氮化锗多形体的四方、单斜和正交畸变的理论研究

采用量子化学从头算方法,对Ge_3N_4的四方、单斜和正交结构同质异相体的微结构、态密度和声子谱进行了研究.形成焓为负值、弹性常数满足Born稳定性准则和声子谱无虚频等结果证实在0~20 GPa范围内3种相都能保持结构稳定.温度变化影响到晶胞体积,从而使体模量发生改变.3种Ge_3N_4都属于半导体,Ge原子和N原子之间存在明显的s-p杂化现象.当压强增大时诱发了离域电子,从而使体系的带隙减小.本文还采用准谐近似对Ge_3N_4的热力学性质进行了研究,结果表明,温度和压强对热膨胀系数、熵、热容、德拜温度和格林爱森参数产生了明显影响.m-Ge_3N_4和t-Ge_3N_4的热膨胀系数分别为o-Ge_3N_4的3倍和2倍.t-Ge_3N_4和o-Ge_3N_4的晶格谐振频率基本不受温度的影响.     

B2C3簇的结构和振动光谱的理论研究

用量子化学从头计算方法研究了Ｂ２Ｃ３簇各种可能的空间结构，计算了相应的振动光谱和结合能。对Ｂ２Ｃ３最稳定构型的电子结构进行了深入的分析和讨论。     

Theoretical study for the HNSi–HSiN isomerization: ab initio and DFT calculations

Ab initio and density functional theory (DFT) calculations using the GAUSSIAN 94 program have been performed to investigate the molecular structures of HNSi and HSiN in the ground state as well as the transition state for the HNSi–HSiN isomerization reaction at the 6-311G(d,p), 6-311+G(2d,p) and 6-311+G(2df,p) basis sets. The results show that DFT calculations at higher levels of theory reproduce experimental vibrational frequencies of both HNSi and HSiN better than ab initio methods including electron correlation effects. Those calculated geometries are accurate enough to predict the rotational constant of HNSi. The barrier height for the isomerization reaction is found to be about 10 kcal/mol.     

尿素分子团簇线性和一阶非线性光学极化率的理论计算

检验分子晶体非线性光学极化率的可加性,对于确认有向气体模型(Oriented-Gas Model) 具有重要的科学意义,对探索新型实用的分子非线性光学材料也有实际的意义。本文对尿素晶体中分子簇非线性光学极化率的可加性做了详尽的理论研究。首次做到了尿素分子最近邻排布团簇的非线性光学极化率的从头算,从而扩展了前人的工作。研究结果有效地确认了有向气体模型。同时,我们还提出了壳层结构模型 (Shell-Structure Model),用以解决有向气体模型中的缺陷,可实现更为有效可靠地计算晶体宏观非线性光学系数。     

An experimental and theoretical study of molecular structure and vibrational spectra of 2-chloronicotinic acid by density functional theory and ab initio Hartree–Fock calculations

In this work, the Fourier transform Raman and Fourier transform infrared spectra of 2-chloronicotinic acid (2-CNA) are recorded in the solid phase. The molecular geometry, vibrational frequencies, infrared intensities and Raman scattering activities of 2-CNA in ground state have been calculated by using ab initio Hartree–Fock (HF) and density functional (B3LYP and B3PW91) methods with 6-31G(d) and 6-311G(d) basis sets level. On the basis of the comparison between calculated and experimental results and the comparison with related molecule, assignments of fundamental vibrational modes are examined. The optimized geometric parameters (bond lengths and bond angles) obtained by using HF show the best agreement with the experimental values of 2-CNA. Comparison of the observed fundamental vibrational frequencies of 2-CNA and calculated results by density functional (B3LYP and B3PW91) and Hartree–Fock methods indicates that B3LYP is superior to the scaled Hartree–Fock and B3PW91 approach for molecular vibrational problems.     

Theoretical study on tetranuclear boron clusters: B4X4 (X = H, F, Cl, Br, I)

The molecular orbitals for B4H4, B4F4, B4Cl4, B4Br4 and B4I4 have been calculated by using all-electron or effective core potential ab initio method at the self-consistent field level using basis sets with diffuse and polarization functions. The boron-boron and boron-halide (-hydrogen) distances of these cage compounds are optimized with three kinds of basis sets constrained to a tetrahedral symmetry. According to the localization scheme of Boys, four three-centered two-electron (3c2e) B-B-B bonds localized on each of the faces of the B4 tetrahedron are derived for B4X4 clusters. The HOMO-LUMO energy gaps, atomization energies and Mulliken overlap populations of these compounds indicate that the stabilities of the clusters decrease in the sequence of B4F4 > B4Cl4, B4H4 > B4Br4 > B4I4.     

HCO＋HCN→HCHO＋CN反应机理研究

用ａｂｉｎｉｔｉｏ方法在ＵＨＦ／６－３１Ｇ基组上研究了ＨＣＯ　＋ＨＣＮ→ＨＣＨＯ＋ＣＮ　反应的反应机理。经寻找反应的过渡态和计算内禀反应坐标（ＩＲＣ）表明，该反应经一过渡态而形成产物，具有较宽的位垒，并属于后位垒反应。用ＵＭＰ２∥６－３１Ｇ方法计算的活化位垒为１４９．６０２ｋＪ／ｍｏｌ，与实验值（１４３．００１ｋＪ／ｍｏｌ）相当一致。     

MP2, DFT and ab initio calculations on thioxanthone

Density functional theory (DFT), HF and MP2 calculations have been carried out to investigate thioxanthone molecule using the standard 6-31+G(d,p) basis set. The results of MP2 calculations show a butterfly structure for thioxanthone. The calculated results show that the predicted geometry can well reproduce the structural parameters. The predicted vibrational frequencies were assigned and compared with experimental IR spectra. A good harmony between theory and experiment is found. The theoretical electronic absorption spectra have been calculated using CIS method. ¹³C and ¹H NMR of the title compound have been calculated by means of B3LYP density functional method with 6-31+G(d,p) basis set. The comparison of the experimental and the theoretical results indicate that density functional B3LYP method is able to provide satisfactory results for predicting NMR properties.     

Effects of fused benzene rings on tautomerizations and inversions of benzo, azabenzo, and oxabenzocycloheptatrienes at theoretical levels

Biologically important bicyclic species, including 6H-, 6H-6-aza-, and 6-oxabenzocycloheptatrienes (in which the benzene moiety is fused meta with respect to the tetrahedral constituents: –CH₂–, –NH–, and –O–, respectively), show strong shifts of tautomerizations in favor of the corresponding tricyclic benzonorcaradienes (with ΔH values of −11.49, −14.55, and −19.20 kcal mol⁻¹, respectively), at B3LYP/6-311++G**//B3LYP/6-31G*, and MP2/6-311++G**//MP2/6-31G* levels, and at 298 K. In contrast, such shifts are strongly disfavored by the isomeric bicyclic species in which the benzene moieties are fused ortho or para with respect to –CH₂–, –NH–, and –O–, respectively. Hence for species with ortho benzene rings including 5H-, 5H-5-aza- and 5-oxabenzocycloheptatrienes, tautomerization ΔH values are 30.76, 31.89, and 25.27 kcal mol⁻¹, respectively, while for species with para fused benzene moieties including 7H-, 7H-7-aza-, and 7-oxabenzocycloheptatrienes, tautomerization ΔH values are 24.12, 26.00, and 19.55 kcal mol⁻¹, respectively. NICS calculations are successfully used to rationalize these results. The calculated energy barriers for inversion of the seven-membered rings of bicyclic species predict a dynamic nature for all the structures except for the virtually planar 6H-6-aza- and 6-oxabenzocycloheptatrienes. Finally, our theoretical data are compared to the experimental results where available. Electronic supplementary material  The online version of this article (doi:) contains supplementary material, which is available to authorized users.     

Molecular structure, IR spectra of 2-mercaptobenzothiazole and 2-mercaptobenzoxazole by density functional theory and ab initio Hartree–Fock calculations

Quantum chemistry calculations have been performed using Gaussian03 program to compute optimized geometry, harmonic vibrational frequency along with intensities in IR and Raman spectra and atomic charges at RHF/6-31+G*, B3LYP/6-31+G* and B3LYP/6-31++G* levels for 2-mercaptobenzothiazole (MBT, C₇H₅NS₂) and 2-mercaptobenzoxazole (MBO, C₇H₅NOS) in the ground state. The scaled harmonic vibrational frequencies have been compared with experimental FT-IR and FT-Raman spectra. The results show that the scaled theoretical vibrational frequencies is very good agreement with the experimental values. A detailed interpretation of the infrared and Raman spectra of 2-mercaptobenzothiazole and 2-mercaptobenzoxazole was reported. Comparison of calculated spectra with the experimental spectra provides important information about the ability of the computational method to describe the vibrational modes.     

Synthesis, characterization, and DFT studies of a novel azo dye derived from racemic or optically active binaphthol

We present a new azo reactive dye from racemic or optically active BINOL. This dye was characterized by UV-vis, FTIR, mass, ¹H NMR, and ¹³C NMR spectroscopic techniques and elemental analysis. The structure and spectrometry of this azo dye have been investigated theoretically by performing HF and DFT levels of theory using the standard 6-31G^∗ basis set. The optimized geometries and calculated vibrational frequencies are evaluated via comparison with experimental values. The vibrational spectral data obtained from solid phase FTIR spectra are assigned based on the results of the theoretical calculations. The theoretical electronic absorption spectra have been calculated using CIS, TD-DFT, and ZINDO methods. In addition, a good agreement between calculated and experimental NMR data is observed.     

Theoretical study on the intramolecular hydrogen bond in chloro-substituted N,N-dimethylaminomethylphenols. I. Structural effects

Ab initio and density functional calculations are applied to study the influence of an increasing number of chlorine substituents on the properties of the intramolecular hydrogen bond in substituted Mannich bases. It is shown, that not only the acidity of the proton donor, which depends on the number of chlorine atoms at the aromatic ring, but also steric interactions modify the geometry of the hydrogen bond. Specific interactions of O–ClH–O hydrogen-bonding in some derivatives are estimated by calculations on related chlorophenols.     

Theoretical Studies on the Si（001）-SiO2 Interface Structure

1 INTRODUCTION Silicon and its alloy have been widely applied in such fields as electronic industry, high-temperature structural ceramics, etc. In addition, the researches on silicon and its relevant materials greatly promote the rapid development of modern optics and infor- mation technology. Therefore, more and more at- tention is focused on the structure of silicon, oxide of silicon and the interfaces between silicon and metal or nonmetal. As an ideal passive film on the Si surface, S…     

Theoretical study of the structure and spectroscopic characterization of the new 1-ferrogermene in the gas phase

We performed, at the DFT/B3LYP level, theoretical studies on different conformations of a new sandwich complex, (GeC₄H₅)₂Fe, and compared the results to ferrocene. The results show that the reaction of formation of the GeC₄H₅⁻ anion would be as favorable as C₅H₅⁻. Contrary to the ferrocene structure (η⁵-H₅C₅)₂Fe, 1-ferrogermene (GeC₄H₅)₂Fe has four stables structures, indicative of possible different reactivity of 1-ferrogermene with respect to ferrocene. The IR spectrum of ferrogermene is significantly different from that of ferrocene: the two vibrations induced by the iron-π CPD cycle’s interactions, noted ξ_Fe↑ and ξ_Fe→, do not appear in the 1-ferrogermene spectra. Whereas, in the 1-ferrogermene spectra, some vibrations appear that are induced by sigma interactions between the Fe and the Ge atoms and the hydrogen atoms, respectively.     

Theoretical Study and NBO Analysis of the Decomposition Kinetics of Oxetane, 2-Methyloxetane and 2,2-Dimethyloxetane

A theoretical study of the thermal decomposition kinetics of oxetane (1), 2-methyloxetane (2), and 2,2-dimethyloxetane (3) has been carried out at the B3LYP/6-311+G**, B3PW91/6-311+G**, and MPW1PW91/6-311+G** levels of theory. The MPW1PW91/6-311+G** method was found to give a reasonable good agreement with the experimental kinetics and thermodynamic parameters. The decomposition reaction of compounds 1～3 yields formaldehyde and the corresponding substituted olefin. Based on the optimized ground state geometries using MPW1PW91/6-311+G** method, the natural bond orbital (NBO) analysis of donor-acceptor (bond-antibond) interactions revealed that the stabilization energies associated with the electronic delocalization from σC3-C4 bonding to σ*O1-C2 antibonding orbitals decrease from compounds 1 to 3. The σC3-C4→σO1-C2 resonance energies for compounds 1～3 are 2.63, 2.59 and 2.45 kcal mol-1, respectively. Further, the results showed that the energy gaps between σC3-C4 bonding and σ*O1-C2 antibonding orbitals decrease from compounds 1 to 3. Also, the decomposition process in these compounds are controlled by σ→σ* resonance energies. Moreover, the obtained order of energy barriers could be explained by the number of electron-releasing methyl groups substituted to the Csp3 atom (which is attached to oxygen atom). NBO analysis shows that the occupancies of σCsp3-O bonds decrease for compounds 1～3 as 3<2<1, and those of σCsp3-O bonds increase in the opposite order (3 > 2 > 1). This fact illustrates a comparatively easier thermal decomposition of the sCsp3-O bond in compound 3 compared to compound 2, and in compound 2 compared to compound 1. NBO results indicate that these reactions are occurring through a concerted and asynchronous four-membered cyclic transition state type of mechanism.     

磷酸二甲酯阴离子(DMP-)与一价、二价金属离子相互作用的理论研究

在B3LYP、HF和MP2水平上运用全电子从头算(AE)和相对论有效实势(RECP)及6-311+G**和LanL2DZ基组计算Ⅰa、Ⅰb、Ⅱa和Ⅱb族金属离子与磷酸二甲酯阴离子(DMP-)的相互作用。 RECP用于除Li+、Be2+外所有的金属离子。 对Na+、K+、Cu+、Mg2+、Ca2+、Zn2+用AE和RECP 2种方法处理。 结果表明:RECP能可靠地用于重金属离子络合物; 二价金属离子络合物(DMP-—M2+)比一价金属离子络合物 (DMP-—M+)稳定;二价金属离子(M2+)可能比一价金属离子(M+)更易使多核苷酸折叠。     

Theoretical studies on substitution isomerism and tautomerism in iodo-histamine molecules

Stabilization energies ΔE (kcal/mol) of various substitution isomers of the two tautomeric iodo-histamine forms have been calculated at the RHF/3-21G^**, MP2/3-21G^** and HF/Sadlej-PTZ levels. The most stable forms are produced by iodo-substitution of histamine in the side chain, ca. 95% of the 5-(2′-amino-2′-iodoethyl)-3H-imidazole and ca. 5% of the 5-(2′-amino-2′-iodoethyl)-1H-imidazole isomer. If iodo-substituted is the imidazole ring only, then the 4-iodo-histamine and 2-iodo-histamine N(1)-H tautomers are predicted to coexist is a mole ratio of ca. 95:5. The only stable form of the deprotonated histamine anion is that with both the imidazole nitrogen atoms deprotonated.