Self-assembled microstructures of functional molecules

Recent developments of bottom-up fabrication based on self-assembly processes allow us to construct well-designed nano- and microstrctures such as spheres, fibers, tubes, and disks from various functional molecules including biopolymers, conjugated molecules, porphyrins, graphenes, and fullerenes. These assembling techniques do not always require traditional (hydrophilic/hydrophilic) amphiphilic structure. A wide range of functional molecules can be now applied for the fabrication of desired microstructures.     

Self-assembled nanostructures of oligopyridine molecules

The high potential of self-assembly processes of molecular building blocks is reflected in the vast variety of different functional nanostructures reported in the literature. The constituting units must fulfill several requirements like synthetic accessibility, presence of functional groups for appropriate intermolecular interactions and depending on the type of self-assembly processsignificant chemical and thermal stability. It is shown that oligopyridines are versatile building blocks for two- and three-dimensional (2D and 3D) self-assembly. They can be employed for building up different architectures like gridlike metal complexes in solution. By the appropriate tailoring of the heterocycles, further metal coordinating and/or hydrogen bonding capabilities to the heteroaromatic molecules can be added. Thus, the above-mentioned architectures can be extended in one-step processes to larger entities, or in a hierarchical fashion to infinite assemblies in the solid state, respectively. Besides the organizational properties of small molecules in solution, 2D assemblies on surfaces offer certain advantages over 3D arrays. By precise tailoring of the molecular structures, the intermolecular interactions can be fine-tuned expressed by a large variety of resulting 2D patterns. Oligopyridines prove to be ideal candidates for 2D assemblies on graphite and metal sufaces, respectively, expressing highly ordered structures. A slight structural variation in the periphery of the molecules leads to strongly changed 2D packing motifs based on weak hydrogen bonding interactions. Such 2D assemblies can be exploited for building up host-guest networks which are attractive candidates for manipulation experiments on the single-molecule level. Thus, "erasing" and "writing" processes by the scanning tunneling microscopy (STM) tip at the liquid/solid interface are shown. The 2D networks are also employed for performing coordination chemistry experiments at surfaces.     

Alternating hydrophilic and hydrophobic pockets in the channel structures of organostannoxane prismanes: preferential confinement of guest molecules

A hydroxyl-rich hexameric organooxotin prismane has been prepared by reaction of n-BuSn(O)OH with 9-hydroxy-9-fluorenecarboxylic acid. The supramolecular structure of this cage shows channels with hydrophobic and hydrophilic segments, which selectively entrap guest molecules.     

Analysis of guest molecules in clathrasils

Species included in clathrasils have been analyzed by quantitative IR spectroscopy. In the case of dodecasil 3C, with benzene or piperidine as guest molecules, results showed that only one out of 16 or 8 suitable cavities in the clathrasil structure is occupied. This means that a very low quantity of template molecules is sufficient for the crystal growth.     

Self-assembled organic nanotubes through instant gelation and universal capacity for guest molecule encapsulation

Loyal gelling: a C(3) symmetrical L-glutamic acid based gelator was found to instantly form hexagonal nanotubes through anti-solvent gelation in a wide range of mixed solvents at room temperature. Guest molecules, including simple dyes and biological macromolecules, could be entrapped in the nanotubes. This method provides a general and efficient way for the encapsulation of guest compounds in organic nanotubes.     

Synthesis of phototrappable shape-shifting molecules for adaptive guest binding

We have designed and synthesized oligosubstituted bullvalenes 1 and 2 as adaptive molecules that can change their shapes in order to bind tightly to a suitable guest. By incorporation of a photolabile o-nitroveratryloxycarbonate (NVOC) group into bullvalenes 1 and 2, tightly binding species can be selectively isolated from a population of hundreds of interconverting structural isomers. Spontaneous strain-assisted Cope rearrangements allow these shape-shifting molecules to exist in a dynamic equilibrium of configurationally distinct valence isomers, as revealed by dynamic NMR and HPLC studies. When NVOC bullvalenes 1 and 2 were exposed to UV light, the cleavage of the NVOC group resulted in a mixture of static isomers of the corresponding bullvalone. Binding studies of NVOC bisporphyrin bullvalene 1 demonstrated that the dynamic isomeric equilibrium shifted in the presence of C(60), favoring configurations with more favorable binding affinities. Irradiation of a mixture of 1 and C(60) with UV light and isolation of the major static isomer yielded an isomer of bisporphyrin bullvalone with a binding affinity for C(60) that was ～2 times larger than that of the nonadapted isomer bisporphyrin bullvalone 41.     

Self-assembled lipid nanotube hosts: The dimension control for encapsulation of nanometer-scale guest substances

Supramolecular nanotube hosts with precisely controlled inner or outer diameters have been synthesized by self-assembly of unsymmetrical bolaamphiphilic monomers or glucopyranosylamide lipids, respectively. Time-resolved fluorescent measurement using 8-anilinonaphthalene-1-sulfonate (ANS) as a probe revealed that the water confined in a cardanyl-β-D -glucopyranoside lipid nanotube has relatively lower solvent polarity corresponding to that of propanol than bulk water. Extensively developed hydrogen bond networks also characterize the confined water in comparison to the case in bulk water. Encapsulation ability of the glucopyranosylamide lipid nanotube has been examined by filling the lyophilized LNTs with gold or silver nanoparticles, ferritin, or magnetic crystals. Filling the unsymmetrical bolaamphiphile nanotube possessing positively charged inner surfaces with negatively charged polymer beads or ferritin proved to be successful without depending on capillary action. © 2006 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem 44: 5137–5152, 2006     

NMR shielding constants for hydrogen guest molecules in structure II clathrates

Proton NMR shielding constants and chemical shifts for hydrogen guests in small and large cages of structure II clathrates are calculated using density-functional theory and the gauge-invariant atomic-orbital method. Shielding constants are calculated at the B3LYP level with the 6-311++G(d,p) basis set. The calculated chemical shifts are corrected with a linear regression to reproduce the experimental chemical shifts of a set of standard molecules. The calculated chemical shifts of single hydrogen molecules in the small and large structure II cages are 4.94 and 4.84 ppm, respectively, which show that within the error range of the method the H2 guest molecules in the small and large cages cannot be distinguished. Chemical shifts are also calculated for double occupancy of the hydrogen guests in small cages, and double, triple, and quadruple occupancy in large cages. Multiple occupancy changes the chemical shift of the hydrogen guests by approximately 0.2 ppm. The relative effects of other guest molecules and the cage on the chemical shift are studied for the cages with multiple occupancies.     

Binding of small guest molecules to multivalent receptors

The complexation of phenol derivatives, aromatic carboxylic acids, and n-octylgalactopyranoside by hydrogen-bonded exo-receptors is described. The receptors are formed by self-assembly of differently functionalized calix[4]arene dimelamines with 5,5-diethyl barbiturate or butyl cyanurate. The multivalent complementary recognition site of the receptors is used very efficiently to complex multiple guests. A 1:6 binding mode was observed for phenol derivatives forming single hydrogen bonds with all six recognition sites of an ureido functionalized receptor assembly, while 1:3 complexation was observed for phenol derivatives which form two hydrogen bonds with two different ureido recognition sites of the same receptor. Aromatic carboxylic acids are complexed in a 1:6 ratio by receptors having six amino recognition sites. The complexation of n-octylgalactopyranoside by Gly-L-Ser functionalized receptors is also described, indicating that it is possible to use small peptidic fragments to complex biologically important molecules.     

Orientation of guest molecules in doped organic crystals

The orientation of guest molecules in the doped systems, naphthalene-in-anthracene, anthracene-in-naphthalene and tetracene-in-anthracene has been obtained by the use of atom-atom (6-1-exp) potentials. The results indicate that the guest molecules assume nearly the same orientation as the replaced host with only small perturbation on the host lattice. The results are in good agreement with recent ESR studies.     

Diffusion of guest molecules in MCM-41 agglomerates

The pulsed field gradient nuclear magnetic resonance method has been used to study self-diffusion of cyclohexane in a commercial MCM-41 material at different external gas pressures from zero to saturated vapor pressure. It is found that the effective diffusivities exhibit three different regions with increasing pressure: decrease at low pressures, a sudden drop at intermediate pressures, and increase at higher pressures. In addition, in the region of irreversible adsorption (hysteresis loop) the diffusivities are also found to differ on the adsorption and the desorption branches. A simple analytical model taking account of different molecular ensembles with different transport properties due to the complex architecture of the porous structure is developed which provides a quantitative prediction of the experimental data. The analysis reveals that the effective diffusivity is predominantly controlled by the adsorption properties of the individual mesoporous MCM-41 crystallites which, in combination with high transport rates, provide a simple instrument for fine tuning of the transport properties by a subtle variation of the external conditions.     

A six-bowl carceplex that entraps seven guest molecules

A six-bowl carceplex that entraps seven guest molecules, 5.(DMSO)7, was synthesized and characterized. The dynamics of the host shell was studied in solution in the absence and presence of water. A multiple-molecule template was found to drive the formation of 5.(DMSO)x.G(7-x) (G = DMA, DMF; x = 5-7). Higher selectivity was found for species containing greater numbers of DMSO molecules.     

Oligocholate foldamers as carriers for hydrophilic molecules across lipid bilayers

Three cholate foldamers were synthesized by the click reaction between an azide-functionalized cholate trimer and different dialkynyl linkers. The foldamers were labeled with pyrene groups at the ends for their conformational study. The linkers between the two tricholate fragments were found to strongly influence the conformation of the foldamers in solution, as well as their ability to transport hydrophilic molecules across lipid bilayers. The folding of the oligocholates in mixed organic solvents was studied by fluorescence and UV/Vis spectroscopy. Although these molecules could not fold permanently in lipid bilayers, they were found to translocate carboxyfluorescein readily across by a carrier-based mechanism. The transport is proposed to happen when the oligocholates adopt transiently folded structures with a hydrophobic exterior and a hydrophilic internal cavity. The transport rate strongly depended on the structure of the oligocholates and was sensitive even to the change of a single bond in a foldamer 3000 Da in MW. Better folded oligocholates in solution gave slower transport in the membranes.     

Structural control of nanocrystal superlattices using organic guest molecules

We report a host-guest chemistry approach to controlling the structures of nanocrystal superlattices through a molecular inclusion process. Upon addition of an appropriate amount of guest molecules such as squalane, polyisoprene, and 4-cyano-4'-pentylbiphenyl into a nanocrystal suspension, the resulting nanocrystal superlattices adopted non-close-packed structures (e.g., from face-centered cubic to body-centered cubic) and changed their morphologies to form superparticles. Our mechanistic studies revealed that these guest molecules can strongly tailor the kinetic process in superlattice formation, resulting in the formation of non-close-packed nanocrystal superlattices. The insights gained in this study are not only important for making nanocrystal superlattices with desirable architectures but also open a new way of synthesizing novel organic/inorganic composite materials.     

Self-assembled lamellar nanostructures of wholly aromatic rod-rod-type block molecules

Wholly aromatic rod-rod type di- and triblock molecules, oligo(ether sulfone)-b-oligo(ether ketone)s (OES-OEK), were synthesized to study a solid-state self-assembled nanostructure. The OES and OEK segments in the block molecules form segregated crystalline domains. The energy-filtering transmission electron microscopy images revealed that the di- and triblock OES-OEK co-oligomers formed lamellar nanostructures with a periodicity of approximately 9 and 13 nm, respectively. [structure: see text].     

Self-assembled two-dimensional ordered arrays of tripod-type molecules on graphite

Tripod-type molecules with long alkyl chains, 1,1,1-tris(4-alkoxyphenyl)ethanes with octadecyloxy or docosyloxy chains, self-assemble into two-dimensional crystallites on drop-casting onto the surface of highly oriented pyrolytic graphite. In the two-dimensional crystalline domain, the molecules are organized in a mortise-and-tenon motif, as revealed by scanning tunneling microscopy. The time evolution of the crystallite formation has been followed by the dynamic force mode atomic force microscopy. The tripods may be used as a basis for the extension of a two-dimensional order into three-dimensional molecular architectures.     

Selective self-organization of guest molecules in self-assembled molecular boxes

This article describes the synthesis and binding properties of highly selective noncovalent molecular receptors 1(3).(DEB)6 and 3(3).(DEB)6 for different hydroxyl functionalized anthraquinones 2. These receptors are formed by the self-assembly of three calix[4]arene dimelamine derivative molecules (1 or 3) and six diethylbarbiturate (DEB) molecules to give 1(3).(DEB)6 or 3(3).(DEB)6. Encapsulation of 2 occurs in a highly organized manner; that is, a noncovalent hydrogen-bonded trimer of 2 is formed within the hydrogen-bonded receptors 1(3).(DEB)6 and 3(3).(DEB)6. Both receptors 1(3).(DEB)6 and 3(3).(DEB)6 change conformation from staggered to eclipsed upon complexation to afford a better fit for the 2(3) trimer. The receptor selectivity toward different anthraquinone derivatives 2 has been studied using 1H NMR spectroscopy, X-ray crystallography, UV spectroscopy, and isothermal microcalorimetry (ITC). The pi-pi stacking between the electron-deficient center ring of the anthraquinone derivatives 2a-c and 2e-g and the relatively electron-poor melamine units of the receptor is the driving force for the encapsulation of the guest molecules. The selectivity of the hydrogen-bonded host for the anthraquinone derivatives is the result of steric interactions between the guest molecules and the calix[4]arene aromatic rings of the host.     

Two new coordination host frameworks for the inclusion of 4-amino-benzophenone guest molecules

The synthesis and structural characterization of novel organometallic coordination polymers are reported. The reaction of Cd(NO₃)₂ and 4,4′-bipy in CH₃OH/H₂O gave a 2D coordination network formulated as {[Cd(4,4′-bpy)₂·(H₂O)₂](NO₃)₂·4H₂O}¹⁰, which was used to capture an organic guest species (4-amino-benezopheone, C₁₃H₁₁NO (3)) to obtain {[Cd(4,4′-bpy)₂(NO₃)(H₂O)]·NO₃·(C₁₃H₁₁NO)₂} (1). Using L (L=4,4′-trimethylenedipyridine) instead of 4,4′-bipy, {[Cd(L)₂(H₂O)₂]·2H₂O·2NO₃·C₁₃H₁₁NO} (2) was synthesized, which has an interesting configuration.