studied as a function of the pK_a of the phenols by FT-IR spectroscopy. The following phenols were used: 4-cyanophenol (4-CNPh), pentachlorophenol (PCP) and 2,6-dichloro-4-nitrophenol (DNPh). In the case of chloroform solutions of 1:1 mixtures of the phenols with MTBD the corresponding complexes are formed completely. With increasing acidity of the phenols the hydrogen bonds become increasingly asymmetrical. The OH … N ⁻O … H⁺N hydrogen bond in the 4-CNPh-MTBD complex shows large proton polarizability. In the other cases only the polar structure is realized. With increasing phenol MTBD ratio, the formation of chains with two phenol molecules is observed. With decreasing pK_a of the phenols the fluctuation is limited to the phenol-phenolate bond and finally, the phenol-protonated MTBD bond begins to dissociate. In acetonitrile solutions, N⁺H … O⁻ hydrogen bonds are observed in the case of the 1:1 mixture of 4-CNPh with MTBD. A weak continuum indicates the presence of homoconjugated phenol-phenolate bonds with large proton polarizability. In the case of 2:1 mixtures only protonated MTBD and homoconjugated phenol-phenolate bonds are observed, independent of the pK_a of the phenols. The results are discussed with regard to the proton pathway in bacteriorhodopsin.     

Synthesis of metal-hydrazone complexes and vapochromic behavior of their hydrogen-bonded proton-transfer assemblies

We synthesized and investigated a new series of metal-hydrazone complexes, including deprotonated [MX(mtbhp)] and protonated forms [MX(Hmtbhp)](ClO(4)) (M = Pd(2+), Pt(2+); X = Cl(-), Br(-); Hmtbhp = 2-(2-(2-(methylthio)benzylidene)hydrazinyl)pyridine) and hydrogen-bonded proton-transfer (HBPT) assemblies containing [PdBr(mtbhp)] and bromanilic acid (H(2)BA). The mtbhp hydrazone ligand acts as a tridentate SNN ligand and provides a high proton affinity. UV-vis spectroscopy revealed that these metal-hydrazone complexes follow a reversible protonation-deprotonation reaction ([MX(mtbhp)] + H(+) ? [MX(Hmtbhp)](+)), resulting in a remarkable color change from red to yellow. Reactions between proton acceptor [PdBr(mtbhp)] (A) and proton donor H(2)BA (D) afforded four types of HBPT assemblies with different D/A ratios: for D/A = 1:1, {[PdBr(Hmtbhp)](HBA)·Acetone} and {[PdBr(Hmtbhp)](HBA)·2(1,4-dioxane)}; for D/A = 1:2, [PdBr(Hmtbhp)](2)(BA); and for D/A = 3:2, {[PdBr(Hmtbhp)](2)(HBA)(2)(H(2)BA)·2Acetonitrile}. The proton donor gave at least one proton to the acceptor to form the hydrogen bonded A···D pair of [PdBr(Hmtbhp)](+)···HBA(-). The strength of the hydrogen bond in the pair depends on the kind of molecule bound to the free monoanionic bromanilate OH group. Low-temperature IR spectra (T < 150 K) showed that the hydrogen bond distance between [PdBr(Hmtbhp)](+) and bromanilate was short enough (ca. 2.58 ?) to induce proton migration in the [PdBr(Hmtbhp)](2)(BA) assembly in the solid state. The hydrogen bonds formed not only between [PdBr(Hmtbhp)](+) and HBA(-) but also between HBA(-) and neutral H(2)BA molecules in the {[PdBr(Hmtbhp)](2)(HBA)(2)(H(2)BA)·2Acetonitrile} assembly. The H(2)BA-based flexible hydrogen bond network and strong acidic host structure result in an interesting vapor adsorption ability and vapochromic behavior in this assembly because the vapor-induced rearrangement of the hydrogen bond network, accompanied by changes in π-π stacking interactions, provides a recognition ability of proton donating and accepting properties of the vapor molecule.     

GaCl(3)-catalyzed ortho-ethynylation of phenols

Phenols are ethynylated at the ortho position with silylated chloroethyne in the presence of a catalytic amount of GaCl3 and lithium phenoxide. The lithium salt is essential for the catalysis, and addition of 2,6-di(tert-butyl)-4-methylpyridine inhibits desilylation and hydration of the products. The reaction can be applied to various substituted phenols giving the ortho-ethynylated products in high yields, and the turnover numbers based on GaCl3 are between 8 and 10. The reaction mechanism involves addition of in situ formed phenoxygallium to the haloethyne followed by the elimination of GaCl3.     

NMR and quantum chemical studies on association of 2,6-bis(acylamino)pyridines with selected imides and 2,2′-dipyridylamine

Abstract  

Association constants of 2,6-bis(alkylcarbonylamino)pyridines (alkyl = methyl or ethyl) and their perfluoroalkyl analogues with succin- and maleimide as well as with 2,2′-dipyridylamine (complementary DAD and ADA hydrogen bonding motifs are responsible for formation of the associates) have been determined by NMR titrations and quantum chemical calculations. Interactions of 2,6-bis(alkylcarbonylamino)pyridines with imides differ by character from these of perfluoroalkyl analogues. Such large difference was not observed for the 2,2′-dipyridylamine associates. Since fluorine atoms cause carbonylamino groups to be stronger hydrogen bond donors, perfluorinated species of this type were found to be more stable. Single crystal X-ray structures of 2,6-bis(trifluoromethylcarbonylamino)pyridine and 2,6-bis(pentafluoroethylcarbonylamino)pyridine have been also determined.     

Unusual hydrate stabilization in the two‐dimensional layered structure of quinacrinium bis(2‐carboxy‐4,5‐dichlorobenzoate) tetrahydrate,a proton‐transfer compound of the drug quinacrine

The crystal structure of the hydrated proton‐transfer compound of the drug quinacrine [rac‐N′‐(6‐chloro‐2‐methoxyacridin‐9‐yl)‐N,N‐diethylpentane‐1,4‐diamine] with 4,5‐dichlorophthalic acid, C₂₃H₃₂ClN₃O²⁺·2C₈H₃Cl₂O₄⁻·4H₂O, has been determined at 200 K. The four labile water molecules of solvation in the structure form discrete ...O—H...O—H... hydrogen‐bonded chains parallel to the quinacrine side chain, the two N—H groups of which act as hydrogen‐bond donors for two of the water acceptor molecules. The other water molecules, as well as the acridinium H atom, also form hydrogen bonds with the two anion species and extend the structure into two‐dimensional sheets. Between these sheets there are also weak cation–anion and anion–anion π–π aromatic ring interactions. This structure represents the third example of a simple quinacrine derivative for which structural data are available but differs from the other two in that it is unstable in the X‐ray beam due to efflorescence, probably associated with the destruction of the unusual four‐membered water chain structures.