Immobilized enzyme reactors in proteomics

Fast, efficient characterization of proteins is becoming one of the hottest topics in the bioanalytical community, especially for large-scale proteomic studies. As an attractive approach, protein digestion by enzymes supported on various matrices (referred to as immobilized enzyme reactors, IMERs) has recently attracted much attention.In this article, we present a critical overview of some highly efficient IMERs and related analytical systems. We give major coverage to applications of IMERs in proteomic analysis, including protein-expression profiling, characterization of proteins with post-translational modifications, and protein quantification. We also comment on promising trends for IMERs in proteomics.     

Immobilized stationary phases on the basis of polyethylene glycol

The preparation of the immobilized stationary phase based on Carbowax 20 M is described. Bifunctional isocyanates were used for cross-linking. The properties of the prepared stationary phase were studied.     

高效液相色谱中固定酶柱后反应器的应用

本文评述了固定酶柱后反应器在高效液相色谱中的应用。阐述了高效液相色谱与固定酶柱后反应器联用的原理,介绍了固定酶柱后反应器的主要类型。评述了固定酶柱后反应器在生化分析和临床分析中的应用。引文43篇。     

多层开管毛细管酶反应器的制备及在蛋白质酶切中的应用

以石英毛细管作为酶固定化的载体, 在毛细管内壁上逐步合成树枝形大分子聚酰胺-胺(PAMAM), 再通过交联剂戊二醛将胰蛋白酶直接键合到该大分子的末端氨基上, 并对酶固定化条件进行了优化, 制备了多层酶反应器. 利用该酶反应器对马心细胞色素C等蛋白质进行了酶切, 并对酶切的条件进行了优化. 实验结果表明, 该固定化酶反应器具有较高的酶切效率、良好的重现性和稳定性, 可用于蛋白质组学的研究.     

Retention properties of acetone-water mobile phases on a biphenylsiloxane-bonded silica stationary phase in reversed-phase liquid chromatography

The solvation parameter model system constants and retention factors were used to interpret retention properties of 39 calibration compounds on a biphenylsiloxane-bonded stationary phase (Kinetex biphenyl) for acetone-water binary mobile phase systems containing 30–70% v/v. Variation in system constants, phase ratios, and retention factors of acetone-water binary mobile phases systems were compared with more commonly used acetonitrile and methanol mobile phase systems. Retention properties of acetone mobile phases on a Kinetex biphenyl column were more similar to that of acetonitrile than methanol mobile phases except with respect to selectivity equivalency. Importantly, selectivity differences arising between acetone and acetonitrile systems (the lower hydrogen-bond basicity of acetone-water mobile phases and differences in hydrogen-bond acidity, cavity formation and dispersion interactions) could be exploited in reversed-phase liquid chromatography method development on a Kinetex biphenyl stationary phase.     

Prediction of the net retention volumes in gas chromatography using porous polymers coated with different stationary phases

Summary A new expression which permits the prediction of the net retention volumes in gas chromatography with column packings of coated porous polymers is reported. The porous polymers Chromosorb 101 and Chromosorb 102 were used as supports and squalane, Ethofat and Carbowax 20M as stationary phases at three different column temperatures of 80°C, 100°C and 150°C. Several organic compounds of various polarity were used as test compounds and the net retention volumes, V_Ntheor, have been calculated according to this new expression. The V_Ntheor values were compared with the experimental net retention volumes, V_Nexp, and it was found that the difference between these two values is dependent on the type of compound and column packing. Nevertheless, the elution order could be predicted in most cases.     

固定化酶反应器及其在蛋白质组研究中的应用

综述了近年来国内外酶固定化载体的研究进展,侧重于无机材料和有机聚合物材料上的固定化酶方法;此外,也介绍了固定化胰蛋白酶反应器与分离系统联用在蛋白质样品分析中的应用,并展望了固定化酶反应器的研究方向及其在蛋白质组中的应用前景。     

Enzyme based assays in a sequential injection format: a review

Sequential injection analysis systems have been extensively exploited in the last decades for the implementation of enzyme based assays aiming the evaluation of enzyme activity or the determination of specific analytes. The most prominent aspects of the automation of enzymatic assays in these systems are discussed in this review. Special attention is devoted to the mode of enzyme manipulation in homogeneous or heterogeneous media and to the comparison with batch and flow injection enzyme methodologies. The possibility of implementing strategies for the enhancement of selectivity in specific determinations is also addressed. The more recent trends in this field are discussed focusing mainly on the miniaturization resorting to the lab-on valve platform as well as on the bead injection concept.     

Retention of cyanoalkanes and cyanoalkylbenzenes by bonded stationary phases in supercritical fluid chromatography

Summary The retention of cyanoalkanes and cyano-alkylbenzenes during SFC was investigated on alkyl and cyanoalkyl-bonded stationary phases and compared to alkane retention. The particular behaviour of short chain homologues was attributed to a silanophilic interaction with surface-OH groups on the silica and inhibition of specific interactions between solutes and C₁₀CN bonded groups.     

Immobilized polysiloxanes as stationary phases for high-performance liquid chromatography and solid phase extraction

Polysiloxanes immobilized onto the surfaces of porous silica particles have proven to be good stationary phases for the separation of multiresidues of pesticides and their metabolic/degradation products by reversed-phase high-performance liquid chromatography (RP-HPLC). Similar materials have proven effective for pre-concentration and clean-up procedures using solid phase extraction. The present paper describes the preparation and some applications of several of these packing materials.     

阳离子取代基对离子液体气相色谱固定相保留性能的影响

以双-三氟甲烷磺酰亚胺离子（［NTf₂］^-）、三氟甲基磺酸根离子（［TFO］^-）和六氟磷酸根离子（［PF₆］^-）为阴离子,合成了含有丙基、丁基、壬基、乙苯基或氰甲基等阳离子取代基的聚合乙烯基咪唑基离子液体固定相,制备了13种离子液体石英毛细管色谱柱。考察了离子液体固定相结构与色谱柱McReynolds常数、热稳定性和测试化合物保留行为之间的构效关系,研究了阳离子取代基对固定相保留性能的影响规律;同时考察了测试化合物保留指数随温度变化的规律。结果表明,所合成的离子液体固定相具有较强的极性,其保留性能不仅与阳离子取代基的性质密切相关,而且受取代基结构和阴离子影响明显;在考察的温度范围内,测试化合物的保留指数变化规律与传统色谱固定相完全相同。     

The use of an immobilized enzyme nylon tube reactor incorporating a four enzyme system for creatinine analysis

A single immobilized enzyme nylon tube reactor was produced incorporating a four enzyme system for the analysis of creatinine. The enzyme activity ratios in the coupling solution used to prepare the reactor were found to be of extreme importance in governing the activity of the latter. The reactor was incorporated into a continuous flow analysis system used to assay creatinine in urine samples and the results were correlated with a manual technique employing the same enzyme system in solution. The precision, correlation, high specificity, simplicity, and speed of the analysis were concluded to be factors in favor of the method's suitability for urine creatinine determinations.     

Amperometric Sensor and Immobilized Enzyme Electrode for the Determination of Enzymatic Activities

Abstract

A sensitive method for the rapid determination of activities of soluble or immobilized enzymes, based on the electrochemical detection of hydrogen peroxide is described. Kinetic studies (Vmax and K_M determinations) can be performed for all H₂O₂ generating enzymes (i.e. most of the oxidases) using an amperometric probe with a platinum anode at a fixed potential.

When associated with an immobilized glucose oxidase membrane, this sensor constitutes a glucose electrode and the activity of any hydrolase which releases glucose can be measured. There is no need for other auxiliary enzymes and no preincubation step is required. The possibility to carry out continuous analysis constitutes the main advantage of the described method.     

A Trypsin Immobilized Sol-Gel for Protein Indentification in MALDI-MS Applications

The proteolytic enzyme trypsin was chemically immobilized to an amine-functionalized sol-gel using adipoyl chloride under nonaqueous conditions and a nitrogen atmosphere. In the synthesis of the sol-gel, tetraethyl orthosilicate (TEOS), and 3-(2-aminoethylamino) propyldimethoxymethylsilane (AEAPMS) (50:50, v/v) were used, which provided convenient physical and chemical conditions to maintain catalytic activity of immobilized trypsin molecules for the digestion of proteins in proteomics applications. Bovine serum albumin was used as a model protein to perform enzymatic digestion using the trypsin immobilized sol-gel. The resulting peptides were analyzed by matrix-assisted laser desorption/ionization-mass spectrometry to evaluate the digestion performance and specificity of the sol-gel material. The trypsin immobilized sol-gel showed superior enzymatic activity in protein digestion and it was determined that the sol-gel material could be repeatedly used at least 25 times without significant activity loss in long-term use. Additionally, autocatalysis was prevented by immobilization of trypsin. The peptide digest having the highest purity was obtained for protein identification studies.     

碱性药物在硫醚嵌入苯磺酸硅胶固定相上的色谱行为

混合模式色谱（MMC）在复杂样品的分离分析方面具有独到的优势,相比于单一模式色谱,MMC受到多种作用控制,保留机理更为复杂。利用巯基-烯点击化学方法分别制备了单配体和双配体两种硫醚嵌入苯磺酸硅胶固定相,通过改变pH、离子强度和有机溶剂强度等流动相条件,以4种碱性药物为模型,对其保留机理进行了探讨。结果表明,两种固定相都具有反相和离子交换的混合保留机理。通过改变流动相中盐浓度、考察溶质保留因子与盐浓度倒数的关系,证明了反相、单纯离子交换和反相协同离子交换三种作用形式的保留模型更为合理。定量研究表明,在两个固定相上,由单纯离子交换和反相协同离子交换构成的总离子交换作用占主导,各作用占比与溶质、流动相组成、固定相配体的类型及其比例等密切相关,并且协同作用对溶质的保留和分离选择性影响很大。混合模式色谱保留机理的研究对于新型固定相设计和复杂体系的分离优化具有重要理论指导意义。     

High throughput tryptic digestion via poly (acrylamide-co-methylenebisacrylamide) monolith based immobilized enzyme reactor

A poly (acrylamide-co-methylenebisacrylamide) (poly (AAm-co-MBA)) monolith was prepared by thermal polymerization in the 100 or 250 μm i.d. capillary. The monolithic support was activated by ethylenediamine followed by glutaraldehyde. Trypsin was then introduced to form an immobilized enzyme reactor (IMER). The prepared IMER showed a reliable mechanical stability and permeability (permeability constant K = 2.65 × 10⁻¹³ m²). With BSA as the model protein, efficient digestion was completed within 20 s, yielding the sequence coverage of 57%, better than that obtained from the traditional in-solution digestion (42%), which took about 12 h. Moreover, BSA down to femtomole was efficiently digested by the IMER and positively identified by matrix assisted laser desorption/ionization-time of flight mass spectrometry (MALDI-TOF MS). To test the applicability of IMER for complex sample profiling, proteins extracted from Escherichia coli were digested by the IMER and further analyzed by nanoreversed phase liquid chromatography-electrospray ionization-mass spectrometry (nanoRPLC-ESI-MS/MS). In comparison to in-solution digestion, despite slightly fewer proteins were positively identified at a false discovery rate (FDR) of ∼1% (333 vs 411), the digestion time used was largely shortened (20 s vs 24 h), implying superior digestion performance for the high throughput analysis of complex samples.     

Evaluation of thermally pretreated silica stationary phases under hydrophilic interaction chromatography conditions

Three novel hydrophilic interaction chromatography columns packed with bare silica 2.6 μm superficially porous particles were evaluated. These stationary phases undergo a different pretreatment temperature (400, 525, and 900°C) that might influence their kinetic performance and thermodynamic properties. In the first instance, we demonstrated that the performance of these columns was inferior to the commercial ones in the low plate count range (10 000 plates), but was more favorable for N values beyond 40 000 plates. Thanks to its high permeability and reasonable flow resistance (φ = 695), together with a minimum reduced heights equivalent to a theoretical plate value of only 2.4, the stationary phase pretreated at 400°C was particularly attractive for N > 70 000 plates with a remarkably low impedance value (E = 2488). In a second step, the impact of pretreatment temperature was evaluated using two mixtures of polar substances, namely nucleobases and derivatives, as well as nicotine and derivatives. Retentions and selectivities achieved on the tested stationary phases were appropriate, but selectivity differences were minor when modifying pretreatment temperature from 400 to 525°C. When we increased the pretreatment temperature up to 900°C, the surface chemistry was more seriously modified. Finally, the columns presented a good stability even at high temperature (70°C), especially for the phases pretreated at 400 and 525°C.     

两种带有不同间隔臂的环糊精键合固定相保留行为的评价

选取14种模型化合物对两种带有不同间隔臂的环糊精键合固定相(Click Alkyl-CD、Click OEG-CD)进行了反相液相色谱模式下的保留行为评价。通过梯度洗脱条件下保留参数计算方法和CSASS软件,根据3次线性梯度的保留值数据,测出14种溶质分子在两种固定相上的保留参数,在此基础上考察流动相含乙腈浓度与保留因子的关系后发现,Click Alkyl-CD和Click OEG-CD在分离非极性和中等极性化合物时主要基于反相液相色谱模式,而某些化合物(如吲唑)在Click OEG-CD上的保留受多种作用力影响,并不基于反相液相色谱模式。疏水性评价结果表明,反相分离模式下Click Alkyl-CD的保留参数和正辛醇-水分配常数的相关性较好(R=0.7),说明其具有比较强的疏水性;而Click OEG-CD的相关性不高(R＜0.3),说明疏水作用力以外的其他作用力对化合物在反相模式下的保留影响较大。     

Mixed retention mechanism of proteins in weak anion-exchange chromatography

Using four commercial weak anion-exchange chromatography (WAX) columns and 11 kinds of different proteins, we experimentally examined the involvement of hydrophobic interaction chromatography (HIC) mechanism in protein retention on the WAX columns. The HIC mechanism was found to operate in all four WAX columns, and each of these columns had a better resolution in the HIC mode than in the corresponding WAX mode. Detailed analysis of the molecular interactions in a chromatographic system indicated that it is impossible to completely eliminate hydrophobic interactions from a WAX column. Based on these results, it may be possible to employ a single WAX column for protein separation by exploiting mixed modes (WAX and HIC) of retention. The stoichiometric displacement theory and two linear plots were used to show that mechanism of the mixed modes of retention in the system was a combination of two kinds of interactions, i.e., nonselective interactions in the HIC mode and selective interactions in the IEC mode. The obtained U-shaped elution curve of proteins could be distinguished into four different ranges of salt concentration, which also represent four retention regions.     

Characterization and modeling of monolithic stationary phases: application to preparative chromatography

Two different approaches, the rectangular pulse method and a new method, the frontal velocity analysis method are applied to the determination of competitive isotherms for two systems on ODS-silica. Both sets of experimental data are found to fit well to the competitive-Langmuir isotherm equation. The data obtained from the rectangular pulse method and the frontal velocity analysis method are in general agreement with each other and the best coefficients of the competitive isotherms obtained with the two methods are close. This shows that the simpler and easier method, the frontal velocity analysis method can be used to determine binary competitive isotherms.