Formation of C4H4(•+) from the pyridine radical cation: a theoretical mechanistic and kinetic study

The potential energy surface (PES) for the formation of C(4)H(4)(?+) from the pyridine radical cation by loss of HCN was determined from quantum chemical calculations using the G3//B3LYP method. The complete reaction pathways for the formation of the low-energy C(4)H(4)(?+) isomers, radical cations of methylenecyclopropene (MCP(?+)), vinylacteylene (VA(?+)), cyclobutadiene, and butatriene were obtained. Based on the PESs, a Rice-Ramsperger-Kassel-Marcus model calculation was performed to investigate the dissociation kinetics. The calculated dissociation rate constants agreed with the previous experimental data. It was predicted that a mixture of MCP(?+) and VA(?+) was formed by loss of HCN. The formation of MCP(?+) was more favored near the dissociation threshold and at high energies, whereas the formation of VA(?+) was more favored at the low energies corresponding to the ion lifetime of microseconds.     

Intramolecular charge transfer in π-conjugated oligomers: a theoretical study on the effect of temperature and oxidation state

Intramolecular charge transfer (ICT) of gaseous π-conjugated oligo-phenyleneethynylenes (OPE) induced by a homogeneous applied electric field has been theoretically investigated using a combined approach integrating molecular dynamics (MD) simulations and Perturbed Matrix Method calculations. In line with recent investigations, our results indicate the peculiar role of conformational transitions on OPE electronic properties which reflects on a strong temperature effect on ICT. Electron transfer reactions inducing chemical alteration on OPE, also taken into account in this study, revealed extremely important for explaining non-linear ICT effects and probably plays a central role in the mechanisms underlying molecular transport junctions. Our study further points out the necessity of using MD-based approach for modelling molecular electronics, even when relatively rigid molecular systems are concerned.     

A quantum chemical study of the infrared absorption intensities of the isoelectronic C2v systems H2F+, H2O and NH−2

The results of a comparative theoretical study of the dipole moment derivatives and infrared absorption intensities within the double harmonic approximation are presented for the isoelectronic, isostructural C_2v molecules: H₂F⁺, H₂O and NH⁻₂. The calculations, performed at the ab initio SCF and CI levels of theory, utilize basis sets of triple zeta+two polarization functions quality. For the ions H₂F⁺ and NH⁻₂, in the absence of adequate experimental data the equilibrium geometries and force constants were also calculated. The trends observed in the dipole moment derivatives for the three systems are indicative of the amount of electronic charge associated with the hydrogen atoms and are very similar to the trends noted for a set of C_3v hydrides.     

Two-photon absorption properties of two-dimensional π-conjugated chromophores: combined experimental and theoretical study

The two-photon absorption (TPA) properties of four TPEB [tetrakis(phenylethynyl)benzene] derivatives (TD, para, ortho, and meta) with different donor/acceptor substitution patterns have been investigated experimentally by the femtosecond open-aperture Z-scan method and theoretically by the time-dependent density-functional theory (TDDFT) method. The four compounds show relatively large TPA cross sections, and the all-donor substituted species (TD) displays the largest TPA cross-section σ(2) = 520 ± 30 GM. On the basis of the calculated electronic structure, TD shows no TPA band in the lower energy region of the spectrum because the transition density is concentrated on particular transitions due to the high symmetry of the molecular structure. The centrosymmetric donor-acceptor TPEB para shows excitations resulting from transitions centered on D-π-D and A-π-A moieties, as well as transition between the D-π-D and A-π-A moieties; this accounts for the broad nature of the TPA bands for this compound. Calculations for two noncentrosymmetric TPEBs (ortho and meta) reveal that the diminished TPA intensities of higher-energy bands result from destructive interference between the dipolar and three-state terms. The molecular orbitals (MOs) of the TPEBs are derivable with linear combinations of the MOs of the two crossing BPEB [bis(phenylethynyl)benzene] derivatives. Overall, the characteristics of the experimental spectra are well-described based on the theoretical analysis.     

A theoretical study of the OH-initiated gas-phase oxidation mechanism of β-pinene (C10H16): first generation products

An extensive mechanism for the OH-initiated oxidation of β-pinene up to the first-generation products was derived based on quantum chemical calculations, theoretical kinetics, and structure-activity relationships. The resulting mechanism deviates from earlier explicit mechanisms in several key areas, leading to a different product yield prediction. Under oxidative conditions, the inclusion of ring closure reactions of unsaturated alkoxy radicals brings the predicted nopinone and acetone yields to an agreement with the experimental data. Routes to the formation of other observed products, either speciated or observed as peaks in mass spectrometric studies, are also discussed. In pristine conditions, we predict significant acetone formation following ring closure reactions in alkylperoxy radicals; in addition, we predict some direct OH recycling in subsequent H-migration reactions in alkylperoxy radicals. The uncertainties on the key reactions are discussed. Overall, the OH-initiated oxidation of β-pinene is characterized by the formation of a few main products, and a very large number of products in minor to very small yields.     

The Curl–Divergence equations for the electronic non-adiabatic coupling terms: study of the C2H molecule and the H2+H system

This Letter is part of an effort to use the Curl equations to calculate non-adiabatic coupling terms, subject to ab initio boundary conditions. As examples we consider two-state, planar, systems characterized by two coordinates, θ and q and treat the corresponding non-adiabatic coupling terms, namely, τ_θ(q,θ) and τ_q(q,θ). The theory, which yields τ_q(q,θ) once τ_θ(q,θ) is given, is applied to three cases: an analytical model and two ab initio treatments – one for the C₂H molecule and one for the H+H₂ molecular system. In all three cases encouraging agreements were obtained between the theoretical τ_q(q,θ) values and the ab initio ones.     

Two-dimensional sheet based on C–H···N hydrogen bonds within an organic cocrystal: a crystallographic,spectroscopic and theoretical study

The cocrystal containing 1,2,4,5-tetracyanobenzene (TCNB) and trans-1,2-bis(4-pyridyl)ethylene (4,4′-BPE) has been realised (TCNB)·(4,4′-BPE) 1. Compound 1 produces a two-dimensional sheet based on two different types of C–H···N hydrogen bonds. Each molecule within the cocrystal functions as both a donor and an acceptor of hydrogen bonds. Weak hydrogen bonds such as these, acting as the driving force to produce a polymeric assembly, are not investigated as frequently as stronger and more traditional O–H···O and O–H···N hydrogen bonds within multicomponent cocrystals. The existence of the different types of C–H···N hydrogen bonds was confirmed by single-crystal X-ray diffraction as well as infrared spectroscopy. The overall interaction energies for both types of hydrogen bonds were determined by computational calculations at various levels of theory.     

A theoretical study of the H2SO4+H2O → HSO4 −+H3O+ reaction at the surface of aqueous aerosols

The surface region of sulfate aerosols (supercooled aqueous concentrated sulfuric acid solutions) is the likely site of a number of important heterogeneous reactions in various locations in the atmosphere, but the surface region ionic composition is not known. As a first step in exploring this issue, the first acid ionization reaction for sulfuric acid, H₂SO₄ + H₂O HSO₄^– + H₃O⁺, is studied via electronic structure calculations at the Hartree–Fock level on an H₂SO₄ molecule embedded in the surface region of a cluster containing 33 water molecules. An initial H₂SO₄ configuration is selected which could produce H₃O⁺ readily available for heterogeneous reactions, but which involves reduced solvation and is consistent with no dangling OH bonds for H₂SO₄. It is found that at 0 K and with zero-point energy included, the proton transfer is endothermic by 3.4 kcal/mol. This result is discussed in the context of reactions on sulfate aerosol surfaces and, further, more complex calculations.Contribution to the Jacopo Tomasi Honorary Issue     

A theoretical study of topomerization of imine systems: Inversion,rotation or mixed mechanisms?

The different mechanisms, rotation, inversion, or intermediate mechanism, by which occur the topomerization of imine systems R₂ CN X have been studied by applying ab initio, B3LYP, and MP2 methods. The effect of a wide variety of substituents R and X on the isomerization pathway have been examined by computing fully optimized structures of the ground and transition states (136 isomers belonging to different imine families were studied and more than 300 transition structures were determined at various levels of theory). Energy barriers have been also obtained and it was found that the groups R and X have a strong influence on the type of mechanism involved and the activation energies. Thus, and depending on the type of substituents, transition state structures related to the following kinds of processes were found: pure inversion, intermediate mechanisms, rotation, and enhanced rotation (hyper‐rotation). In turn, the corresponding activation energies range between very low (<10 kcal/mol) and extremely high (> 70 kcal/mol) values. A simple index that allows us to quantify the percentage of inversion or rotation mechanism is proposed. © 2009 Wiley Periodicals, Inc. J Comput Chem, 2010     

A Simplified version of the Pariser-Parr-Pople treatment of π-electron systems

The semi-empirical configuration interaction treatment due to Pariser and Parr and to Pople has been modified by reducing the set of electronic interaction integrals to ₁₁ and ₁₂ and by limiting the number of configurations to 10. Hückel MOs are used as basis functions. The dependence of the resonance integral _v on the interatomic distance R _v is simulated by making _v a quadratic function of the Hückel bond orders P _v .

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Zusammenfassung Eine Modifikation des semiempirischen CI-Verfahrens von Pariser, Parr und Pople wurde zur Behandlung von -Systemen herangezogen. Als Vereinfachung wurde der Grad der CI-Matrix auf zehn beschränkt und von den Elektronenwechselwirkungsintegralen nur ₁₁ und ₁₂ berücksichtigt. Hückel-MOs wurden als Basisfunktionen verwendet. Die Abhängigkeit des Resonanzintegrals _v vom interatomaren Abstand R _v wurde durch den Ansatz von _v als quadratische Funktion der Hückel-Bindungsordnung P _v angenähert.

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Résumé Le procédé semi-empirique de l'interaction de configuration selon Pariser, Parr et Pople a été modifié en réduisant l'ensemble des intégrales d'interaction électronique à ₁₁ et limitant le nombre des configurations à 10. Les fonctions de base sont des orbitales moléculaires selon Hueckel. La dépendance entre l'intégrale de résonance _v et la distance interatomique R _v est simulée en posant que _v est une fonction quadratique des ordres de liaisons P _v selon Hückel.

     

Noble reaction features of bromoborane in oxidative addition of B-Br σ-bond to [M(PMe3)2] (M=Pt or Pd): theoretical study

Through detailed calculations by density functional theory and second-order M?ller-Plesset perturbation theory (MP2) to fourth-order M?ller-Plesset perturbation theory including single, double, and quadruple excitations [MP4(SDQ)] methods, we investigated the oxidative addition of the B-Br bond of dibromo(trimethylsiloxy)borane [Br(2)B(OSiMe(3))] to Pt(0) and Pd(0) complexes [M(PMe(3))(2)] (M = Pt or Pd) directly yielding a trans bromoboryl complex trans-[MBr{BBr(OSiMe(3))}(PMe(3))(2)]. Two reaction pathways are found for this reaction: One is a nucleophilic attack pathway which directly leads to the trans product, and the other is a stepwise reaction pathway which occurs through successive cis oxidative addition of the B-Br bond to [M(PMe(3))(2)] and thermal cis-trans isomerization. In the Pt system, the former course occurs with a much smaller energy barrier (E(a) = 5.8 kcal/mol) than the latter one (E(a) = 20.7 kcal/mol), where the DFT-calculated E(a) value is presented hereafter. In the Pd system, only the latter course is found in which the rate-determining steps is the cis-trans isomerization with the E(a) of 15.1 kcal/mol. Interestingly, the thermal cis-trans isomerization occurs on the singlet potential energy surface against our expectation. This unexpected result is understood in terms of the strong donation ability of the boryl group. Detailed analyses of electronic processes in all these reaction steps as well as remarkable characteristic features of [Br(2)B(OSiMe(3))] are also provided.     

Bent π-Conjugation within a Macrocycle: Asymmetric Total Syntheses of Spirohexenolides A and B

Macrocycles with bent π-conjugation motif are extremely rare in nature and synthetically daunting and anticancer haouamines and spirohexenolides were representative of such rare natural products with synthetically challenging bent π-conjugation within a macrocycle. While the total synthesis of haouamines has been elegantly achieved, spirohexenolides remains an unmet synthetic challenge due to the highly strained bent 1,3,5-triene conjugation within C15 macrocycle. Inspired by the chemical synthesis of cycloparaphenylenes (CPPs) and haouamines, herein we devise a synthetic strategy to overcome the highly strained bent 1,3,5-triene conjugation within the macrocycle and achieve the first, asymmetric total synthesis of spirohexenolides A (>20 mg) and B (>50 mg). Our synthesis features strategic design of ring-closing metathesis (RCM) macrocyclization followed by double dehydration to achieve the C15 macrocycle with the deformed nonplanar 1,3,5-triene conjugation. In addition, we have developed a new enantioselective construction of highly functionalized spirotetronate fragment (northeast moiety) through RCM and Ireland–Claisen rearrangement. Our in vitro bioassay studies reveal that both spirohexenolides are cytotoxic against a panel of human cancer cells with IC₅₀ 1.2–13.3 μM and spirohexenolide A is consistently more potent (up to 3 times) than spirohexenolide B, suggesting the importance of alcohol for their bioactivity and for medicinal chemistry development.     

Addition of halide to π-bond directly from aqueous NaX solution: a general strategy for installation of two different functional groups

Activation of π-bond with organic Lewis acid and cationic surfactant mediated direct transfer of halides to alkyne and alkene are demonstrated to afford α,α-dihaloketones and other valuable synthons with outstanding selectivities.     

Experimental and theoretical study of the dissociation enthalpy of the N–O bond on 2-hydroxypyridine N-oxide: theoretical analysis of the energetics of the N–O bond for hydroxypyrydine N-oxide isomers

The standard (p^∘=0.1 MPa) molar enthalpy of formation of crystalline 2-hydroxypyridine N-oxide was measured, at T=298.15 K, by static bomb calorimetry and the standard molar enthalpy of sublimation, at T=298.15 K, was obtained using Calvet microcalorimetry. These values were used to derive the standard molar enthalpy of formation of 2-hydroxypyridine N-oxide in gaseous phase, and to evaluate the dissociation enthalpy of the N–O bond. Additionally, high-level density functional theory calculations using the B3LYP hybrid exchange-correlation energy functional have been performed for the three isomers of hydroxypyridine N-oxide in order to confirm the experimental trend for the dissociation enthalpy of the (N–O) bond.     

Location of protons in N-H···N hydrogen-bonded systems: a theoretical study on intramolecular pyridine-dihydropyridine and pyridine-pyridinium pairs

Two-dimensional potential energy surfaces (PESs) were calculated for the degenerate intramolecular proton transfer (PT) in two N-H···N hydrogen-bonded systems, (Z)-2-(2-pyridylmethylidene)-1,2-dihydropyridine (1) and monoprotonated di(2-pyridyl) ether (2), at the MP2/cc-pVDZ level of theory. The calculated PES had two minima in both cases. The energy barrier in 1 was higher than the zero-point energy (ZPE) level, while that in 2 was close to the ZPE. Vibrational wavefunctions were obtained by solving time-independent Schr?dinger equations with the calculated PESs. The maximum points of the probability density were shifted from the energy minima towards the region where the covalent N-H bond was elongated and the N···N distance shortened. The effects of a polar solvent on the PES were investigated with the continuum or cluster models in such a way that the solute-solvent electrostatic interactions could be taken into account under non-equilibrated conditions. A solvated contact ion-pair was modelled by a cluster consisting of one cation 2, one chloride ion and 26 molecules of acetonitrile. The calculation with this model suggested that the bridging proton is localised in the deeper well due to the significant asymmetry of the PES and the high potential barrier.