A porous zinc(II) metal–organic framework exhibiting high sensing ability for ferric and nitroaromatics as well as photocatalytic degradation activities against organic dyes

A NbO-type Zn(II) metal–organic framework of {[Zn₂(HL)(H₂O)₂]?H₂O}_n (1) has been developed using a pentacarboxylate 2,5-bis(3′,5′-dicarboxylphenyl)-benzoic acid (H₅L) ligand and characterized. The single-crystal X-ray diffraction studies indicate that 1 comprises free –COOH groups and Zn(II) centers bridged by four carboxylate groups to form a paddle wheel SBU which is further connected by L^5? ligands to build a 3-D porous network with two types of cages. The chemically stable MOF 1 behaves as a highly selective and sensitive fluorescent chemosensor for the detection of Fe³⁺ ions, 2,4,6-trinitrophenol (TNP), which is known to be an extremely hazardous and strong explosive. Furthermore, the photocatalytic properties of 1 for degradation of methyl violet (MV) and Rhodamine B (RhB) have been explored. The possible emission quenching mechanism in the presence of nitro-aromatics (NACs) has been addressed by theoretical calculations and photocatalytic activity of 1 against organic dyes has been supported using density of states (DOS) calculations.     

A novel self-assembly based on double-layer zinc porphyrin sensitizers in supramolecular solar cell

Two new self-assemblies based on zinc porphyrin dyes ZnPx-ZnPA (x?=?1, 2) were synthesized and used for dye-sensitized solar cells. Capping layer dyes consist of zinc porphyrin (ZnP) as core unit and carbazole (P1), phenothiazine (P2) as electron-donating group. The dye ZnPA contains carboxylic group as an anchor porphyrin with upper dyes (denoted as ZnP1 and ZnP2) formed dyads by coordination bonds of Zn-to-ligand self-assembled devices. The assembly modes were also verified by transmission electron microscopy (TEM). The influence of the upper porphyrins on molecular structure as well as photovoltaic performance was investigated via photophysical and electrochemical studies and calculations. With addition of the phenothiazine unit, the ZnP2-ZnPA possesses better light-harvesting capability with a significantly red-shifted Q-band. The photoelectrochemical efficiencies for ZnP2-ZnPA are better than those of ZnP1-ZnPA ascribed to larger J_sc and V_oc.

     

ZnO–Bentonite nanocomposite: an efficient catalyst for discharge of dyes,phenol and Cr(VI) from water

The present work focused on application of ZnO-NPs@bentonite, as a catalyst, for disposal of different pollutants such as dyes, phenol compounds and Cr(VI) ions from water. The prepared ZnO–bentonite nanocomposite was characterized by using FT-IR, X-ray powder diffraction, and Scanning electron microscopy analysis. The results showed that the amount of zinc oxide influenced the catalytic performance of ZnO–bentonite nanocomposite. Small amounts of zinc oxide on bentonite have a positive effect whereas increase in weight ratios has a negative effect.

     

Crystallographic and DFT studies on host-guest complexes consisting of zinc bisporphyrinates and 1-phenylethylamine

We have investigated the chirality transfer from 1-phenylethylamine to a 5-amino-1,3-phthalic acid diamide-linked zinc bisporphyrinate through crystallographic and DFT studies. When the hosts were mixed with optically pure 1-phenylethylamine, CD showed moderate signals in the Soret band region. Single crystals of the corresponding 1:1 and 1:2 host-guest complexes were obtained. We present the first crystallographic structure of a 1:2 host-guest complex consisting of a bisporphyrin host and chiral monoamine guests. The structure reveals that the host-guest interactions are different for two guest molecules. The first guest is involved in a hydrogen bond and π-π interactions, while the second one is only involved in π-π interactions, which has not been observed in previous studies. The corresponding chirality transfer mechanism was also rationalized by DFT calculations.

     

Data-Driven and Multiscale Modeling of DNA-Templated Dye Aggregates

Dye aggregates are of interest for excitonic applications, including biomedical imaging, organic photovoltaics, and quantum information systems. Dyes with large transition dipole moments (μ) are necessary to optimize coupling within dye aggregates. Extinction coefficients (ε) can be used to determine the μ of dyes, and so dyes with a large ε (>150,000 M⁻¹cm⁻¹) should be engineered or identified. However, dye properties leading to a large ε are not fully understood, and low-throughput methods of dye screening, such as experimental measurements or density functional theory (DFT) calculations, can be time-consuming. In order to screen large datasets of molecules for desirable properties (i.e., large ε and μ), a computational workflow was established using machine learning (ML), DFT, time-dependent (TD-) DFT, and molecular dynamics (MD). ML models were developed through training and validation on a dataset of 8802 dyes using structural features. A Classifier was developed with an accuracy of 97% and a Regressor was constructed with an R2 of above 0.9, comparing between experiment and ML prediction. Using the Regressor, the ε values of over 18,000 dyes were predicted. The top 100 dyes were further screened using DFT and TD-DFT to identify 15 dyes with a μ relative to a reference dye, pentamethine indocyanine dye Cy5. Two benchmark MD simulations were performed on Cy5 and Cy5.5 dimers, and it was found that MD could accurately capture experimental results. The results of this study exhibit that our computational workflow for identifying dyes with a large μ for excitonic applications is effective and can be used as a tool to develop new dyes for excitonic applications.     

Kinetic Study on Alpha-Form Crystallization of Mixed-Acid Triacylglycerols POP,PPO, and Their Mixture

The crystallization behavior of the metastable α form of triacylglycerols (TAGs) plays a critical role as a precursor for the crystallization of more stable β′ and β forms for various applications in food and pharmaceutical products. However, precise analysis of the crystallization kinetics of α has not been performed, likely due to its rapid and complex behavior. This paper presents the observation results of the initial stages of the isothermal crystallization kinetics of α forms of 1,3-dipalmitoyl-2-oleoyl-glycerol (POP), 1,2-dipalmitoyl-3-oleoyl-rac-glycerol (rac-PPO), and molecular compound (MC) crystals of a POP/rac-PPO (1/1) mixture (MCPOP/PPO) using synchrotron radiation time-resolved X-ray diffraction and polarized optical microscopy. In all the TAGs, α crystals with a worm-like morphology started to grow rapidly in the first stage. Then, the α crystals slowly transformed into more stable forms in different manners for different TAG samples. In POP, the conversion was simple, as the α-2 form transformed into γ-3, whereas in rac-PPO, the lamellar distance values of the α-2 form continuously decreased with time and changed into the α-3 form. In the MCPOP/PPO crystals, in contrast, separate crystallization of α-2 of a rac-PPO fraction initially occurred, followed by the crystallization of α-2 of POP, and the two α forms merged into α-2 of MCPOP/PPO. This separate crystallization was caused by large differences in the crystallization kinetics of the α forms of POP and rac-PPO.     

Structural characterization and thermal degradation of poly(methylmethacrylate)/zinc oxide nanocomposites

This work is based on the preparation of composites of poly(methylmethacrylate) with zinc oxide nanoparticles synthesized by solution casting method.

Chloroform cast poly(methylmethacrylate) films containing different amounts of ZnO nanoparticles were characterized by XRD, SEM, UV-vis spectroscopy, FTIR spectroscopy and TGA.

The results show that ZnO nanoparticles with a size of 24?nm were fairly dispersed in the polymer matrix. The obtained material had UV shielding capability with optical transparency. Thermal characterization shows that, the nanocomposites were more thermally stable than pure PMMA presenting three degradation steps. Apparent kinetic parameters were determined for each degradation step using peak fitting methodology. According to activation energies, ZnO particles affect simultaneously but oppositely the kinetics of underlying degradation reactions. Thermal stability of the PMMA/ZnO nanocomposites was the result of the overall balance in favor of the inhibiting effect of ZnO.     

Gas chromatography tandem mass spectrometry for the screening of adulterants in seized captagon™ tablets

Background: Amphetamine type stimulants (ATS) are the second most popular illegal drugs used worldwide, after cannabis. The production of ATS has increased across the world, including the Middle East. Fenethylline (Captagon?), amphetamine derivative, sold as a street drug usually contains several adulterants and diluents. In Saudi Arabia, like other countries, samples of illicit ATS are submitted to laboratories to test for the adulterated compounds.

Objective: The objective of the proposed study was to apply gas chromatography/mass spectrometry (GC/MS) for fenethylline profiling of seized samples collected from the Saudi market (n?=?55).

Methodology: The GC/MS analysis was performed on a general purpose column (30?m?×?0.25?mm i.d) coated with 0.25?µm cross bond, 5% diphenyl dimethyl polysiloxane (Rtx-5MS). The mass was operated in the electron impact mode.

Results and discussion: Analyzed samples gave positive results for amphetamine in the concentration range between 1.35% and 37.32% of the powder, caffeine in the range between 22.74 and 44.92%, in addition to different concentrations of levoglucosenone, theophylline, D-allose, lidocaine, methamphetamine, dextromethorphan, and other adulterants. Finally, the presence of other substances in fenethylline street samples could result in intoxication. This significantly contributes to the potential risk of drug addiction among public.     

Development of new and robust LC-MS method for simultaneous quantification of polyphenols from Sambucus ebulus fruits

A new and simple LC-MS method for analysis of flavonoids from Sambucus ebulus berry extracts was developed and validated. Successfully were quantitated seven polyphenols: epicatechin, epigallocatechin gallate, rutin, resveratrol, myricetin, quercetin, and kaempferol.

Two detectors, working in parallel, were used: photodiode-array and single quadrupole mass-detector. The mass detection was used for identification and quantification of the analytes, while the diode-array detector was as confirmation tool. The following m/z were tracked: 457.15 (epigallocatechin gallate); 289.06 (epicatechin); 609.13 (rutin); 227.05 (resveratrol); 317.0 (myricetin); 301.02 (quercetin); 285.02 (kaempferol). For optimization the chromatographic separation three wavelengths 205?nm, 305?nm, 272?nm were monitored. The method was capable to detect in one run compounds with no UV or fluorescence chromophore and with very similar structures, such as plant polyphenols. The linearity was from 0.05?mg/L to 50?mg/L (R² 0.9962–0.9987). The recoveries for all tested analytes were between 81.6% and 104.7%.

The method was applied for analysis of crude extract of Sambucus ebulus ripe fruits. Three major polyphenols – epicatechin (0.84?mg/100gFW), quercetin (0.15?mg/100gFW) and kaempferol (0.05?mg/100gFW) were identified and quantified.

The proposed method could be successfully used for routine analysis of epigallocatechin gallate, epicatechin, rutin, resveratrol, myricetin, quercetin, and kaempferol in Sambucus ebulus extracts.     

Magnetic-Field-Orientation Dependent Thermal Entanglement of a Spin-1 Heisenberg Dimer: The Case Study of Dinuclear Nickel Complex with an Uniaxial Single-Ion Anisotropy

The bipartite entanglement in pure and mixed states of a quantum spin-1 Heisenberg dimer with exchange and uniaxial single-ion anisotropies is quantified through the negativity in a presence of the external magnetic field. At zero temperature the negativity shows a marked stepwise dependence on a magnetic field with two abrupt jumps and plateaus, which can be attributed to the quantum antiferromagnetic and quantum ferrimagnetic ground states. The magnetic-field-driven phase transition between the quantum antiferromagnetic and quantum ferrimagnetic ground states manifests itself at nonzero temperatures by a local minimum of the negativity, which is followed by a peculiar field-induced rise of the negativity observable in a range of moderately strong magnetic fields. The rising temperature generally smears out abrupt jumps and plateaus of the negativity, which cannot be distinguished in the relevant dependencies above a certain temperature. It is shown that the thermal entanglement is most persistent against rising temperature at the magnetic field, for which an energy gap between a ground state and a first excited state is highest. Besides, temperature variations of the negativity of the spin-1 Heisenberg dimer with an easy-axis single-ion anisotropy may exhibit a singular point-kink, at which the negativity has discontinuity in its first derivative. The homodinuclear nickel complex [Ni2(Medpt)2(μ-ox)(H2O)2](ClO4)2·2H2O provides a suitable experimental platform of the antiferromagnetic spin-1 Heisenberg dimer, which allowed us to estimate a strength of the bipartite entanglement between two exchange-coupled Ni2+ magnetic ions on the grounds of the interaction constants reported previously from the fitting procedure of the magnetization data. It is verified that the negativity of this dinuclear compound is highly magnetic-field-orientation dependent due to presence of a relatively strong uniaxial single-ion anisotropy.     

Ca+ Ions Solvated in Helium Clusters

We present a combined experimental and theoretical investigation on Ca+ ions in helium droplets, HeNCa+. The clusters have been formed in the laboratory by means of electron-impact ionization of Ca-doped helium nanodroplets. Energies and structures of such complexes have been computed using various approaches such as path integral Monte Carlo, diffusion Monte Carlo and basin-hopping methods. The potential energy functions employed in these calculations consist of analytical expressions following an improved Lennard-Jones formula whose parameters are fine-tuned by exploiting ab initio estimations. Ion yields of HeNCa+ -obtained via high-resolution mass spectrometry- generally decrease with N with a more pronounced drop between N=17 and N=25, the computed quantum HeNCa+ evaporation energies resembling this behavior. The analysis of the energies and structures reveals that covering Ca+ with 17 He atoms leads to a cluster with one of the smallest energies per atom. As new atoms are added, they continue to fill the first shell at the expense of reducing its stability, until N=25, which corresponds to the maximum number of atoms in that shell. Behavior of the evaporation energies and radial densities suggests liquid-like cluster structures.     

Myristigranol,a new diarylpropane derivative from the wood of Myristica fragrans

Myristigranol, a new diarylpropane derivative, was isolated from the methanol extract of Myristica fragrans wood along with one diarylpropanoid and three stilbenoids. The isolated constituents were exhaustingly identified using the analyses of 1D and 2D NMR spectroscopic techniques and comparison of the literatures reported as well. The antioxidant activity was also determined.

     

Synthesis and Characterization of Two New Organic Dyes for Dye-Sensitized Solar Cells

In the present study, two new organic dyes based on indigo were prepared and used as sensitizers in dye-sensitized solar cells. To this end, indoxyl was utilized as the electron-donor and acrylic acid and cyanoacrylic acid were used as the electron-acceptor anchoring groups. These dyes were purified and characterized by analytical techniques. Spectrophotometric evaluations of the prepared dyes in solution and on a nano-anatase-TiO₂ substrate were investigated. Additionally, oxidation potential measurements were also carried out. Finally, dye-sensitized solar cells were fabricated to determine the photovoltaic behavior and conversion efficiency of each dye.

[Supplementary materials are available for this article. Go to the publisher's online edition of Synthetic Communications® for the following free supplemental resource(s): Full experimental and spectral details.]     

HPTLC coupled to ESI-Tandem MS for identifying phospholipids associated to membrane proteins in photosynthetic purple bacteria

High-performance thin-layer chromatography (HPTLC)-densitometry was directly combined with electrospray (ESI) tandem mass spectrometry for obtaining rapid and relevant structural identification of phospholipids (PL) species associated to membrane proteins (MP), in non-sulfur, purple bacteria having photosynthetic activity. Thus, species belonging to phosphatidylcholines (PC), phosphatidylethanolamines (PE), cardiolipins (CL) and phosphatidylglycerols (PG) associated to MP were investigated in bacterial membrane extracts from Rhodobacter (Rb.) blasticus, Rhodospirillum (R.) rubrum and Rhodobaca (Rbc.) bogoriensis, as well as those which are bound to a purified MP-photosynthetic complex from Rbc. bogoriensis.

PL-classes were separated using a 7-step gradient-solvent sequence with a previous acid plate preconditioning, using Automated Multiple Development. Band zones of the plate corresponding to PL classes were selected to ensure their direct transfer to ion-trap MS equipment through an elution-based interface.

Under the studied conditions, ESI⁺-MS spectra of PC and CL mostly showed sodium adducts ([M?+?Na]⁺) and [M-2H?+?3Na]⁺, respectively, when recorded from the plate. The respective sodium adducts were fragmented in the ion-trap, and sodium remained as the charge of the fragment ions, thus being useful for their structural identification through MS/MS. ESI^--MS and MS/MS spectra of CL were also obtained as [M-2H]^2?, as well as those of PE and PG species as [M-H]^- and [M]^?, respectively.

In this way, relative composition profiles of each studied PL-class by ESI-MS, and further identification of individual PL and the molecular species belonging to each of them by MS/MS were obtained.     

DFT Study on the Mechanism of Iron-Catalyzed Diazocarbonylation

The mechanism of the carbonylation of diazomethane in the presence of iron–carbonyl–phosphine catalysts has been investigated by means of DFT calculations at the M06/def-TZVP//B97D3/def2-TZVP level of theory, in combination with the SMD solvation method. The reaction rate is determined by the formation of the coordinatively unsaturated doublet-state Fe(CO)₃(P) precursor followed by the diazoalkane coordination and the N₂ extrusion. The free energy of activation is predicted to be 18.5 and 28.2 kcal/mol for the PF₃ and PPh₃ containing systems, respectively. Thus, in the presence of less basic P-donor ligands with stronger π-acceptor properties, a significant increase in the reaction rate can be expected. According to energy decomposition analysis combined with natural orbitals of chemical valence (EDA–NOCV) calculations, diazomethane in the Fe(CO)₃(phosphine)(η¹-CH₂N₂) adduct reveals a π-donor–π-acceptor type of coordination.     

TiCl4 Dissolved in Ionic Liquid Mixtures from Аb Initio Molecular Dynamics Simulations

To gain a deeper understanding of the TiCl4 solvation effects in multi-component ionic liquids, we performed ab initio molecular dynamics simulations of 1-butyl-3-methylimidazolium [C4C1Im]+, tetrafluoroborate [BF4]−, chloride [Cl]− both with and without water and titanium tetrachloride TiCl4. Complex interactions between cations and anions are observed in all investigated systems. By further addition of water and TiCl4 this complex interaction network is extended. Observations of the radial distribution functions and number integrals show that water and TiCl4 not only compete with each other to interact mainly with [Cl]−, which strongly influences the cation-[BF4]− interaction, but also interact with each other, which leads to the fact that in certain systems the cation-anion interaction is enhanced. Further investigations of the Voronoi polyhedra analysis have demonstrated that water has a greater impact on the nanosegregated system than TiCl4 which is also due to the fact of the shear amount of water relative to all other components and its higher mobility compared to TiCl4. Overall, the polar network of the IL mixture collapses by including water and TiCl4. In the case of [Cl]− chloride enters the water continuum, while [BF4]− remains largely unaffected, which deeply affects the interaction of the ionic liquid (IL) network.     

A Computational Study of the S2 State in the Oxygen-Evolving Complex of Photosystem II by Electron Paramagnetic Resonance Spectroscopy

The S₂ state produces two basic electron paramagnetic resonance signal types due to the manganese cluster in oxygen-evolving complex, which are influenced by the solvents, and cryoprotectant added to the photosystem II samples. It is presumed that a single manganese center oxidation occurs on S₁ → S₂ state transition. The S₂ state has readily visible multiline and g4.1 electron paramagnetic resonance signals and hence it has been the most studied of all the Kok cycle intermediates due to the ease of experimental preparation and stability. The S₂ state was studied using electron paramagnetic resonance spectroscopy at X-band frequencies. The aim of this study was to determine the spin states of the g4.1 signal. The multiline signal was observed to arise from a ground state spin ½ centre while the g4.1 signal generated at ≈140 K NIR illumination was proposed to arise from a spin 52 center with rhombic distortion. The ‘ground’ state g4.1 signal was generated solely or by conversion from the multiline. The data analysis methods used involved numerical simulations of the experimental spectra on relevant models of the oxygen-evolving complex cluster. A strong focus in this paper was on the ‘ground’ state g4.1 signal, whether it is a rhombic 52 spin state signal or an axial 32 spin state signal. The data supported an X-band CW-EPR-generated g4.1 signal as originating from a near rhombic spin 5/2 of the S₂ state of the PSII manganese cluster.     

Review: Inverse coordination. Inorganic open and cyclic nitrogen heteroatom molecules as coordination centers. A survey of molecular topologies

This review is a follow up to a previous article [I. Haiduc J. Coord. Chem. (2018) doi:10.1080/00958972.2018.1515429.] which illustrated the concept of inverse coordination with structures in which the coordination center is nitrogen alone (mono- and poly-nitrogen moieties). Here the open and cyclic heteroatom molecules with inorganic skeletons and nitrogen donor sites are presented. Organic nitrogen heterocycles will be treated in a further review.

     

Two new triterpenoids from Gardenia jasminoides fruits

A new cycloartane triterpenoid, named gardenolic acid C (1), a new ursane triterpenoid, named 3β,16β,21β,23,24-pentahydroxy urs-12,18,20-trien-28-oic acid γ-lactone (2), together with three know triterpenoids, gardenolic acid A (3), gardenolic acid B (4), and 3α,16β,23,24-tetrahydroxy-28-nor-ursane-12,17,19,21-tetraen (5) were isolated from the fruits of Gardenia jasminoides Ellis. The structures of these compounds were elucidated by analyses of spectroscopic data. All isolates were evaluated for their neuroprotective effects in vitro.

     

Effect of natamycin on the physicochemical properties of corn starch based films and their effect on Penicillium spp. activity

The incorporation of antimicrobials in foods by means of the use of films where they are entrapped collaborates to decrease their diffusion rate. In this work, the physicochemical properties of starch-based films loaded with 1% wt. natamycin were analyzed, and the antifungal activity of these films was evaluated against Penicillium spp..

Variations in the properties of films with 1% natamycin were minimal, leading to the conclusion that this material could be applied to avoid mold development on the surface semi-hard cheeses. Corn starch-based films containing natamycin at 1% w/w inhibited the Penicillium spp. growth in a solid matrix.