Specific ion effects on the electrophoretic mobility of small,highly charged peptides: A modeling study

In this work, we use coarse‐grained modeling to study the free solution electrophoretic mobility of small highly charged peptides (lysine, arginine, and short oligos thereof (up to nonapeptides)) in NaCl and Na₂SO₄ aqueous solutions at neutral pH and room temperature. The experimental data are taken from the literature. A bead modeling methodology that treats the electrostatics at the level of the nonlinear Poisson Boltzmann equation developed previously in our laboratory is able to account for the mobility of all peptides in NaCl, but not Na₂SO₄. The peptide mobilities in Na₂SO₄ can be accounted for by including sulfate binding in the model and this is proposed as one possible explanation for the discrepancy. Oligo arginine peptides bind more sulfate than oligo lysines and sulfate binding increases with the oligo length.     

Effects of fixed-charge distribution and pH on the electrophoretic mobility of biological cells

The electrophoretic mobility of biological cells is investigated theoretically. In particular, the effects of the distribution of the charges in the surface layer and the pH of bulk liquid phase on the mobility of cells are examined. The former includes the fixed charges due to the dissociation of the functional groups and the charges due to the penetrated electrolyte ions. The present analysis extends previous results in that the fixed charges are distributed nonuniformly across the surface layer of a cell. It is found that the distribution of the fixed charges in the surface layer has a significant effect on its electrophoretic mobility. Thus, assuming that the fixed charges are homogeneously distributed in the surface layer of a cell may lead to a significant deviation.     

Effect of monosaccharide composition, glycosidic linkage position and anomericity on the electrophoretic mobility of labeled oligosaccharides

Fluorophore-assisted carbohydrate electrophoresis (FACE) is useful for separation and characterization of oligosaccharides from various sources and for comparing several samples at once. While characterizing fungal surface glycans by FACE we observed that samples and standards of the same mass did not comigrate as expected. Subsequent experiments showed that the samples did not contain contaminating sugars. Therefore, our observation suggested that glycan electrophoretic mobility is affected by factors in addition to molecular mass. This work assesses the contribution of monosaccharide composition, linkage position, and linkage anomericity to glycan mobility. Commercially available (and synthesized when available) bioses of known composition were derivatized with a charged fluorophore, and electrophoretic mobilities compared in a slab gel format. The results indicate that all three parameters mentioned above affect observed migration. Further, no migration patterns emerged to suggest a set of rules for assigning band identity based on mobility alone. These results emphasize the importance of including known, matched, standards to facilitate interpretation of FACE data.     

Effect of matrix chain length on the electrophoretic mobility of large linear and branched DNA in polymer solutions

We study the effect of matrix chain molecular weight Mw and concentration c on the electrophoretic mobility micro of large linear and star-like, branched DNA in polymer solutions. Polyethylene oxide (PEO) with narrow molecular weight distributions form the main focus of this study. For PEO concentrations ranging from one half the overlap concentration, c*, to 3c*, the effective drag coefficient, zeta is identical with (mu0/mu) - 1, satisfies the following approximate scaling relationship, zeta approximately cMw(0.7). Here, mu0 is the electrophoretic mobility in free solution. While the concentration dependence is consistent with predictions from the transient entanglement coupling (TEC) model, the molecular weight dependence is significantly weaker. Although a similar dependence of mobility on Mw can be predicted when nonentangling collisions are the dominant source of drag, a model based on these collisions alone cannot reproduce the experimental observations. We also find that the architecture of large DNA does not affect either the concentration dependence or molecular weight dependence of the electrophoretic mobility.     

Effect of pH on the electrophoretic mobility of a particle with a charge-regulated membrane in a general electrolyte solution

The electrophoretic motion of an entity comprised of a rigid, uncharged core covered by a charge-regulated membrane which simulates a biological cell, in a general a:b electrolyte solution is analyzed. The membrane carries a fixed charge which arises from the dissociation of the acidic functional group HA. We show that the higher the concentration of cations in the bulk liquid phase, the lower the absolute Donnan potential, _D, and the lower the concentration of functional group, N₀, the lower the _D. Also, the higher the pH, the higher the absolute electrical potential, and the greater the N₀, the lower the pH. The absolute mobility of a cell, μ, increases with pH, but decreases with the increase in the friction coefficient of the membrane phase, γ. For a fixed total number of HA, if γ is large, μ/μ_s is less than unity, μ_s being the mobility of the corresponding rigid particle, and it decreases with the thickness of membrane d, and the inverse is true if γ is small. For a medium γ, the variation of μ/μ_s as a function of d has a local maximum, and depending upon d, it can be either greater or less than unity.     

α,β-不饱和羰基化合物抗菌作用和机理的研究

采用全略微分重叠法对丁烯二酸及其酯类的量子化学参数进行了计算，并对该类化合物的分子结构特征与抗菌活性间的关系进行了相关分析．结果表明，丁烯二酸及其酯类抗菌活性依分子流水性能增强而提高，依分子内基团间作用力的增强而降低；随分子最低空轨道能量的降低，抗菌生物活性极显著上升（p＜0．01），抗代谢性能显著提高（p＜0．02）．α，β-不饱和羰基结构是该类化合物的抗菌功能域，其活性中心在β-碳和羰基氧。     

PS-TBD triggered general protocol for the synthesis of 4H-chromene,pyrano[4,3-b]pyran and pyrano[3,2-c]chromene derivatives of 1H-pyrazole and their biological activities

A general protocol has been developed for the facile construction of titled derivatives via three component reaction between 3-substituted phenyl-1H-pyrazole-4-carbaldehyde, malononitrile and various Michael donors in presence of 5 mol% polystyrene supported 7-methyl-1,5,7-triazabicyclo[4.4.0]dec-5-ene(PS-TBD). PS-TBD was reused for at least five runs with nearly constant catalytic activity. All compounds were screened for antimicrobial and antioxidant activities.     

Effect of doping activated carbon based Ricinodendron Heudelotti shells with AgNPs on the adsorption of indigo carmine and its antibacterial properties

Two adsorbents samples namely ZnCl₂ Activated carbon (ACZ); and a composite from ACZ doped with silver nanoparticles (ACZ/AgNP) made by successful precipitation loading onto ACZ and silver nanoparticles of the Recinodendron heudelotti shells aqueouse extract (RHSNP) were prepared. The ACZ and ACZ/AgNP materials were characterised by scanning electron microscopy (SEM), Energy dispersive X-ray (EDX), Fourier Transform Infra-Red (FTIR) spectroscopy, X-ray diffraction (XRD) and particle size by Zeta sizer. The antibacterial activities of ACZ, ACZ/AgNP the RHSNP and the RHS extract was done by the broth microdilution test on Shigella flexneri, Salmonella typhi and Escherichia coli species. Futhermore, the adsorption capacities of the ACZ and the ACZ/AgNP was investigated using the hazardous Indigo Carmine (IC) dye. The SEM results shows spongy rock-like surface on both adsorbents (ACZ and ACZ/AgNP) with the presence of pores, EDX and XRD shows the presence of crystalline zincite on ACZ and Ag on the ACZ/AgNP. The FTIR spectral for both adsorbents preseumes a composite material while the zeta sizer shows that all the materials samples prepared were in the nano-range. The extract and ACZ showed no antimicrobial activities while the antimicrobial properties were proven to be very interesting for the nanoparticles and the ACZ/AgNP but higher for the ACZ/AgNP (7.812 ≤ MIC ≤ 31.25 µg/ml). The adsorption capacities of IC were found to decrease by 33.15% respectively using the maximum concentration at equilibrium. RHS is therefore a good and promising precursor for the preparation of activated carbon and nanoparticles for bacterial containing water purification and for the treatment of bacterial infections.     

Effect of polyethylene oxide on the viscosity of dispersions of charged silica particles: interplay between rheology, adsorption, and surface charge

In this study a systematic investigation on the adsorption of polyethylene oxide (PEO) onto the surface of silica particles and the viscosity behavior of concentrated dispersions of silica particles with adsorbed PEO has been performed. The variation of shear viscosity with the adsorbed layer density, concentration of free polymer in the solution (depletion forces), polymer molecular weight, and adsorbed layer thickness at different salt concentrations (range of the electrostatic repulsion between particles) is presented and discussed. Adsorption and rheological studies were performed on suspensions of silica particles dispersed in solutions of 10⁻² M and 10⁻⁴ M NaNO₃ containing PEO of molecular weights 7,500 and 18,500 of different concentrations. Adsorption measurements gave evidence of a primary plateau in the adsorption density of 7,500 MW PEO at an electrolyte concentration of 10⁻² M NaNO₃. Results indicate that the range of the electrostatic repulsion between the suspended particles affects both adsorption density of the polymer onto the surface of the particles and the viscosity behavior of the system. The adsorbed layer thickness was estimated from the values of zeta potential in the presence and absence of the polymer and was found to decrease with decreasing the range of the electrostatic repulsive forces between the particles. Experimental results show that even though there is a direct relation between the viscosity of the suspension and the adsorption density of the polymer onto the surface of the particles, variation of viscosity with adsorption density, equilibrium concentration of the polymer, and range of the electrostatic repulsion cannot be explained just in term of the effective volume fraction of the particles and needs to be further investigated. Received: 15 February 2000/Accepted: 26 June 2000     

Effect of amino,hydroxyl, and carboxyl terminal groups of alkyl chains of self-assembled monolayers on the adsorption pattern of gold nanoparticles

The adsorption pattern of gold nanoparticles (AuNPs) on functionalized self-assembled monolayers (SAMs) produced on a Au(111) surface was characterized. The Au(111) was modified with 11-amino-1-undecanethiol hydrochloride (AUT), 11-mercapto-1-undecanol (MUT), or 11-mercaptoundecanoic acid (MUA) at an elevated temperature and pressure. The AuNPs aggregated on the AUT-SAM surface, whereas they were well dispersed on the MUT-SAM surface and localized on the MUA-SAM surface. The results suggest that interactions between AuNPs differ according to the degree of peeling of citrate-layer-capped AuNPs. The degree of peeling, which is related to both the surface randomness of the SAMs and the functional characteristics of the terminal group of each SAM, was discussed on the basis of scanning tunneling microscopy observations, X-ray photoelectron spectroscopic analyses, and contact angle measurements. Our study shows that AuNP patterns can be controlled by changing the terminal group of the alkyl thiol SAM on a Au(111) surface.     

Design,synthesis and herbicidal activities of novel self-dispreading phenoxy carboxylic acid derivatives for the control of water hyacinth floating on the water surface

A series of novel self-dispreading phenoxy carboxylic acid derivatives were designed and synthesized by I2 catalyzed one-step reaction. Their structures were confirmed by IR, NMR, and HRMS. The derivatives can self-spread and float on the water surface. Preliminary bioassays showed that some compounds, 3i–3p, had excellent herbicidal activities against water hyacinth. This strategy provided a novel approach for the water hyacinth control.     

A computational investigation on the geometries,stabilities, antioxidant activity,and the substituent effects of the L‐ascorbic acid and their derivatives

The geometries, stabilities, and antioxidant activities of L‐Ascorbic acid (1a), D‐erythroascorbate (2a), and D‐erythroascorbate glucoside (3a) as well as their sulfur and selenium derivatives are systematically investigated by using density functional theory. Emphasis is placed on studies of the two main mechanisms, that is, hydrogen atom donation and single‐electron transfer, and the O—H bond dissociation enthalpy and the ionization potential are computed in the gas phase and water solution. The calculated results indicate that the 2‐OH group in the five‐membered ring acts as an important H atom donor to free radicals. The 2‐OH radical spin density distribution shows that the unpaired electron is mostly located at the C3 atom of the five‐membered ring and partially at the vicinal O atoms, proving that a certain delocalization of the odd electron is effective in the five‐membered ring. In water aqueous solution, the antioxidant capacity and the electron donating ability are increased as the O atom in the five‐membered ring of 1a, 2a, and 3a is replaced by S and Se, respectively, in good agreement with experimental measurements; Furthermore, their antioxidant capacities are enhanced as compared with the standard antioxidant (resveratrol). © 2013 Wiley Periodicals, Inc.     

Effect of solvent on the construction of Co(II) coordination polymers containing a semi-rigid bis(benzimidazole) derivative: syntheses,structures, and properties

Two Co(II) coordination polymers, [CoL(npa)]·2H₂O (1) and [CoL(Hnpa)₂] (2) (L = 1,4-bis(5,6-dimethylbenzimidazole-1-yl)benzene, H₂npa = 5-nitroisophthalic acid), have been synthesized in different solvent systems and characterized by Infrared (IR) spectroscopy, elemental analysis, and powder and single crystal X-ray diffraction. Compound 1 was synthesized under solvothermal conditions with DMF as solvent and had a pair of L ligands adopting a μ₂-bridging mode and connecting two Co²⁺ cations to generate a 26-membered Co₂L₂ loop. The npa^2? link adjacent Co₂L₂ loops via a bis(monodentate) bridging mode to create a 1-D channel-like chain structure. Compound 2 was obtained under hydrothermal conditions, and the carboxylate of the monodeprotonated Hnpa^? adopt a μ₁-η^0?:?η¹ coordination to connect adjacent Co²⁺ cations into a 2-D polymeric layer. The μ₂-bridging L ligands connect adjacent 2-D [Co(Hnpa)]_n polymeric layers into a 3-D NaCl-like framework. The Co²⁺ cations and the L ligands in compounds 1 and 2 exhibit different coordination geometries and conformations. Effects of solvents on the construction of Co(II) coordination polymers were investigated. In addition, the electrochemical behavior of carbon paste electrodes containing 1 and 2 and the thermal stabilities of 1 and 2 were investigated.     

Drug discovery based on the structure of FKBP12: Design, synthesis and evaluation of L-1,4-thiazane-3-carboxylic acid derivatives as neuroimmunophilin ligands

By choosing neuroimmunophilin FKBP12 as a therapeutical target, we have attempted to discover a new structural drug for treating neurodegenerative disease. This drug should possess neurotrophic activity and not affect the immune system. Based on the crystal structure of FKBP12, FK506 and Calcineurin complex, a series of small organic molecules were designed. These molecules were to have the ability of binding to FKBP12 in a virtual screening. By using a solution parallel synthetic method, these compounds were synthesized. The neuroprotective and neuroregenerative activities of these compounds were evaluated by binding assays, PC12 cells survival and neurite outgrowth model, chick dorsal root ganglion cultures (DRG) and 6-OHDA lesioned mice sympathetic nerve endings model. The evaluation results of these compounds showed that compound N308 has great promise as a candidate for a neuroprotective and neuroregenerative agent.     

Effect of Inoculated Lactic Acid Fermentation on the Fermentable Saccharides and Polyols,Polyphenols and Antioxidant Activity Changes in Wheat Sourdough

Inoculation of sourdough allows the fermentation medium to be dominated by desired microorganisms, which enables determining the kinetics of the conversion of chemical compounds by individual microorganisms. This knowledge may allow the design of functional food products with health features dedicated to consumers with special needs. The aim of the study was to assess the dynamics of transformations of fermentable oligosaccharide, disaccharide, monosaccharide and polyol (FODMAP) compounds from wheat flour as well as their antioxidant activity during inoculated and spontaneous sourdough fermentation. The FODMAP content in grain products was determined by the fructan content with negligible amounts of sugars and polyols. To produce a low-FODMAP cereal product, the fermentation time is essential. The 72 h fermentation time of L. plantarum-inoculated sourdough reduced the FODMAP content by 91%. The sourdough fermentation time of at least 72 h also positively influenced the content of polyphenols and antioxidant activity, regardless of the type of fermentation. The inoculation of both L. plantarum and L. casei contributed to a similar degree to the reduction in FODMAP in sourdough compared to spontaneous fermentation.     

Synthesis,spectroscopic characterization and study the effect of gamma irradiation on VO2+, Mn2+, Zn2+, Ru3+, Pd2+, Ag+ and Hg2+ complexes and antibacterial activities

Novel complexes of VO²⁺, Mn²⁺, Zn²⁺, Ru³⁺, Pd²⁺, Ag⁺ and Hg²⁺ have been prepared by reacting their metal salts with ligand, named (4-(4-chlorophenyl)-1-(2-(phenylamino) acetyl) thiosemicarbazone). Study of synthesized metal complexes was confirmed by different analytical and spectral techniques (¹H NMR, MS, FT-IR, UV–Vis, EPR and Powder X-ray diffraction), thermogravimetric studies as well as molecular modeling. FT-IR spectra showed that the compound behave as neutral or monobasic tetradentate. In case of complexes of Mn²⁺, Zn²⁺, Ag⁺ and VO²⁺, through (N2H), (CO) or (CO) groups. While, the ligand behave as neutral bidentate in case of complexes with Pd²⁺ and Hg²⁺. X-ray diffraction pattern of Mn²⁺, Pd²⁺ and Ag⁺ complexes before and after irradiation are recorded. XRD studies exhibited that decrease in the crystalline size of sample Mn²⁺ as compared of samples Ag⁺ and Pd²⁺ upon irradiation and irradiation influenced the crystallinity of the complexes. The possible structures of the ligand, Mn²⁺, Pd²⁺ and Hg²⁺complexes have been computed by means of the molecular mechanic calculations using the hyper chem. 8.03 molecular modeling program. The bond length, bond angle, HOMO, LUMO and dipole moment have been studied to verify the geometry of Mn²⁺, Pd²⁺ and Hg²⁺ complexes. The effect of gamma irradiation was investigated by recording the new results of pervious spectroscopic techniques and other measurements. Thermal studies of these chelates before and after γ-irradiation showed that the complexes after γ-irradiation were more thermally stable than before γ-irradiation. The compound and its metal complexes have been experienced for their inhibitory outcome on the growth of microorganisms against gram positive and gram negative. The results proved that the complexes B₁–B₇ have potent antibacterial activity as compared to that of ligand.     

Drug discovery based on the structure of FKBP12: Design,synthesis and evaluation of <Emphasis Type="Italic">L</Emphasis>-1,4-thiazane-3-carboxylic acid derivatives as neuroimmunophilin ligands

By choosing neuroimmunophilin FKBP12 as a therapeutical target, we have attempted to discover a new structural drug for treating neurodegenerative disease. This drug should possess neurotrophic activity and not affect the immune system. Based on the crystal structure of FKBP12, FK506 and Calcineurin complex, a series of small organic molecules were designed. These molecules were to have the ability of binding to FKBP12 in a virtual screening. By using a solution parallel synthetic method, these compounds were synthesized. The neuroprotective and neuroregenerative activities of these compounds were evaluated by binding assays, PC12 cells survival and neurite outgrowth model, chick dorsal root ganglion cultures (DRG) and 6-OHDA lesioned mice sympathetic nerve endings model. The evaluation results of these compounds showed that compound N308 has great promise as a candidate for a neuroprotective and neuroregenerative agent. Supported by the National Basic Research Program of China (Grant No. G1998051107) and Hi-tech Research and Development Program of China (Grant No. 2002AA233051)