Are the radical centers in peptide radical cations mobile? The generation, tautomerism, and dissociation of isomeric alpha-carbon-centered triglycine radical cations in the gas phase

The mobility of the radical center in three isomeric triglycine radical cations[G(*)GG](+), [GG(*)G](+), and [GGG(*)](+) has been investigated theoretically via density functional theory (DFT) and experimentally via tandem mass spectrometry. These radical cations were generated by collision-induced dissociations (CIDs) of Cu(II)-containing ternary complexes that contain the tripeptides YGG, GYG, and GGY, respectively (G and Y are the glycine and tyrosine residues, respectively). Dissociative electron transfer within the complexes led to observation of [Y(*)GG](+), [GY(*)G](+), and [GGY(*)](+); CID resulted in cleavage of the tyrosine side chain as p-quinomethide, yielding [G(*)GG](+), [GG(*)G](+), and [GGG(*)](+), respectively. Interconversions between these isomeric triglycine radical cations have relatively high barriers (> or = 44.7 kcal/mol), in support of the thesis that isomerically pure [G(*)GG](+), [GG(*)G](+), and [GGG(*)](+) can be experimentally produced. This is to be contrasted with barriers < 17 kcal/mol that were encountered in the tautomerism of protonated triglycine [Rodriquez C. F. et al. J. Am. Chem. Soc. 2001, 123, 3006-3012]. The CID spectra of [G(*)GG](+), [GG(*)G](+), and [GGG(*)](+) were substantially different, providing experimental proof that initially these ions have distinct structures. DFT calculations showed that direct dissociations are competitive with interconversions followed by dissociation.     

Effect of magnesium cations on the activity and stability of β-galactosidases

It was shown that the presence of magnesium cations in the reaction mixture increases, approximately twofold, the activity of bacterial Escherichia coli and yeast Kluyveromyces lactis β-galactosidases but does not affect the activity of bovine liver and fungous Penicillium canescens β-galactosidases. The catalytic constants for E. coli and yeast K. lactis β-galactosidases in the presence of 0.01 M and in the absence of Mg²⁺ cations were determined (490 and 220 s^?1 and 59.8 and 37.4 s^?1, respectively). It was shown that the Michaelis constants for these two enzymes are higher in the presence of Mg²⁺ cations, that the thermal stability of E. coli and K. Lactis β-galactosidases is higher in the presence of 0.01 M Mg²⁺, and that the effective rate constants of thermal inactivation of the enzymes are two-to eightfold lower, depending on conditions, in the presence of Mg²⁺ cations. The maximum stabilizing effect of magnesium cations was observed at weak alkaline pH values (7.5–8.5).     

Oxidation potentials of α-aminoalkyl radicals: bond dissociation energies for related radical cations

α-aminoalkyl radicals were generated using modulated photolysis and were detected electrochemically; their oxidation potentials were used to estimate bond dissociation energies of radical cations in solution.     

Electron-capture induced dissociation of doubly charged dipeptides: on the neutral losses and N-Cα bond cleavages

Electron capture by doubly charged peptide cations leads to neutral losses in addition to N-C(α) bond cleavages that give c and z fragments. In this work we discuss the influence of amino acid sequence on hydrogen versus ammonia loss and the propensity for subsequent partial side-chain cleavage after ammonia loss to give w fragment ions. Experiments were done on two series of doubly protonated dipeptides, [XK+2H](2+) and [XR+2H](2+), where X is one of the twenty common amino acid residues, excluding aspartic acid (D), and K and R are lysine and arginine, respectively. While it was previously established that NH(3) is lost exclusively from the N-terminal ammonium group and not from side-chain ammonium groups, we find here that ammonia can be lost from guanidinium radicals as well. The ratio between H loss and NH(3) loss reveals some information on internal ionic hydrogen bonds and peptide conformation since proton sharing between the N-terminal ammonium group and a basic side chain decreases the probability for NH(3) loss due to a lower recombination energy and as a result reduced capture probability. The abundance of w ions was found to correlate with the reaction energy for their formation; highest yield was found for CK and lowest for AK and HK. The survival rate of charge-reduced species was higher for XR than for XK, which is likely linked to the formation of long-lived C(α) radicals in the latter case. The probability for N-C(α) bond cleavage is smaller on average for XR than for XK which indicates that hydrogen transfer from the ε-ammonium radical to the amide group triggers some of the cleavages, or is a result of the different distances between the amide group and the charges in XR and XK. Finally, our data support the previous concept that charge partitioning between c and z fragments can be explained by competition between the two fragments for the proton.     

Cα-Cβ and Cα-N bond cleavage in the dissociation of protonated N-benzyllactams: dissociative proton transfer and intramolecular proton-transport catalysis

In mass spectrometry of protonated N-benzylbutyrolactams, the added proton is initially localized on the carbonyl oxygen, which is the thermodynamically preferred protonation site. Upon collisional activation, dissociative proton transfer takes place leading to the occurrence of fragmentation reactions. The major fragmentations observed are the cleavages of C(α)-C(β) and C(α)-N bonds on the two sides of the methylene linker, which is different to the cleavage of the amide bond itself seen in most amide cases. Theoretical calculations and isotopic labeling experiments demonstrate that the phenyl ring regulates the proton transfer reactions. The proton directly migrates to the C(β) position via a 1,5-H shift leading to the efficient loss of benzene, while it stepwise migrates to the amide nitrogen resulting in the formation of a benzyl cation. The stepwise proton transfer is achieved via intramolecular proton-transport catalysis. The C(γ) position accepts the proton from the carbonyl oxygen via a 1,6-H shift, and then donates it to the amide nitrogen via a 1,4-H shift. The general 1,3-H shift from the carbonyl oxygen to the amide nitrogen can be excluded in this case due to its significant energy barrier. The substituent effects are also applied to explore the reaction mechanism, and it proves that both C(β) and C(γ) are involved in the dissociative proton transfer processes. For monosubstituted N-benzylbutyrolactams, the abundance ratios of the two competing product ions are well correlated with the nature of the substituents.     

C–F bond functionalizations of trifluoromethyl groups via radical intermediates

Selective functionalization of C–F bonds in trifluoromethyl groups has recently received a growing interest, as it offers atom-and step-economic pathways to access highly valuable mono-and difluoroalkylsubstituted organic molecules using simple and inexpensive trifluoromethyl sources as the starting materials. In this regard, impressive progress has been made on the defluorinative functionalization reactions that proceed via radical intermediates. Nevertheless, it is still a great challenge to p...     

N-Cα bond cleavage of the peptide backbone via hydrogen abstraction

The specific cleavage of N-C_α bonds on the peptide backbone to form the so-called ‘c’ and ‘z + 2’ products, which can be used for the rapid determination of protein amino-acid sequences, has been examined to clarify the mechanism(s) that occur during hydrogen abstraction induced by bombardment with 337-nm laser photons in matrix-assisted laser desorption/ionization (MALDI) method. Intramolecular hydrogen abstraction, which results from the hydrogen(s) on the C_α or C_β carbon, did not occur with a deuterium-labeled dodecapeptide. To confirm a proposition that intermolecular hydrogen abstraction occurs between the peptide and the MALDI matrix, a deuterium dodecapeptide embedded in a deuterium 2,5-dihydroxybenzoic acid matrix at a molar ratio of 1:7000 was analyzed. The resulting deuterium c product ions suggested that c ions form via intermolecular hydrogen abstraction, although the results obtained did not deny any other possibilities such as intramolecular transfer of labile hydrogen. A mechanism for the N-C_α bond cleavage has been proposed that the formation of hypervalent radical species and subsequent prompt bond cleavages occur. The proposed mechanism successfully rationalizes the formation of both the z + 2 and the c product ions.     

Interaction of a C-F bond with the π-system of a C═C bond or "head on" with a proximate C-H bond

We describe the synthesis and preliminary study of two molecules, in which a fluorine atom is positioned proximately above the π-orbitals of a C═C bond or else wherein a C-F bond interacts in a "head on" fashion with a proximate C-H bond. The spectroscopic characteristics of these unusual interactions are documented, X-ray crystallographic analyses are reported, and theoretical calculations are employed to support the observed spectroscopy.     

Effect of coexisting cations on the adsorption of cesium onto poly (β-cyclodextrin)/bentonite composite

A novel poly(β-cyclodextrin)/bentonite composite (β-CD/BNC) was successfully prepared through graft polymerisation by using ammonium persulphate–sodium bisulphate as initiators, and characterized by FT-IR and EDS. The equilibrium data fit Freundlich isotherm satisfactorily. Adsorption kinetic was fitted with pseudo-second-order. The maximum adsorption capacities for Cs⁺ by β-CD/BNC in absence and presence of Na⁺ and Mg²⁺ were 48.83 ± 0.35, 47.30 ± 0.28, and 42.52 ± 0.85 mg g^?1, respectively. Adsorption of Cs⁺ was suppressed by presence of Mg²⁺ more than Na⁺. β-CD/BNC had a higher affinity to Cs⁺ than Na⁺ and Mg²⁺. β-CD/BNC was an effective sorbent for the treatment cesium waste water.     

Oxidative addition of the Cα-Cβ bond in β-O-4 linkage of lignin to transition metals using a relativistic pseudopotential-based ccCA-ONIOM method

A multi-level multi-layer QM/QM method, the relativistic pseudopotential correlation-consistent composite approach within an ONIOM framework (rp-ccCA-ONIOM), was applied to study the oxidative addition of the C(α)-C(β) bond in an archetypal arylglycerol β-aryl ether (β-O-4 linkage) substructure of lignin to Ni, Cu, Pd and Pt transition metal atoms. The chemically active high-level layer is treated using the relativistic pseudopotential correlation-consistent composite approach (rp-ccCA), an efficient methodology designed to reproduce an accuracy that would be obtained using the more computationally demanding CCSD(T)/aug-cc-pCV∞Z-PP, albeit at a significantly reduced computational cost, while the low-level layer is computed using B3LYP/cc-pVTZ. The thermodynamic and kinetic feasibilities of the model reactions are reported in terms of enthalpies of reactions at 298 K (ΔH°(298)) and activation energies (ΔH-act). The results obtained from the rp-ccCA:B3LYP hybrid method are compared to the corresponding values using CCSD(T) and several density functionals including B3LYP, M06, M06 L, B2PLYP, mPWPLYP and B2GP-PLYP. The energetics of the oxidative addition of C?C bond in ethane to Ni, Cu, Pd and Pt atoms are also reported to demonstrate that the rp-ccCA method effectively reproduces the accuracy of the CCSD(T)/aug-cc-pCV∞Z method. Our results show that in the catalytic activation of the C(α)-C(β) bond of β-O-4, the use of platinum metal catalysts will lead to the most thermodynamically favored reaction with the lowest activation barrier.     

Effect of alkaline and alkaline–earth cations on the supercapacitor performance of MnO2 with various crystallographic structures

The electrochemical performances of the α-, γ-, and δ-MnO₂ with different crystallographic structures were systematically investigated in 0.5 mol/L Li₂SO₄, 0.5 mol/L Na₂SO₄, 1 mol/L Ca(NO₃)₂, and 1 mol/L?Mg(NO₃)₂ electrolytes. The results showed that the electrochemical performances of the manganese dioxides depended strongly on the crystallographic structures of MnO₂ as well as the cation in the electrolytes. Because the δ-MnO₂ consists with layers of structure and the interlayer separation is 7 Å, which is suitable for insertion/extraction of some alkaline and alkaline–earth cations, the δ-MnO₂ electrode showed the higher specific capacitance than that of α-MnO₂ and γ-MnO₂. We also found that the α-, γ-, and δ-MnO₂ electrodes in the Mg(NO₃)₂ electrolyte showed a higher specific capacitance, while all the α-, γ-, and δ-MnO₂ electrodes in the Li₂SO₄ electrolyte exhibited a better cycle life. The reason for the different behavior of Li⁺ and Mg²⁺ during the charge/discharge process can be ascribed to the charge effect of the cations in the electrolytes. The ex situ X-ray diffraction (XRD) and long-time cyclic voltammogram measurements were used to systematically study the energy storage mechanism of MnO₂-based electrodes. A progressive crystallinity loss of the materials is also observed upon potential cycling at the oxidized states. A reasonable charge/discharge mechanism is proposed in this work.     

Effect of antimicrobial peptide (AMP)–tethered stainless steel surfaces on the bacterial membrane

Bacterial colonization leading to biofilm formation on surfaces induces industry-related as well as health care–associated infections worldwide. Emerging antibiotic-resistant microbes and related persistent infections due to adherent biofilm formation on surfaces have urged the need of effective alternative solutions to eradicate prevailing problems. Antimicrobial peptides are considered as potential candidates with distinguished characteristics, namely, broad-spectrum antimicrobial activity, low propensity toward pathogen resistance, and low immune response. In this study, we immobilize an in-house–designed peptide, KLLLRLRKLLRR (KLR), using a 2-step functionalization strategy onto stainless steel (SS) surfaces. SS is amino-silanized using (3-aminopropyl) triethoxysilane followed by tethering of KLR on it via formation of the amide bond. KLR-coated SS surfaces show nearly 95–100% reduction in bacterial colonization in vitro as obtained from antibacterial susceptibility testing while being non-toxic to mammalian cells. The coating strategy does not affect the microstructure of the SS surfaces. These findings demonstrate that this tethering process is able to produce excellent antibacterial surfaces.     

Effect of pressure on the solubility of naphthalene in water at 25°C

Solubility of naphthalene in water was measured at 25°C and pressures up to 200 MPa. The solubility decreased with increasing pressure. From the pressure coefficient of the solubility, the volume change V accompanying the dissolution was estimated as 13.8±0.4 cm ³ -mol ^–1 . Further we estimated the volume change V _CH accompanying hydrophobic hydration as –0.1±0.6 cm ³ -mol ^–1 using the V value, the molar volume of crystalline naphthalene, and the partial molar volume of naphthalene in n-heptane. This V _CH is much larger (i.e., less negative) than that for hydrophobic hydration of alkyl-chain compounds and suggests that the hydration structure of naphthalene differs from that of alkyl-chain compounds.     

Photoinduced electron-transfer reaction of α-bromomethyl-substituted benzocyclic β-keto esters with amines: selective reaction pathways depending on the nature of the amine radical cations

Photoinduced electron-transfer reaction of α-bromomethyl-substituted benzocyclic β-keto esters with tertiary amines was investigated. Debrominated β-keto esters and ring-expanded γ-keto esters were obtained as major products. On the basis of mechanistic experiments it was concluded that these products are formed via a reaction sequence of selective carbon–bromine bond cleavage and subsequent competitive hydrogen abstraction and Dowd–Beckwith ring-expansion of the resulting primary alkyl radicals. The characteristic product distribution observed for the type of amine used is rationalized on the basis of selective reaction pathways of generated radical intermediates that depend on the nature of the amine radical cations.     

Mini-review on the functionalization of C–H bond to C-X linkage via metalla-electrocatalyzed tool

To date, the C–H activation protocol and its functionalization of bonds via transition metal have witnessed major attention in coordination chemistry as they eliminate the pre-functionalization of the substrate. Conventional approaches use a stoichiometric amount of chemical oxidants which are toxic under mild conditions. This will create a major problem in C–H functionalization reactions that involve a selective issue of reductive elimination from metal center to form a significant amount of by-product (waste) in large amount which is difficult to separate and thus reduce atom economy and sustainability of the reaction medium. This will limit catalyst turnover and thus, decreases the reaction rate. To avoid this, there is an urgent need for renewable resources which bring about the functionalization of the C–H bond. Metalla-electro catalyzed is the cleanest tool on the platform of C–H activation chemistry. Here, electricity was being involved as a clean surrogate of chemical oxidant and holds unleashed potential for an oxidative protocol of C–H activation with unmet site selectivity. This mini-review pay attention to the C–H functionalization of the bond to C–C, C–N, and C-Miscellaneous (P, O, and S) bond linkage by employing different transition metal {precious (Pd, Rh, Ru, and Ir)} and {earth-abundant (Mn, Ni, Co, and Cu)} using the electrochemical tool. Such metalla-electro catalyzed tools are helpful to those who were not being trained electrochemists but can unleash this potential benefit in various sustainable organic transformations.     

Gas phase substitution reactions by radical cations Part 5: Reaction of the CC ring-opened oxirane radical cation with 1,2-, 1,3- and 1,4-dichlorobenzene

Under conditions of chemical ionization in the high pressure source of a mass spectrometer, the α-distonic CC ring-opened oxirane radical cation transfers a methylene group to 1,2-, 1,3- and 1,4-dichlorobenzene. The structures of the M + 14]^·+ product ions have been established by collisionally induced dissociation of these ions compared with reference ions and application of principal component analysis. 1,2-Dichlorobenzene yields 80% 2-chlorobenzyl chloride, 5% 2,3-dichlorotoluene and 15% 3,4-dichlorotoluene. The [M + 14]^·+ ions from 1,3-dichlorobenzene are 64–67% 3-chlorobenzyl chloride, 27–28% 2,6-dichlorotoluene and 7% 2,4- or 3,5-dichlorotoluene. From 1,4-dichlorobenzene mainly 4-chlorobenzyl chloride is formed, together with some 2,5-dichlorotoluene. In this case there is also an unidentified contribution, probably by 1,4-dichlorocycloheptatriene ions. Possible formation of distonic product ions does not occur in the cases of 1,2- and 1,3-dichlorobenzene, and from 1,4-dichlorobenzene it is considered to be unlikely.