Synthesis, structure and complexation of the fluorinated 1,3-enaminoketones containing at the nitrogen atom substituents with a terminal C≡C bond

The reaction of fluorinated lithium 1,3-diketonates with propargylamine hydrochloride and 1,1,1-trifluorpentane-2,4-dione or 1,1,1-trifluoro-4-methoxypent-3-en-2-one with propargylamine and 3-aminophenylacetylene were performed to obtain fluorinated 1,3-enaminones containing at a nitrogen atom substituents with terminal C≡C bonds: (Z)-1,1,1-trifluoro-4-(2-propynylamino)-3-pentene-2-one, (Z)-1,1,2,2-tetrafluoro-5-(2-propynylamino)-4-hexen-3-one, and 4-(3-ethynylphenylamino)-1,1,1-trifluoropentyl-3-en-2-one. Reactions of 4-(3-ethynyl-phenylamino)-1,1,1-trifluoro-pentyl-3-en-2-one with Cu(II) acetate or nanosized powder of copper or its oxides led to the respective chelate complex. The structure of (Z)-1,1,2,2-tetrafluoro-5-(2-propynylamino)-4-hexen-3-one and a copper complex of 4-(3-etinilphenylamino)-1,1,1-trifluoropenta-3-en-2-one was determined by XRD.     

Theoretical predictions of the nitrogen heterocyclic compounds with metal and noble gas (metal = Cu,Ag, Au)

Here, we report a new type of Ng-containing compounds formed between the Ng-M group and nitrogen heterocyclic compounds, (CH₂)_nHNCuNg⁺ (n = 2, 3), (CH)₄NMNg, and (CH)₅NCuNg⁺ (M = Cu, Ag, Au; Ng = Ar, Kr, Xe). Quantum chemistry computations were carried out to optimize their geometric structures and calculate the dissociation energies, dissociation enthalpy, and dissociation free energy change. The stability of these Ng-bonding complexes was inspected by investigating the three dissociation processes of the these compounds into (a) Ng, M, and nitrogen heterocycle C_nN; (b) C_nN + MNg⁺; and (c) C_nNM + Ng, which are all endothermic and nonspontaneous, these dissociation processes are also turned out to be endergonic in nature at standard state. The natural bond orbital, atoms in molecules, and energy decomposition analysis based on the molecular wavefunction show that the M-Ng and M-N bonds have some covalent and electrostatic characters.     

What does shape a topological atom?

In this pedagogical communication after demonstrating the legitimacy for using the quantum theory of atoms in molecules (QTAIM) to non-Coulombic systems, Hookean H₂ ⁺/H₃ ²⁺ species are used for AIM analysis. In these systems, in contrast to their Coulombic counterparts, electron density is atom-like and instead of expected two/three topological atoms, just a single topological atom emerges. This observation is used to demonstrate that what is really “seen” by the topological analysis of electron densities is the clustering of electrons. The very trait of monotonic decay of electron density around the “centers” of clustering guarantees the appearance of topological atoms as basin of attraction of the gradient vector field of the electron density. Although observations with Hookean molecules may seem disappointing at first glance, a careful reasoning points to the fact that the QTAIM methodology is extendable to novel domains, by a knowledge of the morphology of underlying densities, beyond the typical Coulombic systems.     

Influence of insertion of a noble gas atom on halogen bonding in H2O···XCCNgF and H3N···XCCNgF (X = Cl and Br; Ng = Ar, Kr, and Xe) complexes

The H₂O···XCCNgF and H₃N···XCCNgF (X = Cl and Br; Ng = Ar, Kr, and Xe) complexes have been studied with quantum chemical calculations at the MP2/aug-cc-pVTZ level. The results show that the inserted noble gas atom has an enhancing effect on the strength of halogen bond, and this enhancement is weakened with the increase of noble gas atomic number. The methyl and Li substituents in the electron donor strengthen the halogen bond. The interaction energy increases from ?3.75 kcal/mol in H₃N–BrCCF complex to ?9.66 kcal/mol in H₂LiN–BrCCArF complex. These complexes have been analyzed with atoms in molecules, natural bond orbital, molecular electrostatic potentials, and energy decomposition calculations.     

Ethyl anomaly in the nucleophilic substitution at a series of β-methylated alkyl RCH2Z and carbonyl RCOZ carbon centers for R = Me, Et, i-Pr, t-Bu, and Z = LG

We have carried out DFT studies to explore the cause of anomalously fast reaction rates of ethyl group (R = Et) in the gas-phase S(N)2 reactions of RCH(2)Cl+Cl(-) and RCH(CN)Cl+Cl(-), and also for those in the cationic forms of RCH(2)(+) and RCH(CN)(+) with R = Me, Et, i-Pr, and t-Bu. The TS stabilization by hyperconjugative donor-acceptor vicinal charge transfers (CTs) from R to the major NBOs at the reaction center carbon in the S(N)2 TSs were estimated using natural bond orbital (NBO) analyses. In all cases the hyperconjugative CT stabilization increases in the order R = t-Bu < i-Pr < Me < Et in agreement with the experimental as well as theoretical rate orders, exhibiting an ethyl anomaly. We have also determined the reorganization energies and hyperconjugative CTs from R to the two major NBOs, C-O(-) and C-N(+), in the tetrahedral intermediate formed with five water molecules, T(5w), by transformation of sp(2) to sp(3) centers in the reactions of RC(═O)OC(6)H(5) with NH(3). The reorganization energy is the lowest and CT stabilization is the strongest with R = Et in line with the fastest experimental rate. We conclude that C-H is a better donor than C-C bond orbital and hyperconjugative vicinal σ chain extension leads to a stronger CT stabilization in the TS. The stronger CT stabilization for R = Et rather than Me is achieved by enhanced hyperconjugative CT to the reaction center in the TS as a result of narrower energy gap and greater overlap brought about by long-range orbital mixing as the C-H σ-chain is extended from n = 2 for Me to n = 3 for Et. We find that CT properties of the all-trans vicinal hyprconjugative C-H σ-chains are closely analogous to the corresponding conjugative polyene π-chains although skeletal patterns of bridge bonds are different and the stabilization energy gained by extension of the σ-chain is much weaker than that gained by the π-chain.     

On the decrease in the ring π-current upon η6-coordination with a transition metal atom

A synthesis of [10]paracyclophane (Pc) and its organometallic complexes, Pc·Cr(CO)₃, [PcMn(CO)₃]⁺BF₄ ^–, (PcRuC₅Me₅)⁺·PF₆ ^–, (PcRhC₅Me₅)²⁺(BF₄ ^–)₂, and PcCo₄(CO)₉ has been carried out. The¹H NMR spectra of mononuclear complexes of neutral Cr and monocationic derivatives of Mn and Ru have been examined. ⁶-Coordination with a transition metal atom causes a decrease in the ring -current which is exhibited as a downfield displacement of the resonance signals from the protons of the --CH₂ groups in relation to those of free Pc. In the monocationic complexes the deshielding action of the positive charge is also added to this effect. In the¹H NMR spectrum of the cluster PcCo₄(CO)₉ the resonance signals from the --CH₂ protons are shifted upfield in relation to the Pc signals. Consequently, the concept of the ring -current decrease needs more detailed investigation for cluster systems.Translated fromIzvestiya Akademii Nauk. Seriya Khimicheskaya, No. 8, pp. 1467–1470, August, 1993.     

Potential surface topology of a butene—gold atom system in the ground state

Quantum chemical modeling of but-1-ene isomerization to cis-but-2-ene and trans-but-2-ene in the presence of a gold atom has been carried out in the framework of the density functional theory with an extended basis set, the PBE functional, and a pseudopotential with relativistic corrections included. Two possible mechanisms have been considered, viz., with the formation of an intermediate σ-complex with one C(sp²)—Au bond and with gold insertion into the C—H bond. In the former case, the calculated energy barriers to two isomerization stages are higher than 30 kcal mol⁻¹. In the latter case, the reaction involves three stages and proceeds via a metal hydride complex with low barriers. Published in Russian in Izvestiya Akademii Nauk. Seriya Khimicheskaya, No. 7, pp. 1330–1337, July, 2008.     

What is an atom in a molecule?

The derivation of the Hirshfeld atoms in molecules from information theory is clarified. The importance for chemistry of the concept of atoms in molecules (AIM) is stressed, and it is argued that this concept, while highly useful, constitutes a noumenon in the sense of Kant.     

Organocatalytic enantioselective sulfa-Michael addition of thiocarboxylic acids to β-trifluoromethyl-α,β-unsaturated ketones for the construction of stereogenic carbon center bearing a sulfur atom and a trifluoromethyl group

An organocatalyzed asymmetric sulfa-Michael addition of thiocarboxylic acids to β-trifluoromethyl-α,β-unsaturated ketones with a chiral bifunctional amine-squaramide as the catalyst is presented. A wide range of chiral ketone compounds bearing a sulfur atom and a trifluoromethyl group at the stereogenic carbon center could be obtained with excellent results (up to 99% yield, 97% ee) under mild conditions. The developed catalytic system is well-tolerated to both (E)-and (Z)-β-trifluoromethylated-α,β-unsaturated ketones.     

Can the replacement of a single atom in the enzyme horseradish peroxidase convert it into a monoxygenase? A density functional study

Density functional calculations on horseradish peroxidase mutants are presented, whereby one or two of the nitrogen atoms of the axial histidine ligand have been replaced by phosphorus atoms. Our calculations show that phosphorus entices a push effect on the oxoiron group, whereas a histidine side chain withdraws electrons. As a result, we predict that a phosphorus-substituted histidine ligand will convert the active form of a peroxidase into a monoxygenase. This subsitution may be useful for the bioengineering of commercially exploitable enzymes.     

Alkyne Insertion into the M?P and M?H Bonds (M=Pd,Ni, Pt,and Rh): A Theoretical Mechanistic Study of the C?P and C?H Bond‐Formation Steps

In hydrogen‐metal‐phosphorus (H M P) transition metal complexes (proposed as intermediates of H P bond addition to alkynes in the catalytic hydrophosphorylation, hydrophosphinylation, and hydrophospination reactions), alkyne insertion into the metal‐hydrogen bond was found much more facile compared to alkyne insertion into the metal‐phosphorus bond. The conclusion was verified for different metals (Pd, Ni, Pt, and Rh), ligands, and phosphorus groups at various theory levels (B3LYP, B3PW91, BLYP, MP2, and ONIOM). The relative reactivity of the metal complexes in the reaction with alkynes was estimated and decreased in the order of Ni>Pd>Rh>Pt. A trend in relative reactivity was established for various types of phosphorus groups: PR₂>P(O)R₂>P(O)(OR)₂, which showed a decrease in rate upon increasing the number of the oxygen atoms attached to the phosphorus center.     

Range,strength and anisotropy of intermolecular forces in atom–molecule systems: an atom–bond pairwise additivity approach

A new method is proposed to calculate bond energies and equilibrium distances in atom–molecule van der Waals complexes which arises from a balancing between long-range attraction and asymptotic tail of the repulsion. The method, based on correlation formulas between the polarizability of the interacting partners and the main interaction parameters, is an extension of an approach originally developed for atom–atom cases. The basic idea exploits the concept of bond polarizability additivity to represent both the molecular repulsion, in terms of a size which is mainly ascribed to the molecular bonds nearest to the probe atom, and the molecular attraction as due to multi-dispersion centers delocalized on the molecular frame. The method, mainly tested on hydrocarbon–rare gas complexes, can be considered as the starting point for the study of systems of higher complexity.     

Interactions of M(z)-X complexes (M = Cu, Ag, and Au; X = He, Ne, and Ar; and z = ±1)

The coupled cluster singles and doubles method with perturbative treatment of triple excitations is applied to calculate the potentials of M(z)-X complexes (M = Cu, Ag, and Au; X = He, Ne, and Ar; and z = ±1). The bond functions and the basis set superposition errors are considered to obtain accurate interaction energies. The potential energy curves of all complexes are obtained. The vibrational energy levels and the spectroscopic parameters for these complexes are determined. The analytical potential energy functions are also fitted based on the potential energies.     

Analysis of eco-relevant elements and noble metals in printed wiring boards using AAS,ICP–AES and EDXRF

Different analytical procedures were developed to investigate the chemical composition of printed wiring boards. A set of 11 samples from different electronic devices were ground and prepared for ICP-AES and AAS analyses by extraction with aqua regia and microwave digestion. Several sample preparation techniques were used for the analyses by EDXRF; the best results were obtained by embedding the samples in Vaseline. Since no standard reference material is available for printed wiring boards, a model reference material was created to compare the applicability and limitations of the employed analytical techniques.     

Preparation of a novel,efficient, and recyclable magnetic catalyst,γ-Fe_2O_3@HAp-Ag nanoparticles,and a solvent- and halogen-free protocol for the synthesis of coumarin derivatives

In this protocol, Ag supported on the hydroxyapatite-core–shell magnetic γ-Fe_2O_3nanoparticles(γFe_2O_3@HAp-Ag NPs) as a novel, efficient, and magnetically recyclable catalyst is synthesized, and characterized by transmission electron microscopy(TEM), scanning electron microscopy(SEM), Fourier transform infrared spectroscopy(FT-IR), X-ray diffraction(XRD), and vibrating sample magnetometry(VSM). The use of the catalyst is described in the synthesis of coumarin derivatives by the Pechmann condensation of various phenols with β-ketoesters under solvent- and halogen-free conditions at 80℃.This novel and inexpensive method offers advantages, such as recyclability simple experimental protocol, short reaction time, minimal work-up procedure, and excellent yields of products, together with desirable, eco-friendly, green aspects by avoiding toxic elements and solvents, and ease of recovery from the reaction mixture using an external magnet.     

Theoretical Prediction on the Germylenoid HB=GeLiF and Its Insertion Reaction with R-H（R = F,OH,NH_2）

In the present work we investigated a novel triplet ground-state germylenoid HB=GeLiF as well as its insertion reactions with RH(R = F,OH and NH2) using the DFT B3LYP and QCISD methods for the first time.Geometry optimization calculations show that the triplet HB=GeLiF has three equilibrium structures,in which the four-membered ring structure is the most stable with the lowest energy.All mechanisms of the three insertion reactions of germylenoid HB=GeLiF with RH(R = F,OH,and NH2) are identical to each other.Based on the calculated results,it is concluded that under the same conditions the insertion reactions should occur easily in the order of H-F > H-OH > H-NH2.In THF solvent the insertion reactions get more difficult than in the gas phase.     

Theoretical investigation of the noble gas molecular anions XAuNgX? and HAuNgX? (X?=?F, Cl, Br; Ng?=?Xe, Kr, Ar)

The geometries, atomic charge distributions, vibrational frequencies, and relative energies of the noble gas molecular anions XAuNgX^? and HAuNgX^? (X?=?F, Cl, Br; Ng?=?Xe, Kr, Ar) were investigated at the MP2 and CCSD(T) levels of theory. The Au?CNg bond length of X(H)AuNgX^? is mainly dependent on the electronegative fragment bonded to the Au atom rather than on that bonded to the Ng atom. The presence of the right X^? anion stabilizes the Au?CNg bond of X(H)AuNg. Based on the interatomic distances and atomic charge distributions, X(H)AuNgX^? may be better described as X(H)AuNg···X^? rather than as X(H)^?···AuNgX. The MP2 calculations indicate that, for the Xe, Kr, and Ar molecular anion series, (i) X(H)AuNgX^? is less stable than the global minimum X(H)AuX^??+?Ng by ca. 25?C35, 33?C48, and 37?C57?kcal/mol, respectively, (ii) the reaction barriers are ca. 5?C14, 3?C9, and 2?C5?kcal/mol, respectively, when the anion dissociates into X(H)AuX^??+?Ng through the bending transition state, and (iii) X(H)AuNgX^? is more stable than the dissociation limit X(H)AuNg?+?X^? by ca. 14?C38, 11?C30, and 9?C25?kcal/mol, respectively.