SARS 3CL蛋白酶同源二聚化与底物结合互为别构调控因素

研究了严重急性呼吸系统综合症(SARS)冠状病毒3C-Like蛋白酶(3CLpro)在存在底物或抑制剂时的二聚体形成情况. 通过测定酶活性随酶浓度的变化, 拟合出在底物存在下酶二聚体的解离常数约为0.94 μmol·L-1, 小于纯蛋白酶的二聚体解离常数(14.0 μmol·L-1), 表明底物对二聚体的形成具有增强作用. 选用与底物具有类似结合方式的靛红类抑制剂N-萘甲基靛红-5-甲酰胺(5f), 利用超速离心沉降速率方法定量测定了SARS 3CL蛋白酶单体和二聚体在不同浓度5f时的含量, 发现5f同样具有诱导二聚体形成的能力. 在3 μmol·L-1蛋白酶浓度下测定得到诱导二聚的EC50 值(半数有效浓度)约为1 μmol·L-1, 说明二聚体中只有一个单体与抑制剂结合. 研究结果表明, 随着底物浓度的升高, SARS 3CL蛋白酶会形成更多的二聚体, 而二聚体含量的提高又反过来提高酶的活性, 这种双向别构调控机制有可能是病毒用来调控多聚蛋白水解速率和组装时机的一种方法.     

作用于秋水仙碱位点的微管蛋白抑制剂的结合模式 研究与结构模型的构建

采用对接的方法建立了秋水仙碱位点抑制剂与微管蛋白的结合模式, 并构建了其结构模型. 结果表明: 抑制剂主要借助于与口袋I和II的疏水作用, 以及同α-Thr178, α-Val181和β-Cys241之间的氢键来实现与微管蛋白的结合. 根据抑制剂的结合构象, 将抑制剂的结构分为A, B以及AB间的桥连三个部分, 从而建立了由A部分中的疏水中心H1、氢键受体A1, B部分中的疏水中心H2、疏水基团H3和极性原子P以及桥连结构中的氢键受体A2组成的结构模型. 并指出H1与H2对活性的影响因素分别为疏水基团的体积和平面特征, 而桥连部分则应以刚性的形式保证AB处于桥连的同侧(即顺式构象). 还提出在A2与loop区之间存在一个的潜在氢键受体A3. 研究结果为设计新型小分子微管蛋白抑制剂提供指导.     

Bcl-2蛋白结合底物时的诱导契合及高效抑制剂的柔性对接研究

Bcl-2蛋白是目前抗肿瘤药物研究很具前景的新靶点. Bcl-2蛋白与底物作用的活性腔生理情况下是蛋白与蛋白作用接触面大而平坦, 与底物结合时发生明显的诱导契合. 通过分析和比较Bcl-2蛋白和其高同源的Bcl-x_L蛋白的自由状态及与底物复合时的9个相关三维结构模型, 明确了蛋白及活性腔的骨架结构特征, 活性腔内的重要位点和关键残基, 及它们结合底物时发生的诱导契合. 基于以上认识, 采用柔性对接的方法得到了高亲和力的小分子抑制剂与Bcl-2蛋白的合理结合模式, 为以后设计合成新型高效Bcl-2蛋白抑制剂打下了坚实基础.     

基于阳离子共轭聚合物比色检测HIV逆转录酶的RNase H活性

利用阳离子聚噻吩衍生物与单链DNA和杂合体DNA/RNA通过静电相结合时所产生的紫外吸收变化,建立了一种检测HIV逆转录酶(RT-HIV)的RNase H活性的方法。阳离子聚噻吩衍生物的紫外吸收最大波长位于短波385nm,与单链DNA结合会使聚噻吩衍生物的紫外吸收最大波长红移至525nm;而与杂合体DNA/RNA结合时对其紫外吸收最大波长几乎没有影响,当利用RT-HIV的核糖核酸酶RNase H活性水解掉杂合体中的RNA时,杂合体溶液又会使聚噻吩衍生物的紫外吸收最大波长发生红移。结果表明,紫外吸收最大波长变化明显,甚至直观用肉眼就可以观察到杂合体水解前后溶液颜色的变化。同时还测定了不同时间下RNase H酶水解杂合体中RNA的吸光度变化曲线,计算出了RNase H酶水解的动力学常数和最大初速度。     

HIV蛋白酶抑制剂——利迪链菌素的分子对接研究

用分子对接的方法, 对利迪链菌素的抗HIV蛋白酶活性进行了研究. 为了更准确地反映利迪链菌素分子与酶蛋白结合的情况, 充分考虑受体活性部位的柔性, 采用了FlexX(初步对接)和Flexidock(精确对接)分两步将配体与受体进行对接. 在初步对接中, 设计了不同的受体活性部位来考察是否有结合水分子参与抑制剂与酶的结合. 对一种作用方式已知的非肽类HIV蛋白酶抑制剂Aha006进行的对接研究显示, 分子模拟的结果与实际情况吻合得较好, 证明了本文所采用的方法的可靠性. 利迪链菌素与蛋白酶活性部位的对接结果显示, 配体分子与受体之间的结合没有结合水分子的参与, 两者通过5对氢键作用结合成为稳定的复合物. 利迪链菌素占据结合腔, 覆盖了蛋白酶的活性三联体Asp25-Thr26-Gly27, 从而起到抑制其生物活性的作用.     

人T细胞中核酸结合亲环素(hCyP33)与 poly(A)+RNA(mRNA)特异性结合

人亲环素33(human cyclophilin 33, hCyP 33)是1996年发现的一个蛋白质. 它由1个N-端的RNA结合团块、1个C-端的亲环素团块和两者之间的连接部分组成. RNA结合蛋白(RNA-binding protein, RBP)是参与真核生物RNA转录后剪接(splicing)、修饰(modification)和输送(transport)等功能的一类蛋白质. 亲环素具有肽脯氨酰顺反异构酶活性, 在蛋白质折叠、输送和相互作用过程中起着关键作用. 器官移植时使用的免疫抑制剂环胞菌素A (cyclosporin A, CsA)能与亲环素类蛋白质结合, 并抑制它们的酶活性. 但是同时具有这两种不同功能的亲环素33在细胞生理过程中到底起了什么作用, 至今尚不清楚. 用离子交换色谱法和亲和吸附的方法研究了人亲环素33与各种细胞RNA的结合特异性, 证实了人亲环素33只同具有poly(A)尾序列结构的mRNA, 即poly(A)⁺ RNA发生特异性结合.     

原癌蛋白KRas的表达和纯化及其与小分子抑制剂ZCL1688的分子对接分析

经过特殊设计的小分子抑制剂可共价结合KRas蛋白的催化结构域,从而抑制KRas与下游效应蛋白的结合.本研究采用镍柱亲和层析、酶切标签、凝胶过滤层析等步骤制备了高纯度的KRas催化结构域(氨基酸残基1-169)蛋白;等温滴定量热(ITC)实验证明了KRas蛋白通过K42残基与小分子抑制剂ZCL1688进行结合;通过分子对...     

长春碱与中心蛋白的结合及其对蛋白聚集性质的影响

通过光谱、等温滴定量热(ITC)以及分子对接等方法研究了八肋游仆虫中心蛋白N-端半分子(N-EoCen)与长春碱(Vin)之间的相互作用以及Vin对N-EoCen聚集性质的影响。结果表明,Vin可以与N-EoCen以摩尔比1∶1结合于N-EoCen的第一个EF-hand的F螺旋与第二个EF-hand的E、F螺旋之间,条件结合常数约为10⁴L/mol。复合物的形成是放热的过程,主要依靠静电作用与疏水作用。N-EoCen与Vin结合后,构象发生变化,α螺旋含量减少,N-EoCen与Tb³⁺结合能力减弱。最终使得N-EoCen的自聚集以及Tb³⁺诱导的聚集减弱。研究结果为蛋白聚集抑制剂的筛选以及相关药物的研发提供了参考和依据。     

人类谷胱甘肽硫转移酶家族等位基因蛋白B与抑制剂作用模型的理论研究

采用分子动力学模拟方法系统地研究了谷胱甘肽硫转移酶家族(Glutathione S-transferases,GSTs)的等位基因蛋白B(GSTP1*B)与抑制剂利尿酸(EA)以及EA的谷胱甘肽(GSH)共轭物EAG(I),EAG(O)的具体结合方式.抑制剂及其谷胱甘肽共轭物与蛋白的相互作用能计算结果及分子动力学轨迹的统计分析结果表明,GSTP1*B与EA的谷胱甘肽共轭物的结合能力优于其与EA的结合能力,Phe8,Arg13,Trp38和Tyr108是作用过程中的关键残基,对稳定抑制剂及其谷胱甘肽共轭物在GSTP1*B的G和H位点的构象具有重要的作用.通过对构象的统计分析发现,残基Phe8和Tyr108与GSTP1*B酶对抑制剂的选择性密切相关.     

HIV-1整合酶链转移抑制剂的3D-QSAR、分子对接和分子动力学模拟研究

为了获得高活性、结构新颖的整合酶链转移(INST)抑制剂,本文采用Co MFA和Co MSIA两种方法对32个萘啶类INST抑制剂进行了三维定量构效关系研究,并建立了相关模型,其交叉验证系数分别为q~2=0. 809和q~2=0. 816,拟合验证系数分别为r~2=0. 998和r~2=0. 981,表明所建立的模型是可靠的且具有一定的预测能力。利用分子对接探讨小分子化合物与INST蛋白的相互作用模式,结果表明,萘啶类化合物主要通过疏水作用和氢键作用与INSTIs蛋白结合。最后通过分子动力学模拟进一步验证对接结果发现,对接的结合模式与分子动力学模拟得到的结果是一致的。本研究获得的综合模型和推论可以为开发有效的HIV INSTIs提供重要的理论信息。     

Dichroism of absorption and polarization of phosphorescence of molecules of the closed form of nitrobenzospirothiopyran

The spectral-polarization characteristics of absorption and phosphorescence of molecules of the initial form of nitro-substituted indolinospirobenzothiopyran were studied in oriented polyethylene films and in solutions with different polarity. An oscillator model of the electron transitions responsible for the formation of absorption and luminescence spectra was suggested. It was established that the principal differences in the spectral and photophysical properties of the compound studied and its oxygen-containing analog are associated with the fact that the electronegativity of the S atom is lower than that of the O atom. Translated fromIzvestiya Akademii Nauk. Seriya Khimicheskaya, No. 6, pp. 1143–1146, June, 1997.     

非那雄胺合成工艺改进

非那雄胺能抑制5α-还原酶的活性,明显降低二氢睾酮水平,是一种治疗良性前列腺增生的有效药品。该合成工艺以甾烯酮酸为原料,将其与氯化亚砜反应,无须分离即与叔丁胺反应得17β-酰胺化合物,再氧化开环,环合,氢化,脱氢合成了非那雄胺。经元素分析、IR、1HNMR、13CNMR、MS分析表征了其结构。该法无须使用昂贵的2,2-二吡啶二硫化物和剧毒药品苯亚硒酸酐,且以乙酸铵代替氨气,降低了对设备的要求和腐蚀,更适用于工业生产。     

Determination of heats of detonation and influence of components of composite explosives on heats of detonation of high explosives

The heats of detonation of 20 simple high explosives and explosive mixtures were determined by means of an adiabatic detonation calorimeter designed by the authors. The results indicated that the performance of the instrument was reliable and the experimental data were very accurate. For explosive mixtures, there was a linear accumulative relationship between the heats of detonation of the explosive mixture and its components. Accordingly, the heats of detonation of explosive mixtures could be calculated directly from the heats of detonation of simple explosives and the characteristic heats of other components. The experiments showed that the gold or brass shell of the cylindrical charge could be substituted by a thick-walled porcelain shell, which had the advantage of cheapness.

     

Synthesis of phenolic components of Grains of Paradise

Two vanilloids, (5E)-8-(4-hydroxy-3-methoxyphenyl)oct-5-en-4-one (1) and 4-[3-hydroxydecyl]-2-methoxyphenol (2), isolated from the dried seeds of Grains of Paradise (Aframomum melegueta), were synthesized; the latter compound was made as the S-enantiomer and the material derived from the seeds was found to be a 1:1.7 mixture of the R and S isomers. The synthetic route used should allow the preparation of analogs having extended alkyl chains and consequently different lipophilicity, and 3, a homolog of 2, was also prepared.     

恶臭嗅辨实验室建设探讨

针对恶臭测试的环境影响问题,提出了解决的实例方案,并对方案的要点及优缺点进行讨论,此方案在实际操作中具有较好的效果。     

氯氧化镁生成热的研究

用氧化镁氯化镁水溶液制备了8水合氯氧化镁[nMg(OH)2·MgCl2·8H2O], 并测定了其在盐酸中的溶解热, 实验结果表明, 氯氧化镁溶解热与n值呈线性关系, 根据溶解热求出5Mg(OH)2·MgCl2·8H2O和3Mg(OH)2·MgCl2·8H2O的生成热分别为-7727.1和5888.1kJ·mol^1^-。     

Summary of development of the theory of stability of colloids and thin films

In this review, the research of the author in the field of colloidal systems is summarized. The factors influencing colloidal stability are systematized and analyzed. Examples are presented to illustrate the practical utilization of the theory of stability of colloids and thin films.This review was prepared on the basis of the works of the author, which were awarded the State Premium for 1991 in the field of science and technology, chemistry section.Institute of Physical Chemistry, Russian Academy of Sciences, 117915 Moscow. Translated from Izvestiya Akademii Nauk, Seriya Khimicheskaya, No. 8, pp. 1708–1717, August, 1992.     

Study of hydration of two cements of different strengths

Main hydration products of two cement pastes, i.e. CSH-gel, portlandite (P) (and specific surface S) were studied by static heating, and by SEM, TEM and XRD, as a function of cement strength (C-33 and C-43) hydration time (th) and subsequent hydration in water vapour.Total change in mass on hydration and air drying, M_o, increased with strength of cement paste and with hydration time. Content of water escaping at 110 to 220°C, defined as water bound with low energy, mainly interlayer and hydrate water, was independent on cement strength but its content increased with (th). Content of chemically bound (zeolitic) water in CSH-gel, escaping at 220-400°C, was slightly dependent on strength and increased with (th). It was possibly derived from the dehydroxylation of CSH-gel and AFm phase. Portlandite water, escaping at 400-500°C, was independent on cement strength and was higher on longer hydration. Large P crystals were formed in the weaker cement paste C-33. Smaller crystals were formed in C-43 but they increased with (th). Carbonate formated on contact with air (calcite, vaterite and aragonite), decomposed in cement at 600-700^oC. It was high in pastes C-33(1 month) and C-43(1 month), i.e. 5.7 and 3.3%, respectively; it was less than 1% after 6 hydration months (low sensitivity to carbonation) in agreement with the XRD study showing carbonates in the air dry paste (1month), and its absence on prolonged hydration (6 months) and on acetone treatment. Water vapour treatment of (6 months) pastes or wetting-drying increased this sensitivity.Nanosized P-crystals, detected by TEM, could contribute to the cement strength; carbonate was observed on the rims of gel clusters.This revised version was published online in November 2005 with corrections to the Cover Date.     

解决能源问题的新途径--光解水制氢的研究

面对日益枯竭的能源危机,氢能是一种洁净、最有前景的替代能源。目前在各种制氢的方法中光催化分解水制氢的研究最多,光解水过程中催化剂最关键,本文对利用太阳能光解水的途径、提高光催化反应效率以及光催化剂的开发研究进行了综述。