Analysis of the optical and geometrical isomer distributions in selected propylene glycol acetals

For the first time, relative distributions of optical and geometrical isomers in selected propylene glycol acetals are determined. Resolution of the four acetal isomers possible through the reaction of racemic propylene glycol (PG) with selected aldehydes is demonstrated. The four isomers are ascribed to the presence of syn and anti geometrical isomers for each optically active PG acetal enantiomer. Thus, the (+) and well as (-) enantiomer are found to have a pair of syn and anti geometrical isomers. The ratio of the (+) and (-) isomers in the product remains at an approximate 50:50 ratio, as expected. However, somewhat unexpectedly, the syn/anti geometrical isomer ratio systematically varies with the nature of the substituent comprising the side chain of the aldehyde. Mechanisms involving electronic and minimal steric effects are advanced as possible reasons for the change in the syn/anti PG acetal ratios.     

Separation of isomers of dienoic acids by electromigration techniques

Different capillary electromigration techniques were employed to resolve geometrical isomers of sorbic acid, decadienoic acid, and ethyl sorbate. Since these substances differ in their polarity, shape, and size, various electromigration approaches were investigated to separate the four geometrical isomers of each compound. With capillary electrophoresis (CE) modified with a cyclodextrin (β‐CD) the four isomers of sorbic acid were separated using a buffer that consists of 60 mM tetraborate and 8 mg/mL β‐CD. The separation of decadienoic acid geometrical isomers was not possible, even at elevated tetraborate and cyclodextrin concentrations. The four isomers of decadienoic acid were successfully separated using micellar electrokinetic chromatography (MEKC) with a buffer consisting of 30 mM tetraborate and 100 mM SDS and microemulsion electrokinetic chromatography (MEEKC). Ethyl sorbate is the least polar of all the studied substances and its isomers could not be separated by MEKC or MEEKC. The resolution was improved and isomers were fully separated using capillary electrochromatography (CEC) with ODS stationary phase and a mobile phase consisting of 10 mM boric acid in 50% acetonitrile. Minor differences in the polarity and the shape of isomers and high resolving power of the applied techniques were sufficient for separation of very similar compounds. We have shown that versatile electromigration techniques can be applied for separation of geometrical isomers of dienoic acids and their esters.     

MRCI investigation of different isomers of Ni2O2H2(+)

The geometrical and electronic structures of different isomers of Ni(2)O(2)H(2)(+) are investigated by multireference configuration interaction (MRCI) calculations using natural atomic orbital basis sets. The lowest-lying isomer, Ni(2)(OH)(2)(+), has a rhombic shape with two OH groups bridging the Ni atoms. The next isomer in energetic order with a relative energy of 0.29 eV consists of a linear NiONi(OH(2))(+) chain. Other structures with a rhombic shape, (NiH)(2)O(2)(+), with H bound to the Ni atoms have considerably higher energies, above 4 eV. Especially the low-lying isomers are characterised by a large number of low-lying electronic terms. The product Ni(2)O(2)H(2)(+) of the reaction of Ni(2)O(2)(+) with small alkanes is likely to have the rhombic Ni(2)(OH)(2)(+) structure. The reaction energy of the reaction Ni(2)O(2)(+) + H(2)→ Ni(2)(OH)(2)(+) is estimated to be about -3.5 eV.     

Relative Thermodynamic Stabilities of Isomeric Vinyl Ethers Derived from 2-Acetyland 2-Isobutyryltetrahydrofurans. An Experimental and DFT Study

The relative thermodynamic stabilities of four isomeric vinyl ethers obtained by acid-catalyzed cleavage of MeOH from the dimethyl acetals of both 2-acetyltetrahydrofuran and 2-isobutyryltetrahydrofuran have been determined by chemical equilibration in cyclohexane solution. In addition, the structures and relative energies of many of these compounds have also been studied theoretically by DFT calculations. In each series of compounds, the endocyclic isomers, 5-(1-methoxyethyl)-2,3-dihydrofuran and 5-(1-methoxy-2-methylpropyl)-2,3-dihydrofuran, respectively, show the highest thermodynamic stabilities. This is particularly prominent for the vinyl ethers derived from 2-isobutyryltetrahydrofuran in which the equilibrium mixture consists of 90% of the endocyclic isomer at room temperature. The geometrical (exocyclic) isomers of the latter series of compounds show unexpected relative thermodynamic stabilities, but on the basis of the geometry-optimized structures provided by the DFT calculations, a reasonable explanation can be found.     

反相离子对高效液相色谱法分离金属配合物｛Fe［3-(2-吡啶基)-5,6-二苯基-1,2,4-三嗪］3｝2+几何异构体

采用反相离子对高效液相色谱法分离测定了金属配合物｛Fe［3-(2-吡啶基)-5,6-二苯基-1,2,4-三嗪］3｝2+ (［Fe(PDT)3］2+)的两种几何异构体,研究了流动相中有机改性剂(乙腈、甲醇)的含量、不同种类和浓度的离子对试剂(高氯酸钠和十二烷基硫酸钠(SDS))对色谱分离的影响。并在不同的试验条件下,对所获得的色谱参数(保留因子(k)、分离度、选择性因子等)进行了探讨。在不同种类及浓度的离子对试剂条件下,二元流动相中乙腈的含量与两种几何异构体的ln k之间均呈显著的线性关系。研究进一步发现SDS的浓度变化对异构体的保留因子影响程度更为显著。在上述实验的基础上,引入更能灵活调节洗脱强度和分离度的三元流动相(乙腈/甲醇/水),优化选择了三元流动相中有机改性剂的比例以及离子对试剂的种类和浓度,使得异构体的色谱分离得到了满意的结果。实验结果表明,异构体的峰面积(A)和浓度(C)之间的线性关系良好,面式和经式异构体的检测限分别为4.28和3.44 ng/mL (S/N=3)。     

Structural, electronic, and magnetic properties of fe(3)c(2) cluster

On the basis of density-functional theory and all-electron numerical basis set, 20 stable isomers of Fe(3)C(2) cluster are found through optimization calculations and frequency analysis from 108 initial structures. A nonplanar C(s) structure with nonet spin multiplicity and 482.978 kcal/mol of binding energy is found as the candidate of global minimum geometry of Fe(3)C(2) cluster. The binding energies, the energy gaps between the highest occupied molecular orbital and the lowest unoccupied molecular orbital, and the magnetic moments of all the isomers are reported. The relationship between the molecular properties and geometrical structures is also investigated.     

Regiospecific [2+2] cycloadditions of electron-poor acetylenes to (Z)-2-acylamino-3-dimethylaminopropenoates: synthesis of highly functionalised buta-1,3-dienes

Microwave-assisted [2+2] cycloaddition reactions of 2-amino-3-dimethylaminopropenoates with acetylenecarboxylates furnished highly functionalised 1-amino-4-(dimethylamino)buta-1,3-dienes in 40-94% yields. All reactions were observed to consistently produce single geometrical isomers, and in cases where non-symmetrical acetylenes were employed the reactions proceeded in a regiospecific manner.     

Pmr spectra and cis-trans isomerism of 2-methylenepyrrolidine and 2-methylenetetrahydrofuran derivatives

A number of secondary enamines and cyclic enol ethers (2-methylenetetrahydrofuran derivatives) were synthesized by the reaction of O-methylbutyrolactim and 2,2-diethoxytetrahydrofuran, respectively, with compounds that have an active methylene link. The absence of reversible cis-trans isomerization was established in a study of the PMR spectra of these compounds. The configuration of the secondary enamines is determined by the possibility of the formation of a strong intramolecular hydrogen bond between the carbonyl-containing substituent and the NH group. In the case of the cyclic enol ethers it was shown that the energy barrier to cis-trans isomerization is greater than 25 kcal/mole and that, as a consequence of this, the geometrical isomers can be separated preparatively.Translated from Khimiya Geterotsiklicheskikh Soedinenii, No. 7, pp. 914–918, July, 1982.     

Electronic structure and stability of fullerene C82 isolated-pentagon-rule isomers

All nine isolated-pentagon-rule isomers of fullerene C(82) were investigated by the DFT method with the B3LYP functional at the 6-31G, 6-31G*, and 6-31+G* levels. The distribution of single, double, and delocalized π-bonds in the molecules of these isomers is shown for the first time. The obtained results are fully supported by DFT quantum-chemical calculations of electronic and geometrical structures of these isomers. The molecules of isomers 7 (C(3v)), 8 (C(3v)), and 9 (C(2v)) contain some radical substructures (such as the phenalenyl-radical substructure), which indicates that they are unstable and cannot be obtained as empty molecules. Thus, there is a possibility of obtaining them only as endohedral metallofullerenes or exohedral derivatives. Isomers 1 (C(2)), 2 (C(s)), 4 (C(s)), 5 (C(2)), and 6 (C(s)) with closed electronic shell are supposed to be stable, resembling isomer 3 (C(2)), which has just been extracted experimentally as an empty fullerene. We assume they can be produced as empty molecules.     

Generation of regiospecific carbanions under electrospray ionisation conditions and their selectivity in ion-molecule reactions with CO2

Regiospecific formation of carbanions from a set of geometrical (cis and trans isomers) and five different sets of positional isomers (ortho, meta and para isomers) of aromatic carboxylic acids is reported under negative electrospray ionisation conditions by decarboxylation of the carboxylate anions. The structures of decarboxylated anions, [(M-H)-CO(2)](-), are studied by ion-molecule reactions with carbon dioxide in the collision cell of a triple quadrupole mass spectrometer. The [(M-H)-CO(2)](-) ions generated from the trans and meta/para isomers react with CO(2) to produce product ions corresponding to the addition of one CO(2), which confirms the survival of the [(M-H)-CO(2)](-) ions as carbanions. On the other hand, the [(M-H)-CO(2)](-) ions generated from cis and ortho isomers failed to react with CO(2) due to rapid isomerisation of the initially generated carbanion to a aromatic carboxylate/oxide anion, which is unreactive with CO(2), through a facile intramolecular proton transfer from the proton-containing substituent to the carbanion site. When the experiments were performed at high desolvation temperatures (300 degrees C), instead of 100 degrees C, the relative abundance of [(M-H)-CO(2)](-) ions and the corresponding CO(2) adduct in ion-molecule reaction experiments increased significantly due to minimisation of proton exchange. Quantum chemical calculations on some of the generated isomeric carbanions and their isomerised products due to proton transfer support the selective stability of carbanions.     

Stereochemistry of heterocycles

2-Methyl-and 2,5-dialkyl-5-phenoxy-1,3-dioxanes were synthesized and separated into their geometrical isomers by precision rectification. The configuration and conformations of these isomers were determined by PMR spectroscopy. It is shown that the low-boiling trans isomers exist primarily in the chair conformation with an equatorial phenoxy group, whereas the high-boiling cis isomers exist primarily in the chair conformation with an axial phenoxy group.     

Positional and geometrical anionic isomer separations by capillary electrophoresis-electrospray ionization-mass spectrometry

Capillary electrophoresis-electrospray ionization-mass spectrometry (CE-ESI-MS) was applied to the analysis of polar positional and geometrical anionic isomers. Since the investigated positional and geometrical anionic isomers have different pK(a) values, they could be separated by CE-ESI-MS under simple analytical conditions using a bare fused-silica capillary and volatile ammonium acetate buffer after optimizing buffer pH. Ortho-, meta-, para-hydroxybenzoate positional isomers were completely separated on a fused-silica capillary with 20 mM ammonium acetate buffer at pH 10.0, and cis-, trans-cyclohexane dicarboxylate geometrical isomers could be also separated with 20 mM ammonium acetate buffer at pH 4.0. Several analytical parameters affecting ESI-MS sensitivity were also investigated. It was found that both running buffer pH and sheath liquid pH had significant effects on the selectivity and the sensitivity on CE-ESI-MS analysis while sheath flow rate and other parameters had little influence. Under optimized conditions, linearity, detection limit, and repeatability of the analysis of hydroxybenzoate isomers were examined, and good results were obtained. It was found that the method presented in this paper is a simple, robust, and cost-effective method for simultaneous analysis of positional and geometrical anionic isomers as well as of other small anionic compounds.     

Relative Stabilities of the Geometrical and Conformational Isomers of 2-Alkylideneoxacycloalkanes. A DFT Study

The relative stabilities of the geometrical and rotational isomers of 2-alkylideneoxacycloalkanes (-oxiranes, -oxetanes, -tetrahydrofurans, and -tetrahydropyrans; alkyl = Et, Pr, i-Bu, 2,2-dimethylpropyl) have been studied by DFT calculations. Independent of the size of the alkyl group, the E and Z isomers of alkylideneoxiranes have almost comparable stabilities (the Z form, however, being slightly favored), but, with increasing size of the heterocyclic ring, the relative stability of the E isomer decreases. This is particularly prominent for the tetrahydropyran derivatives with alkyl = 2,2-dimethylpropyl, in which marked repulsive interactions between the t-Bu group and the 3-CH₂ group of the tetrahydropyran ring make the E form, ca. 13 kJ mol^–1 less stable than the Z isomer. On the other hand, for alkyl = Et, Pr, and i-Bu, the relative stabilities of the geometrical isomers are almost independent of the alkyl group. Besides the relative stabilities of the geometrical isomers, energetics of the rotational isomerism of the alkyl group about the C(sp ³)—C(sp ²) bond is also surveyed.     

Electronic structure and stability of C86 fullerene Isolated‐Pentagon‐Rule isomers

All 19 Isolated‐Pentagon‐Rule isomers of fullerene C₈₆ were investigated by Density Functional Theory (DFT) methods with B3LYP functional at 6‐31G, 6‐31G*, and 6‐31+G* levels. Preliminary distribution of single, double, and delocalized pi‐bonds in molecules of these isomers of fullerene C₈₆ is fulfilled. Obtained results are perfectly supported by DFT quantum–chemical calculations of electronic and geometrical structures of these isomers. The main reason of instability of isomers 1, 3–15, 18, and 19 are phenalenyl‐radical substructures. Thus, there is a possibility to obtain them only as endohedral metallofullerenes or exohedral derivatives. Isomer 2 (C₂) is unstable due to higher local molecular strain. It is shown that empty C₈₆ may be produced and extracted only as isomers 16 (C_s) and 17 (C₂). © 2010 Wiley Periodicals, Inc. Int J Quantum Chem, 2011     

Methoxide ion mediated reactions of methyl azidoacetate with 4-and 2-cyanobenzaldehyde. An unexpected cyclization of the ortho isomer to a 2(1H)-benzazepine derivative

A condensation reaction of 4-cyanobenzaldehyde ( 1 ) with methyl azidoacetate ( 2 ) in the presence of sodium methoxide produces a mixture of geometrical isomers of azidocinnamates 3 which undergoes thermolysis to give an indole 4 . By contrast, the treatment of 2-cyanobenzaldehyde ( 5 ) with 2 in the presence of sodium methoxide and followed by the usual workup furnishes an azepine derivative 6 .     

Anomalous stereochemistry of pyrazolato-3,5-dicarboxylato-bridged dinuclear chromate(III) complexes containing ethylenediamine-N,N'-dicarboxylates with entrapped unstable conformations: X-ray structure of Na[Cr2(eddp)(mu-pzdc)].6H2O

Several new pyrazolato-3,5-dicarboxylato (pzdc) bridged dinuclear chromate(III) complexes containing linear tetradentate O-N-N-O type ligands were synthesized and structurally characterized. Among them, the X-ray structure of the eddp complex Na[Cr2(eddp)(mu-pzdc)].6H2O (eddp = ethylenediamine-N,N'-dipropionate) was determined to have a (sym-cis)-(unsym-cis) geometrical configuration with intramolecular three-center hydrogen bonds, entrapping the unfavored sym-cis configuration for the Cr(eddp) moiety as well as the favored unsym-cis one. As a pair of positional disorders, there were also found to be two conformational isomers with respect to the absolute configurations of the coordinated asymmetric nitrogen atom at the G (in-plane) ring for the unsym-cis moiety. Moreover, chiral pzdc-bridged dinuclear complexes with another type of O-N-N-O ligand, 1,2-cyclohexanediamine-N,N'-diacetate (cdda), were successfully synthesized, isolated, and characterized by column chromatographic behavior, elemental analysis, and chiroptical spectra. There were two diastereomers for Na[(R,R-cdda)Cr(mu-pzdc)Cr(S,S-cdda)] and only one isomer for Na[(R,R-cdda)Cr(mu-pzdc)Cr(R,S-cdda)] and Na[(R,R-cdda)Cr(mu-pzdc)Cr(edda)] (R,R- or S,S- and R,S-cdda = R,R-trans- or S,S-trans- and R,S-cis-1,2-cyclohexanediamine-N,N'-diacetate, and edda = ethylenediamine-N,N'-diacetate). From their circular dichroism (CD) spectra, these complexes could exhibit the delta-delta absolute configuration with ((sym-cis-R,R-cdda)-(unsym-cis-edda or S,S- or R,S-cdda)) geometrical configuration, indicating the abnormal eq-eq (N-Ceq) configuration for the R,R-cdda. The comparison among the CD spectra of the ((cdda)-(cdda)) complexes revealed that two diastereomers of the ((R,R-cdda)-(S,S-cdda)) complex correspond to the conformational isomers resulting from the difference in geometrical orientations of the secondary amine protons on two coordinated asymmetric nitrogen atoms with the opposite absolute configuration in the unsym-cis-S,S-cdda moiety. In a series of the pzdc-bridged Cr(III) complexes the anomalous conformations in two different geometrical configurations could be entrapped probably owing to stereognostic coordination through the intramolecular N-H...O hydrogen bond interaction.     

Switching of product's chirality in diastereodifferentiating [2+2] photocycloaddition of (E)- versus (Z)-stilbene to chiral fumarate upon direct and charge-transfer-band excitation

[reaction: see text] Diastereodifferentiating [2+2] photocycloadditions of (E)- and (Z)-stilbenes to bis((R)-1-methylpropyl) fumarate were performed through the direct excitation of stilbenes and the selective excitation of the charge-transfer (CT) complex at various temperatures. The geometrical isomers of stilbene afforded the opposite diastereomers of mu-truxinate in both excitation modes, with a dramatic decrease in the product's diastereoselectivity upon prolonged irradiations.     

[Co(2,3-tir)(amp)Cl]ZnCl4体系中三个几何经式异构体的 识别

对[Co(2,3-tir)(amp)Cl]ZnCl42,3-tri=N-(2-aminoethyl)-1,3-propanediamine;amp=2-(aminomethyl)pyridine)体系进行了合成,分离出四个配合物。用单晶X射线衍射分析了两个结构,用二维核磁共振DQCOSY和NOESY技术联合解板了另一结构。结构解析显示它们为该体系的四个几何经式异构体(meridianisomers)。两个晶体结构都属中心对称的空间群,表明它们都是外消旋的对映体。     

Quantification of eicosapentaenoic and docosahexaenoic acid geometrical isomers formed during fish oil deodorization by gas-liquid chromatography

Long-chain polyunsaturated fatty acids (LC-PUFAs) of the n-3 series and especially eicosapentaenoic and docosahexaenoic acids (EPA and DHA, respectively) have important biological properties. The main dietary sources of LC-PUFAs are fish and fish oil. Geometrical isomerization is one of the main reactions happening during the thermal treatment of polyunsaturated fatty acids. Refined fish oils are used to supplement food products in LC-PUFAs and the quality of these nutritional ingredients have to be controlled. In the present study, a suitable method for the quantification of EPA and DHA geometrical isomers in fish oils by gas-liquid chromatography (GC) is presented. A highly polar capillary column (CP-Sil 88, 100 m) operating under optimal conditions was used. Method selectivity was studied by GC-mass spectrometry. The performance characteristics of the quantification method were studied using samples of fish oil deodorized at 220 degrees C for 3 h. The linearity of the method was assessed by analyzing composite samples obtained by mixing fish oil deodorized at 220 degrees C with semi-refined fish oil (control). Precision was evaluated by analyzing the same samples in triplicate. Results showed that the validated method is suitable to quantify low amounts of geometrical (trans) isomers of EPA and DHA in refined fish oils. The limits of quantification of the EPA and DHA geometrical isomers are 0.16 and 0.56 g/100 g of fish oil, for EPA and DHA, respectively. Commercially available LC-PUFA oil samples were evaluated by using the validated method. The results show that the oils analyzed contain low amounts (<1% of total fatty acids) of geometrical isomers of EPA and DHA.