Electron ionization mass spectra of indolenines obtained using sector and ion trap mass spectrometers

The electron impact (EI)-induced fragmentations of 18 indolenines were studied using both double-focusing and ion trap mass spectrometers. The compounds used in this study were synthesized to provide correlations of characteristic fragment ions with specific structural differences. In 2-hydroxyindolenines the hydroxy group was involved in a major fragmentation process by interacting with the ester side chain to generate an alpha,beta-unsaturated gamma-lactone structure, with concomitant loss of the corresponding alcohol. In contrast, loss of an alkyl radical, derived solely from the 2-alkoxy group, is a major primary decomposition process for 2-alkoxyindolenines. EI-MS analyses using sector and ion trap spectrometers resulted in similar fragmentation patterns.     

Comparison of product ion spectra obtained by liquid chromatography/triple-quadrupole mass spectrometry for library search

Reproducibility of product ion spectra acquired using a liquid chromatography/triple-quadrupole mass spectrometry (LC/MS/MS) instrument over a 4-year period, and with three other LC/MS/MS instruments, one from the same manufacturer and two from a different manufacturer, was examined. The MS/MS spectra of 30 drug substances were generated in positive electrospray ionization mode at low, medium, and high collision energies (20, 35, and 50 eV). Purity and Fit score percentages against a 400-compound LC/MS/MS spectral library were calculated using an algorithm in which fragment intensity ratios and weighting factors were included. The long-term reproducibility study was conducted using a brand A instrument; after 4 years the reproducibility of the product ion spectra was still 94%, expressed as average Purity score. The inter-laboratory study involved two parts. Firstly, two LC/MS/MS spectral libraries, created independently in separate laboratories using brand A instruments, were compared with each other. The average Fit and Purity scores of spectra from one library against the other were better than 93 and 91%, respectively, when the same collision energies were used. Secondly, for the comparison of product ion spectra between brand A and brand B instruments, fragmentation conditions were first standardized for amitriptyline as the standard analyte. The average Fit scores of brand B spectra against the brand A spectral library varied between 79 and 85% at all three collision energies. These results indicate that, after standardizing the instrumental conditions, LC/MS/MS spectral libraries of drug substances are suitable for inter-laboratory use.     

The mass spectra of eleven derivatives of cyanocyclopropane

Studies of the mass spectrum of 1,2-diphenyl 1-cyclopropane show that a large number of fragmentations and rearrangements take place during the electron-impact of this compound. The mechanisms involved were identical to those found in the studies previously made on the cyclopropanes. Other patterns of fragmentations and rearrangements will also be shown, resulting from the presence of the cyano and substituted diphenyl groups linked on the propanic ring. The nature of the para substituent is fundamental to the aspect of the mass spectra.     

Recent developments of miniature ion trap mass spectrometers

The recent development of miniature ion trap mass spectrometer systems in the last ten years is reviewed in this paper. These instruments adopt different atmospheric pressure interfaces (APIs), which are membrane inlets (MIs), discontinuous atmospheric pressure interface (DAPI) and continuous atmospheric pressure interface (CAPI).     

Standardization of Raman spectra for transfer of spectral libraries across different instruments

In this paper we evaluate methods for standardization of Raman spectra that are required to improve spectral correlation computations between spectra measured on different instruments. Five commercially-available 785 nm Raman spectrometers from different vendors were included in the study. These spectrometers have diverse specifications and performance levels and range in size from laboratory-based instruments to field-deployable portable and handheld platforms. Since each Raman spectrometer has different characteristics, spectra obtained on one instrument cannot readily be compared to a library acquired on a different instrument without performing various types of spectral corrections (standardization). We outline a procedure that combines previously established Raman shift and intensity correction protocols with a resolution matching step to facilitate the comparison of a centralized master library with spectra acquired on different geographically distributed Raman spectrometers. The standardization procedure is effective in reducing the inherent instrument-to-instrument variability so that spectra from different spectrometers can be compared and reliable results obtained using library-based spectral correlation methods. The findings have important implications for the ability to transfer Raman spectral libraries between instruments.     

Creation and comparison of MS/MS spectral libraries using quadrupole ion trap and triple-quadrupole mass spectrometers

Searchable libraries of MS/MS spectra, obtained using liquid chromatography/tandem mass spectrometry (LC/MS/MS) with data-dependent scan mode switching on both quadrupole ion trap and triple-quadrupole mass spectrometers in conjunction with electrospray ionization, are presented. The effects on library search scores of changing the parameters for producing collision-induced dissociation (CID) on both instrument types are systematically evaluated. These observations serve as a basis for determining a universal set of conditions for building MS/MS libraries. A group of 19 closely related steroids was used. The ability to obtain library-searchable spectra at low concentrations is demonstrated for the analysis of a sample of progesterone spiked with hydroxyprogesterone impurities at 0.1 and 0.01%.     

Comparison of negative ion electrospray mass spectra measured by seven tandem mass analyzers towards library formation

A library of negative ion electrospray ionization mass spectra and tandem mass spectra (MS/MS) of sulfonated dyes has been developed for fast identification purposes. The uniform protocol has been elaborated and applied to the measurements of more than 50 anionic dyes. Three collision energies are selected in our protocol which ensures that at least one of them provides a suitable ratio of product ions to the precursor ion. The robustness is investigated with altered values of tuning parameters (e.g. the pressure of the nebulizing gas, the temperature and the flow rate of drying gas, and the mobile phase composition). The results of the inter-laboratory comparison of product ion mass spectra recorded on seven different tandem mass spectrometers (three ion traps, two triple quadrupoles and two hybrid quadrupole time of flight instruments) are presented for four representative anionic dyes--azo dye Acid Red 118, anthraquinone dye Acid Violet 43, triphenylmethane dye Acid Blue 1 and Al(III) metal-complex azo dye. The fragmentation patterns are almost identical for all tandem mass analyzers, only the ratios of product ions differ somewhat which confirms the possibility of spectra transfer among different mass analyzers with the goal of library formation.     

A library of atmospheric pressure ionization daughter ion mass spectra based on wideband excitation in an ion trap mass spectrometer

A searchable library of MS/MS spectra obtained using a quadrupole ion trap mass spectrometer and electrospray or atmospheric pressure chemical ionization is presented. The application of wideband excitation (activation) and normalized collision energy leads to highly reproducible mass spectra which are searched using the NIST algorithm. Flow injection and LC/MS/MS applications of this powerful technique in the biomedical (diastereoisomeric steroids, morphine glucuronides, isovalerylcarnitine) and environmental (pirimicarb and desmethyl-pirimicarb) areas are described.     

Secondary ion mass spectra of oligopeptides

Secondary ion mass spectrometry for oligopeptides, such as tri-tetra-, penta- and hexapeptides, and bioactive peptides, are presented. Quasimolecular ions and cationized molecules were observed, together with many kinds of fragments, which were helpful in structural assignments. Secondary ion mass spectrometry did not prove to be dependent on temperature. Thermal migration of samples on a surface was observed at high temperature. Secondary ion mass spectra obtained with a silver substrate and an aluminium substrate are compared.     

Secondary ion mass spectra of oligosaccharides

The mass spectra of oligosaccharides such as glucose, sucrose, lactose and raffinose obtained by static secondary ion mass spectrometry operated at 10^?6 Torr are presented. Cationized molecular ions are observed in high intensity. Fragment ions are compared with daughter ions produced by collision induced dissociation of field desorbed cationized molecular ions.     

The high mass range time-of-flight secondary ion mass spectra of different polyarene films on silver

 Time-of-flight secondary ion mass spectrometry (TOF-SIMS) was used to investigate thin films of poly(styrene), poly(vinyl napthalene), and poly(4-chlorostyrene) on clean silver substrate surfaces. The mass spectra were taken in the high molecular mass range (m/z>1000 amu). The different fragmentation patterns found are discussed in detail. Obviously, the fragmentation mechanisms are influenced by the electron density of the aryl rings stabilizing or destabilizing the formed cations. Received: 10 April 1996 / Revised: 12 June 1996/Accepted: 14 June 1996     

Siscom — a new library search system for mass spectra

SISCOM is a library search system for mass spectrometry which is based on a new method of coding spectra by selecting the most important peaks within homologous ion series, and on a multiple factor assessment of the result. Examples demonstrate the ability of the system to identify various compounds, even from mixtures or by reference spectra which differ from those measured. SISCOM is especially suitable for detecting structural similarities like common substructures, even in cases where no similarity can be recognized by visual comparison of patterns or by human interpretation of the spectrum.     

Determination of ion and neutral loss compositions and deconvolution of product ion mass spectra using an orthogonal acceleration time-of-flight mass spectrometer and an ion correlation program

Exact masses of monoisotopic ions, and the relative isotopic abundances (RIAs) of ions greater in mass by 1 and 2 Da than the monoisotopic ion, are independent and complementary physical properties useful for distinguishing among elemental compositions of ions possible for a given nominal mass. Using these properties to determine elemental compositions of product ions and neutral losses increases the masses of precursor ions for which unique compositions can be determined. Compositions of the precursor ion, product ion, and neutral loss aid mass spectral interpretation and guide modest chemical literature searches for candidate standards to be obtained for confirmation of tentative compound identifications. This approach is essential for compound characterization or identification due to the absence of commercial libraries of electrospray ionization (ESI) and atmospheric pressure chemical ionization (APCI) product ion spectra. For a series of 34 exact mass measurements, an orthogonal acceleration time-of-flight mass spectrometer provided 34 and 29 values accurate to within 2 and 1 mDa, respectively, for ions from eight simulated unknowns with [M+H](+) ion masses between 166 and 319 Da. Of 36 RIA measurements for +1 Da or +2 Da ions, 35 were accurate to within 20% of their predicted values (or to within 0.4 RIA % when the RIA value was less than 1%) in the absence of obvious interferences, in cases where the monoisotopic ion peak areas were at least 1.7 x 10(5) counts and the ion masses exceeded 141 Da. An ion correlation program (ICP) provided the unique and correct compositions for all but three of the 34 ions studied. Manual inspection of the data eliminated the incorrect compositions. To test the utility of the ICP for deconvoluting composite product ion spectra, all 34 ions were tested for correlation. Six of eight precursor ions were identified as such, while two were compositional subsets of others and were not properly identified. The six precursor ion compositions were still found by the ICP even though ions with masses less than 158 Da were not considered since they could no longer be correlated with a single precursor ion. Finally, two unidentified analytes were characterized, based on data published by others and using the ICP together with mass spectral interpretation.     

A spectral transfer procedure for application of a single class-model to spectra recorded by different near-infrared spectrometers for authentication of olives in brine

Analytical methods for confirmation of food authenticity claims should be rapid, economic, non-destructive and should not require highly skilled personnel for their deployment. All such conditions are satisfied by spectroscopic techniques. In order to be extensively implemented in routine controls, an ideal method should also give a response independent of the particular equipment used. In the present study, near-infrared (NIR) spectroscopy was used for verifying authenticity of commercial olives in brine of cultivar Taggiasca. Samples were analysed in two laboratories with different NIR spectrometers and a mathematical spectral transfer correction – the boxcar signal transfer (BST) – was developed, allowing to minimise the systematic differences existing between signals recorded with the two instruments. Class models for the verification of olive authenticity were built by the unequal dispersed classes (UNEQ) method, after data compression by disjoint principal component analysis (PCA). Models were validated on an external test set.     

Towards a full reference library of MS(n) spectra. Testing of a library containing 3126 MS2 spectra of 1743 compounds

A library consisting of 3766 MS(n) spectra of 1743 compounds, including 3126 MS2 spectra acquired mainly using ion trap (IT) and triple-quadrupole (QqQ) instruments, was composed of numerous collections/sources. Ionization techniques were mainly electrospray ionization and also atmospheric pressure chemical ionization and chemical ionization. The library was tested for the performance in identification of unknowns, and in this context this work is believed to be the largest of all known tests of product-ion mass spectral libraries. The MS2 spectra of the same compounds from different collections were in turn divided into spectra of 'unknown' and reference compounds. For each particular compound, library searches were performed resulting in selection by taking into account the best matches for each spectral collection/source. Within each collection/source, replicate MS2 spectra differed in the collision energy used. Overall, there were up to 950 search results giving the best match factors and their ranks in corresponding hit lists. In general, the correct answers were obtained as the 1st rank in up to 60% of the search results when retrieved with (on average) 2.2 'unknown' and 6.2 reference replicates per compound. With two or more replicates of both 'unknown' and reference spectra (the average numbers of replicates were 4.0 and 7.8, respectively), the fraction of correct answers in the 1st rank increased to 77%. This value is close to the performance of established electron ionization mass spectra libraries (up to 79%) found by other workers. The hypothesis that MS2 spectra better match reference spectra acquired using the same type of tandem mass spectrometer (IT or QqQ) was neither strongly proved nor rejected here. The present work shows that MS2 spectral libraries containing sufficiently numerous different entries for each compound are sufficiently efficient for identification of unknowns and suitable for use with different tandem mass spectrometers.     

Negative ion mass spectra of dicarboxylic acids

The negative ion mass spectra of dicarboxylic acids show [M]^?˙ and prominent [M – H]^?ions. These ions can therefore be used to determine the molecular weight of dicarboxylic acids which do not give positive molecular ions. The [C₂H₃]^? ion is a base peak in the spectra of maleic and fumaric acids. Isomeric phthalic acids are readily differentiated.