Primary photoprocesses of 3,3’-diethylthiacarbocyanine in the presence of cucurbit[7]uril: Laser flash photolysis and quantum chemical calculations

The effect of cucurbit[7]uril on the phototransformation of 3,3′-diethylthiacarbocyanine iodide dye in aqueous solution has been investigated by nanosecond laser flash photolysis. The presence of cucurbit[7]uril results in the formation of its complex with the dye molecule producing a dimer. The dimer formation is evident from the ground and triplet-triplet absorption spectra. The dimers in the triplet state are capable of electron transfer. The structure of the complexes is suggested on the basis of quantum chemical calculations.     

Study of electronic excitation energy transfer between cyanine dye molecules noncovalently bound to DNA

Electronic excitation energy transfer between molecules of carbocyanine dyes noncovalently bound to DNA was studied. 3,3′,9-Triethyl-5,5′-dimethyloxacarbocyanine iodide and 3,3′-dimethyl-9-ethyloxacarbocyanine iodide were used as energy donors, and 3,3′-diethylthiacarbocyanine iodide served as an acceptor dye. The fluorescence decay kinetics of the donors and its quenching by the acceptor in the presence of DNA were measured. The microphase model was used for interpretation of the experimental data, with allowance for concentrating dye molecules in the vicinity of DNA molecules.     

Electronic excitation energy transfer between molecules of carbocyanine dyes in complexes with DNA

Electronic excitation energy transfer has been carried out between molecules of carbocyanine dyes bound noncovalently to DNA. 3,3′,9-Triethyl-5,5′-dimethyloxacarbocyanine iodide was used as an energy donor and 3,3′-diethylthiacarbocyanine iodide as an acceptor dye. In this process, the band belonging to the donor is observed in the fluorescence excitation spectrum of the acceptor. Donor fluorescence quenching by the acceptor in the presence of DNA was studied. The results of the experiments are discussed in terms of the Dye-DNA stoichiometric complex formation and with respect to concentrating the dyes in the microphase (pseudophase) of the biopolymer.     

Spectral and fluorescent properties of cross-conjugated polyene ketones with terminalN-methylpyrrole residues

The spectral and fluorescent properties of a number of cross-conjugated ketones with one or two terminalN-methylpyrrole residues and those of polyene bis-ω, ω′-dimethylamino ketones with methyl substituents in the polyene chain and of some related compounds were studied. The photophysical properties of cross-conjugated ketones with terminalN-methylpyrrole residues are similar to those of the corresponding polyene bis-ω, ω′-dimethylamino ketones studied in detail previously. In both series of compounds, the absorption and fluorescence spectra undergo a bathochromic shift following an increase in the length of the polyene chains or introduction of α,α′-trimethylene or α,α′-dimethylene bridges into these chains; the same trend is observed on passing from less polar solvents to more polar solvents (positive solvatochromism). Thermochromism (long-wavelength shift of the absorption spectra upon cooling the solutions) is observed in both series of compounds. The introduction of methyl substituents into the polyene chains of bis-ω,ω′-dimethylamino ketones results in a decrease in the fluorescence quantum yield. Translated fromIzvestiya Akademii Nauk. Seriya Khimicheskaya, No. 7, pp. 1293–1298, July, 1999.     

An Absorption–Fluorescence Method for Estimation of the Efficiency of Nonradiative Relaxation of Cyanine Dyes

Within the framework of stationary optical spectroscopy, a method for estimation of nonradiative relaxation efficiency for the electronically excited state of a fluorophore is suggested using 3,3-diethylthiacarbocyanine iodide solutions in binary mixtures of toluene and dimethyl sulfoxide (DMSO) as an example. In particular, the quantum yield of dye photoisomerization was found to noticeably decrease upon reducing DMSO content in the mixture.     

The specific feature of photochemical processes in molecules of 3,3′-dialkylthiacarbocyanines in binary solvent mixtures

The effect of the composition of the dimethyl sulfoxide (DMSO)-toluene mixture on the photochemical processes of 3,3′-diethylthiacarbocyanine (DETCC) iodide and 3,3′-dimethylthiacarbocyanine (DMTCC) chloride was studied. In the mixtures with the DMSO content more than 20 vol %, DETCC iodide and DMTCC chloride molecules are characterized by a high efficiency of both trans → cis photoisomerization and fluorescence, in contrast to intersystem crossing to the triplet state. With decreasing the DMSO content to 3 vol %, the relative quantum yield of DETCC iodide intersystem crossing increases by two orders of magnitude, which is accompanied by a decrease in the lifetime of DETCC iodide triplet molecules from 1.1 × 10^?4 to 2.4 × 10^?7 s and a decrease in the yield of the cis-isomers. To explain the results, the concepts of “external heavy atom (iodide) effect” and hyperfine coupling (HFC mechanism) in radical pairs that could be formed via electron transfer between the iodide and an excited dye molecule were used.     

THE PHOTOPHYSICAL CONSTANTS OF SEVERAL FLUORESCENT DYES PERTAINING TO ULTRASENSITIVE FLUORESCENCE SPECTROSCOPY

Abstract— The successful implementation of ultrasensitive fluorescence spectroscopy of biological and chemical species depends upon certain photophysical parameters associated with the fluorescent dye used in the investigation. These parameters include the fluorescence quantum efficiency, photodestruction quantum efficiency, absorption cross section and fluorescence lifetime. These photophysical constants were measured for several fluorescent dyes that are used for the tagging of biological species. Three different solvents, ethanol, water and a cationic surfactant used above its critical micelle concentration, were studied. The effective photon yield (ratio of the fluorescence quantum yield to the photodestruction quantum efficiency) for the dyes is nearly 100 times greater in ethanol than it is in water because of the superior photostabilities of these dyes in ethanol solvents. The implications of these parameters for the design of an ultrasensitive fluorescence experiment are discussed.     

Investigation of the pathways of thermal fragmentation of thiacarbocyanine dyes

The pathways of the thermal transformations of thiacarbocyanines with various alkyl groups attached to the ring nitrogen atoms of the heteroresidues, of 3,3-diethylthiacarbocyanine with various anions, and its anhydro base were investigated. The results of the studies are compared with the results of quantumchemical calculations of the labilities of the bonds in these compounds by the Pariser-Parr-Pople method.Translated from Khimiya Geterotsiklicheskikh Soedinenii, No. 12, pp. 1626–1630, December, 1981.     

Palladium-catalyzed amination in the synthesis of polyazamacrocycles

The review describes palladium-catalyzed amination of acyclic di- and polyamines with aryl halides with a view to reveal general relations holding in this process. Conditions for the synthesis of macrocycles via catalytic diamination of 1,2- and 1,3-dibromobenzenes, 1,3-dichloro-2-bromobenzene, 2,6- and 3,5-dibromopyridines, 3,3′- and 4,4′-dibromobiphenyls, 2,7-dibromonaphthalene, 1,8- and 1,5-dichloroanthracene, 1,8- and 1,5-dichloroanthraquinones, and bis(haloaryl) derivatives of cyclen, cyclam, and cholanediol are discussed. The possibility for palladium-catalyzed arylation of cyclic polyamines has been demonstrated. Specificity of macrocyclization processes and relations between the yield of macrocycles and the nature of initial compounds are considered, and data on the synthesis of cyclic dimers are given. Applications of polyazamacroheterocycles as optical sensors for metal cations are described using as examples macrocyclic compounds derived from 1,8-disubstituted anthraquinone.     

Photochemical investigation of the triplet state of 3,3"-diethylthiacarbocyanine iodide in the presence of DNA

The spectral kinetic parameters of the triplet state of 3,3"-diethylthiacarbocyanine iodide (DTCI) in the presence of DNA were studied by pulse photolysis. The formation of DTCI complexes with DNA increases the quantum yield of the triplet state of the dye. Analysis of the absorption spectra of the ground and triplet states of DTCI at different DNA concentrations in a solution indicates the existence of two types of complexes. Complex formation decreases substantially the quenching rate constant of the triplet state of the dye by dioxygen.     

Triplet states of 3,3′-alkylsubstituted thiacarbocyanine dimers and dimeric complexes with cucurbit[8]uril in water

Alkylsubstituted thiacarbocyanines (3,3′-diethylthiacarbocyanine, D1, and 3,3′-disulfopropylthiacarbocyanine, D2), existing in water as monomers and dimers, manifest the ability to transition to the triplet state. The spectrum of triplet-triplet (T–T) absorption of the D2 dimers is shifted in the range higher than 590 nm by 20 nm to the red in comparison with the T–T spectrum of monomers. The D1 dimers in the presence of cucurbit[8]uril form a dimeric complex with two bands in the differential absorption spectrum. The band at 550 nm belongs to the triplet-triplet absorption of the dimeric complexes, and the band in the range of 620–700 nm is the result of charge transfer in the triplet state. The rate constants of deactivation for these triplet states coincide.     

Distribution of distances in donor-acceptor pairs of cyanine dyes upon electronic excitation energy transfer in the presence of DNA

Electronic excitation energy transfer (EEET) between molecules of carbocyanine dyes, which form noncovalent complexes with DNA, has been studied by picosecond spectroscopy. Three oxacarbocyanine dyes have been used as electronic excitation energy donors, and 3,3′-diethylthiacarbocyanine iodide has served as an acceptor dye. An analysis of the kinetic dependences permitted obtaining the data on distribution of the distances in donor-acceptor pairs upon EEET. The effect of the acceptor concentration on the parameters of distribution of its molecules in the quenching microphase has been revealed.     

PHOTOPHYSICAL PROPERTIES OF 3,3'-DIALKYLTHIACARBOCYANINE DYES IN HOMOGENEOUS SOLUTION

The photophysical properties of 3,3′-dialkylthiacarbocyanine iodides and chlorides were measured in various solvents. It was found that photoisomerization and fluorescence are the major contributors to the deactivation of the excited singlet state; intersystem crossing occurs with only a very low efficiency. In ethanol, a triplet yield of 0.004 and a singlet oxygen quantum yield of 0.002 were determined. The photophysical parameters of these dyes are not substantially influenced by the length of the alkyl chain or the size of the halide counterion. The substitution of an ethyl with an octadecyl-chain only slightly hinders photoisomerization, and the replacement of the chloride with an iodide reduces only marginally the fluorescence lifetimes and fluorescence quantum yields in chloroform. A significant external heavy-atom effect is observed using dibromoethane as a solvent: triplet and singlet oxygen yields increase7–10-fold, and the triplet lifetime decreases from 55 μs to 15 mUs.     

Stimulated fluorescence and fluorescence quenching in chlorophyll a and bacteriochlorophyll a

This communication deals with the photophysical processes that take place in chlorophyll solutions under intense nitrogen laser irradiation. The effect of the pump photon density on the fluorescence yield depends strongly on the geometry of the irradiation and the sampling set-up. If the fluorescence cell and sampling probe are placed close to the transverse arrangement used for obtaining laser output, line narrowing and gain, which are processes associated with high population inversions and stimulated fluorescence, are observed. A normal fluorescence spectrum and a decrease in fluorescence quantum yield with increasing pump power are observed in the fluorescence cells in oriented at an angle of 20–40° with respect to the transverse axis of the exciting beam. The decrease in quantum yield appears to result from absorption of the pump photons by the excited singlet of the chlorophylls, and it is suggested that an analogous mechanism may be responsible for the anomalous fluorescence quantum yield reported for in in vivo Chlorella vulgaris algae.     

Primary photoprocesses in molecules of carbocyanine dyes in binary solvent mixtures

The effect of the composition of the dimethyl sulfoxide (DMSO)-toluene mixture on the photophysical processes of thia-, indo-, and imidacarbocyanine dyes was studied. In the mixtures with the DMSO content of more than 20 vol %, the dyes representing solvated cations are characterized by high efficiency of trans → cis photoisomerization and fluorescence, in contrast to the extremely low efficiency of intersystem crossing to the triplet state. With growing the toluene content in the mixture, ion pairs between the dye cation and Cl⁻, Br⁻, I⁻, or BF⁴⁻ anion are formed. In the cases when the dye counterions are Br⁻ or I⁻, a sharp increase in the yield of the triplet molecules and a decrease in their lifetime take place. The results are discussed in terms of “the external heavy atom effect” in ion pairs.     

Photophysics of boron difluoride chelates with dihalogenated tetraphenyl-<Emphasis Type="Italic">ms</Emphasis>-azadipyrromethenes

Spectral, luminescent, and photophysical properties of the BF₂ chelates with dichloroand dibromotetraphenyl-ms-azadipyrromethene (derivatives of tetraphenyl-aza-BODIPY) have been studied experimentally and theoretically by quantum chemistry methods. The positions of fluorescence bands, quantum yields, and lifetimes were measured experimentally. The rate constants of intramolecular photophysical processes have been estimated, and the quantum yields of fluorescence and phosphorescence and the lifetimes of excited states have been calculated. Complete energy schemes of electronically excited states and photophysical processes in the molecules of the compounds under study have been built on the basis of calculation results. The decrease in the fluorescence quantum yields upon excitation into the second absorption band and the absence of the phosphorescence of the chelates have been explained.     

Photophysics of Glycosylated Derivatives of a Chlorin,Isobacteriochlorin and Bacteriochlorin for Photodynamic Theragnostics: Discovery of a Two‐photon‐absorbing Photosensitizer

The photophysical properties of a chlorin, isobacteriochlorin and bacteriochlorin built on a core tetrapentafluorophenylporphyrin (TPPF₂₀) and the nonhydrolyzable para thioglycosylated conjugates of these chromophores are presented. The photophysical characterization of these compounds was done in three different solvents to correlate with different environments in cells and tissues. Compared with TPPF₂₀ other dyes have greater absorption in the red region of the visible spectrum and greater fluorescence quantum yields. The excited state lifetimes are from 3 to 11 ns. The radiative and nonradiative rate constants for deactivation of the excited state were estimated from the fluorescence quantum yield and excited state lifetime. The data indicate that the bacteriochlorin has strong absorption bands near 730 nm and efficiently enters the triplet manifold. The isobacteriochlorin has a 40–70% fluorescence quantum yield depending on solvent, so it may be a good fluorescent tag. The isobacteriochlorins also display enhanced two‐photon absorption, thereby allowing the use of 860 nm light to excite the compound. While the two‐photon cross section of 25 GM units is not large, excitation of low chromophore concentrations can induce apoptosis. The glycosylated compounds accumulate in cancer cells and a head and neck squamous carcinoma xenograft tumor model in mice. These compounds are robust to photobleaching.     

Effect of TiO2 colloids on the fluorescence behavior of two cyanine dyes

The photophysical properties of two typical cyanine dyes [3,3'-diethyl-9-methyl-thiacarbocyanine iodide (dye A) and anhydro-3,3'-disulfopropyl-5,5'-diphenyl-9-ethyloxacarbocyanine hydroxide (dye B)] in the absence and presence of TiO(2) colloids have been investigated by UV-visible spectroscopy, (1)H-NMR spectroscopy, fluorescence spectroscopy, fluorescence lifetime measurements, and ESR measurements. It was found from the absorption spectra and NMR results that there are two isomers in the ground state of these dyes. Steady-state fluorescence spectra show that the fluorescence intensities of dye A and dye B are enhanced and quenched by TiO(2) colloids, respectively. Time-resolved fluorescence lifetime measurements indicate that the lifetimes of dye A and dye B in the presence of TiO(2) colloids are longer and shorter than those obtained in the absence of TiO(2) colloids, respectively. ESR measurements demonstrate that the electron transfer efficiency from (1)dye B* to the conduction band of TiO(2) is much larger than that from (1)dye A* to the conduction band of TiO(2). The different fluorescence behavior of dye A and dye B can be intepreted in terms of whether phi(Tr,nr)(0)-phi(Tr,nr) (the reduction of the quantum yield for radiationless transition in the excited singlet state (1)dye* caused by the TiO(2) colloids) is larger or smaller than phi(ET) (the quantum yield of electron transfer from (1)dye* to the conduction band of TiO(2) colloids).     

Study of cis-trans equilibrium of oxacarbocyanine dyes in solution and in a complex with DNA

Cis-trans equilibrium for a number of meso-substituted oxacarbocyanine dyes, 3,3′-diethyloxacarbocyanine iodide (K1), 3,3′-diethyl-9-methyloxacarbocyanine iodide (K2), 3,3′-dimethyl-9-ethyloxacarbocyanine iodide (K3), 3,3′,9-triethyl-6,6′-dimethoxyoxacarbocyanine iodide (K4), and 3,3′,9-triethyl-5,5′-dimethyloxacarbocyanine iodide (K5), has been studied in solutions and in a complex with DNA by spectral and fluorescent methods. A shift of the cis-trans isomer equilibrium toward the formation of the trans-isomer was observed in the presence of DNA, which determined in many respects the spectral effects observed upon the complexation of the oxacarbocyanine dyes. A steep rise of fluorescence (due to binding of the trans-isomer) in a complex with DNA is favorable for using oxacarbocyanine dyes to determine DNA.     

Synthesis, structures, and conductivities of salts (BEDT-TTF)[9,9′(12′)-I2-3,3′-Co(1,2-C2B9H10)2] and (TTF)[9,9′,12,12′-I4-3,3′-Co(1,2-C2B9H9)2]

The radical cation salts of tetrathiafulvalene (TTF) and bis(ethylenedithio)tetrathiafulvalene (BEDT-TTF) with iodo derivatives of cobalt bis(dicarbollide), (TTF)[9,9′,12,12′-I₄-3,3′-Co(1,2-C₂B₉H₉)₂] and (BEDT-TTF)[9,9′(12′)-I₂-3,3′-Co(1,2-C₂B₉H₁₀)₂], respectively, were synthesized and their crystal structures were determined. The introduction of iodine atoms into the lower rim of the dicarbollide ligands, unlike the substitution at the upper rim, leads to insignificant changes in the crystal structure and the conductivity of the radical cation salts compared to the analogous salts based on unsubstituted cobalt bis(dicarbollide).