Constituents of Crinoidea, 4. Isolation and structure of ceramides and glucocerebrosides from the feather star Comanthus japonica

Five ceramides, JC-1-JC-5, and four glucocerebrosides, JCer-1-JCer-4, have been isolated from their parent ceramide and glucocerebroside molecular species JC and JCer obtained from the less polar lipid fraction of the chloroform/methanol extract of the feather star Comanthus japonica. The structures of these sphingolipids have been determined on the basis of chemical and spectroscopic evidence. Reversed-phase HPLC was effective at isolating these sphingolipids, revealing very close resemblance in their structures. JC-1, JC-3, JC-4, JC-5 and JCer-2, JCer-4 are newly found ceramides and glucocerebrosides, respectively.     

Constituents of Holothuroidea, 15. Isolation of ante-iso type regio-isomer on long chain base moiety of glucocerebroside from the sea cucumber Holothuria leucospilota

An ante-iso type regio-isomer on the long chain base moiety of a glucocerebroside, HLC-2-A, has been isolated from its parent glucocerebroside molecular species HLC-2 composed of iso and ante-iso isomers, from the less polar lipid fraction of a chloroform/methanol extract of the sea cucumber Holothuria leucospilota. Reverse-phase HPLC that included a recycling system was effective in separating the regio-isomer from its counterpart, revealing a very close resemblance in structure. Other typical glucocerebroside molecular species HLC-1 and HLC-3 were obtained together with HLC-2. The structures of these glucocerebrosides were determined on the basis of chemical and spectroscopic evidence.     

Constituents of holothuroidea, 14. Isolation and structure of new glucocerebroside molecular species from the sea cucumber Stichopus japonicus

Five glucocerebroside molecular species, SJC-1-SJC-5, have been isolated from the less polar lipid fraction of a chloroform/methanol extract of the sea cucumber Stichopus japonicus. The structures of these glucocerebroside molecular species were determined on the basis of chemical and spectroscopic evidence. SJC-1, SJC-2, and SJC-3 are typical sphingosine- and phytosphingosine-type glucocerebroside molecular species with nonhydroxylated and hydroxylated fatty acyl moieties. SJC-4 and SJC-5 are also sphingosine-type glucocerebroside molecular species with hydroxylated fatty acyl moieties, although they are new glucocerebroside molecular species with unique sphingosine bases.     

Biologically active glycosides from Asteroidea, 41. Isolation and structure determination of glucocerebrosides from the starfish Linckia laevigata

A new glucocerebroside, linckiacerebroside A (1) and a known glucocerebroside S-2a-3 (2), have been isolated from the cerebroside molecular species obtained from the less polar fraction of the CHCl3/MeOH extract of the starfish Linckia laevigata, together with three pseudo homogeneous glucocerebroside, 3, 4, and 5. The structures of these cerebrosides were determined on the basis of chemical and spectroscopic evidence.     

Isolation and structure determination of six glucocerebrosides from the starfish Luidia maculata

Two new glucocerebrosides, luidiacerebroside A (2) and B (6), were isolated from the cerebroside molecular species obtained from the less polar fraction of the CHCl3/MeOH extract of the starfish Luidia maculata using HPLC. Four known cerebrosides, CE-2b (1), astrocerebroside B (3), acanthacerebroside B (4), and CE-3-2 (5) have also been isolated and characterized. The structures of these cerebrosides were determined on the basis of chemical and spectroscopic evidence. Mass spectrometry of dimethyl disulfide derivatives was useful for the determination of the double-bond position in the long-chain base.     

Phase behaviour of aqueous hydroxypropylcellulose mesophase mixtures: Molecular weight considerations

As a self-organizing macromolecule, hydroxypropylcellulose serves as an excellent candidate for studies of complex polymer mixtures. In this work, we examine aqueous mixtures composed of two hydroxypropylcellulose grades, Klucel-F (HPC) and Klucel-H (HHPC), with molecular weights of 10 5 and 10 6 g mol - 1, respectively. Polarized light microscopy and deuterium nuclear magnetic resonance have been utilized to ascertain changes in the chiral nematic mesophase of HPC upon addition of 15 wt% HHPC. Results obtained here suggest that the HHPC either disrupts the molecular organization of the HPC mesophase, or induces immiscibility and partitions between HPC- and HHPC-rich phases.     

Isolation and structure of monomethylated GM3-type ganglioside molecular species from the starfish Luidia maculata

Two monomethylated GM(3)-Type ganglioside molecular species, 1 and 2, have been obtained from the polar lipid fraction of the chloroform/methanol extract of the starfish Luidia maculata. The structures of these gangliosides have been determined on the basis of chemical and spectroscopic evidence as 1-O-[8-O-methyl-(N-acetyl-alpha-D-neuraminosyl)-(2-->3)-beta-D-galactopyranosyl-(1-->4)-beta-D-glucopyranosyl]-ceramide (1) and 1-O-[8-O-methyl-(N-glycolyl-alpha-D-neuraminosyl)-(2-->3)-beta-D-galactopyranosyl-(1-->4)-beta-D-glucopyranosyl]-ceramide (2). The ceramide moieties were composed of heterogeneous unsubstituted fatty acid, 2-hydroxy fatty acid, sphingosine and phytosphingosine units. Compound 1, designated as LMG-3, represents new ganglioside molecular species. Compound 2 was a known ganglioside molecular species.     

Constituents of holothuroidea. 10. Isolation and structure of a biologically active ganglioside molecular species from the sea cucumber Holothuria leucospilota

Three ganglioside molecular species, HLG-1 (1), HLG-2 (2), and HLG-3 (3) have been obtained from the lipid fraction of the chloroform/methanol extract of the sea cucumber Holothuria leucospilota. The structures of these gangliosides have been determined, on the basis of chemical and spectroscopic evidence, as 1-O-[(N-glycolyl-alpha-D-neuraminosyl)-(2-->6)-beta-D-glucopyranosyl]-ceramide (1), 1-O-[(N-glycolyl-alpha-D-neuraminosyl)-(2-->4)-(N-acetyl-alpha-D-neuraminosyl)-(2-->6)-beta-D-glucopyranosyl]-ceramide (2) and 1-O-[alpha-L-fucopyranosyl-(1-->11)-(N-glycolyl-alpha-D-neuraminosyl)-neuraminosyl)-(2-->4)-(N-aetyl-alpha-D-neuraminosyl)-(2-->6)-beta-D-glucopyranosyl]-ceramide (3). The ceramide moieties were composed of heterogeneous phytosphingosine, sphingosine and 2-hydroxy fatty acid units. Compounds 2 and 3 represent new ganglioside molecular species. These three ganglioside molecular species showed neuritogenic activity toward the rat pheochromocytoma cell line, PC-12 cell, in the presence of NGF (nerve growth factor).     

Constituents of holothuroidea, 16. Determination of Absolute configuration of the branched methyl group in ante-iso type side chain moiety on long chain base of glucocerebroside from the sea cucumber Holothuria leucospilota

The absolute configuration of the branched methyl group in ante-iso type side chain moiety on the long chain base of glucocerebroside, HLC-2-A, which was isolated from the sea cucumber Holothuria leucospilota was determined. Oxidation of the glucocerebroside with ozone afforded C13-fragment including the ante-iso moiety. The optically active C13-fragment was synthesized asymmetrically by using the Wittig reaction from chiral synton for comparison with the natural fragment.     

Modeling the decomposition mechanism of artemisinin

A theoretical study on artemisinin decomposition mechanisms is reported. The calculations have been done at the HF/3-21G and B3LYP/6-31G(d,p) theoretical levels, by using 6,7,8-trioxybicyclo[3.2.2]nonane as the molecular model for artemisinin, and a hydrogen atom, modeling the single electron transfer from heme or Fe(II) in the highly acidic parasite's food vacuole, as inductor of the initial peroxide bond cleavage. All relevant stationary points have been characterized, and the appearance of the final products can be explained in a satisfactory way. Several intermediates and radicals have been found as relatively stable species, thus giving support to the current hypothesis that some of these species can be responsible for the antimalarial action of artemisinin and its derivatives.     

Constituents of ophiuroidea. 1. Isolation and structure of three ganglioside molecular species from the brittle star Ophiocoma scolopendrina.

Three ganglioside molecular species, OSG-0 (1), OSG-1 (2), and OSG-2 (3) have been obtained from the polar lipid fraction of the chloroform/methanol extract of the brittle star Ophiocoma scolopendrina. The structures of these gangliosides have been determined on the basis of chemical and spectroscopic evidence as 1-O-[(N-glycolyl-alpha-D-neuraminosyl)-(2-->6)-beta-D-glucopyranosyl]-ceramide (1), 1-O-[8-O-sulfo-(N-acetyl-alpha-D-neuraminosyl)-(2-->6)-beta-D-glucopyranosyll-ceramide (2) and 1-O-[(N-glycolyl-alpha-D-neuraminosyl)-(2-->8)-(N-acetyl- and N-glycolyl-alpha-D-neuraminosyl)-(2-->6)-beta-D-glucopyranosyl]-ceramide (3). The ceramide moieties were composed of heterogeneous unsubstituted fatty acid, 2-hydroxy fatty acid and phytosphingosine units. Compounds 2 and 3 represent new ganglioside molecular species.     

The structure of furan reaction products on Pd(111)

Previous experimental studies of the interaction of molecular furan, C(4)H(4)O, with Pd(111) have led to the conclusion that partial dissociation leads to two coadsorbed reaction products, CO and a C(3)H(3) species. Using density functional theory (DFT), a range of possible molecular conformation and adsorption sites of the C(3)H(3) species have been explored and the lowest energy structures, and associated C 1s photoelectron core-level binding energy shifts (CLSs), have been determined. Comparison of these CLS values with published experimental measurements allows one possible conformation to be rejected. New simulations of the C 1s scanned-energy mode photoelectron diffraction (PhD) spectra for several of lowest-energy structures found in DFT are compared with the results of an earlier experimental study. The lowest energy structure found in DFT is not consistent with the PhD data, suggesting that energy barriers to achieve the associated conformation cannot be overcome in the dissociation process. Through consideration of the results of both methods, the most probable surface structures are discussed.     

Molecular composition of cottonseed phosphatidylcholines

Summary The diglyceride and monoacetyldiglyceride derivatives of the phosphatidylcholines of the seed kernels of the cotton plant of variety S-6029 have been separated into individual subfractions in a thin layer of silica gel impregnated with silver nitrate.The total fatty-acid compositions of the individual subfractions and the position distributions of the fatty acids in the glyceride moiety of the molecules have been determined, and on this basis the molecular compositions of the phosphatidylcholines have been established: for the DGs 46 species and for the MADGs 43 species. It has been shown that in the cotton plant two types of molecular species are synthesized (mainly to the extent of 85%): Disaturateds and monosaturated-monosaturateds, the disaturateds being characterized by a greater diversity of species but a low amount.Institute of the Chemistry of Plant Substances, Academy of Sciences of the Uzbek SSR, Tashkent. Translated from Khimiya Prirodnykh Soedinenii, No. 3, pp. 324–330, May–June, 1977.     

Semi-empirical studies of torsional potentials in halonitrosomethanes

Semi-empirical molecular electronic structure calculations have been performed on a number of species of the general formulae CX₃NO and CX₂YNO, where X, Y = Cl, F and H. Potential energy curves for the internal rotation (torsion) of the nitroso functional group and geometric parameters of the molecules have been obtained. These calculations have employed the public domain AMPAC package, using both the MNDO and AM1 models available within that package. Graphical results are presented and compared with previous ab initio calculations and experimental determinations, where they exist. The results of these calculations should prove valuable as an aid in the analysis of the spectroscopy of these species.     

High‐spin behavior of molecular crystals and extended π systems

The qualitative rules for the existence of high‐spin ground states in extended systems and molecular crystals are examined here on a firmer theoretical footing. Extended systems have been categorized into three groups, namely, type I, type II, and type III, depending on the type of bonding interactions. The general form of the spin Hamiltonian operators have been written down. The active spaces have been restricted to the minimum size for each of these three types of spin systems. The zeroth‐order state vectors and the Hartree–Fock ground‐state energies have been identified for unit species of each type. The extended system Hamiltonian operators are further truncated in such a way that only the nearest‐neighbor interactions are retained. Expressions have been derived for the energy gap from a molecular orbital approach. The relatively small effects of electron correlation on the energy gaps have been estimated for the type I systems, which belong to the systems of solid‐state physics. In particular, it has been shown that for the type I systems the singlet–triplet gap, and hence the ferromagnetic coupling constant, primarily depends upon the difference of one‐electron kinetic energies and not on the two‐electron exchange integrals. This result agrees with the concept of kinetic exchange that was introduced in the context of a resonating valence‐bond formalism. Type II systems are exemplified by extended systems that can be prepared from conjugated molecules while organic molecular crystals form examples of type III species. For these systems, however, the Coulomb exchange interaction has been shown to dominate the energy gap. A quick review of the Heisenberg spin Hamiltonian for the H₂ molecule is sufficient to point out that the sign of the calculated ferromagnetic coupling constant depends on the method of calculation, the nature of the basis set, and the bond length. This is amply supported by ab initio calculations on this species. Numerical data have also been obtained from computations on m‐phenylene‐coupled nitroxy radicals and stacks of α‐nitronyl nitroxide, but these calculations have been based on a semiempirical quantum chemical methodology (INDO) since some of the species involved are exceedingly large. Computed energy gaps are in good agreement with experimental and other theoretical (AM1, PM3) results. Nevertheless, for the dimer, trimer, tetramer, and pentamer of the type II specimen, the important π orbitals are far from being degenerate. The quantitative results clearly deviate from the criterion of degeneracy that was suggested from qualitative theories for the existence of a high‐spin ground state. Therefore, the criteria for the existence of high spins have been reformulated in terms of the monomer orbitals. © 2000 John Wiley & Sons, Inc. Int J Quant Chem 79: 308–324, 2000     

Ion-molecule reactions and fragmentation patterns in helium nanodroplets

A study has been made of the ion chemistry of a series of small molecules that have been embedded in helium nanodroplets. In most instances, the molecules H2O, SO2, CO2, CH3OH, C2H5OH, C3H7OH, CH3F, and CH3Cl have been allowed to form clusters, and reactivity within these has been initiated through electron impact ionization. For two of the molecules studied, CF2Cl2 and CF3I, reactivity is believed to originate from single molecules embedded in the droplets. Electron impact on the droplets is thought to first create a helium ion, and formation of molecular ions is then assumed to proceed via a charge hopping mechanism that propagates though the droplet and terminates with charge-transfer to a molecule or cluster. The chemistry exhibited by many of the cluster ions and at least one of the single molecular ions is very different from that observed for the same species in isolation. In most cases, reactivity appears to be dominated by high-energy bond breaking processes as opposed to, in the case of the clusters, ion-molecule reactions. Overall, charge-transfer from He+ does not appear to be a "soft" ionization mechanism.     

Oligopyrrole macrocycles: receptors and chemosensors for potentially hazardous materials

Oligopyrroles represent a diverse class of molecular receptors that have been utilized in a growing number of applications. Recently, these systems have attracted interest as receptors and chemosensors for hazardous materials, including harmful anionic species, high-valent actinide cations, and nitroaromatic explosives. These versatile molecular receptors have been used to develop rudimentary colorimetric and fluorimetric assays for hazardous materials.     

Hydroxyl species in large-pore phenylene-bridged periodic mesoporous organosilica

Silanol species in phenylene-bridged periodic mesoporous organosilica (PMO), templated via tri-block copolymer Pluronic P123 and thus characterized by large pores and amorphous wall structure, have been characterized by means of FT-IR spectroscopy. Investigation has been carried out on both the naked sample outgassed at different temperatures and the sample when interacting with molecular probes able to form H-bonding (ammonia and carbon monoxide). After outgassing at 773 K, the material shows both isolated silanols and silanols engaged in "intraframework" H-bonding with the pi-cloud of structural aromatic rings. Interaction with ammonia showed that a fraction of these species is inaccessible, being probably located inside the pore walls. Thermal treatment above 673 K causes the appearance of SiO3(OH) species formed as a consequence of the cleavage of some Si-C bonds. The presence of hydroxyls slightly more acidic than isolated silanols has been evidenced: these are interpreted as perturbed geminal species.     

Molecular dynamics,root-mean-square amplitudes,statistical thermodynamics,and molecular polarizability for the isotopic species of dioxygen monofluoride

A brief survey of vibrational spectral studies for the four isotopic species of dioxygen monofluoride has been made. On the basis of group theoretical considerations, symmetry coordinates have been constructed and kinetic energy matrices (orG matrix elements), potential energy matrices, and secular equations have been derived to calculate the valence force constants. The mean-square amplitudes and root-mean-square amplitudes for both the bonded and nonbonded atom pairs have been calculated at the room temperature. On the basis of a rigid rotator and harmonic oscillator model, enthalpy function, free enthalpy function, entropy, and heat capacity have been calculated from 200 to 2000 °K for all the four isotopic species. On the basis of a delta-function potential model based on the variational method and delta-function electronic wave functions, the bond parallel components, the bond perpendicular components, the contribution by the nonbonding electrons, and the average molecular polarizability have been calculated. The results obtained from these studies clearly confirm a double bond character for the oxygen—oxygen distance and a bond order of less than one-half for the oxygen—fluorine distance. The results have been discussed in relation to the nature of the two characteristic bonds involved in this molecular system.     

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