The octarepeat domain of the prion protein binds Cu(II) with three distinct coordination modes at pH 7.4

The prion protein (PrP) binds Cu2+ in its N-terminal octarepeat domain. This unusual domain is comprised of four or more tandem repeats of the fundamental sequence PHGGGWGQ. Previous work from our laboratories demonstrates that at full copper occupancy, each HGGGW segment binds a single Cu2+. However, several recent studies suggest that low copper occupancy favors different coordination modes, possibly involving imidazoles from histidines in adjacent octapeptide segments. This is investigated here using a combination of X-band EPR, S-band EPR, and ESEEM, along with a library of modified peptides designed to favor different coordination interactions. At pH 7.4, three distinct coordination modes are identified. Each mode is fully characterized to reveal a series of copper-dependent octarepeat domain structures. Multiple His coordination is clearly identified at low copper stoichiometry. In addition, EPR detected copper-copper interactions at full occupancy suggest that the octarepeat domain partially collapses, perhaps stabilizing this specific binding mode and facilitating cooperative copper uptake. This work provides the first complete characterization of all dominant copper coordination modes at pH 7.4.     

EPR characterisation of Cu(II) complexes of poly(propylene imine) dendromesogens: using the orienting effect of a magnetic field.

Liquid-crystalline derivatives of poly(propylene imine)dendrimers of the 0th, 1st and 2nd generations, complexed with copper(II) ions, were studied by EPR spectroscopy. The structures of copper (II) complexes with different Cu(II) loadings x per dendrimer ligand L (x = Cu/L) were determined. At the lowest concentration, the Cu(II) ions form monomeric complexes with approximately square-planar N2O2 coordination of both carbonyl oxygen and amido nitrogen atoms. At higher copper content, two kinds of Cu(II) complex sites with different geometries exist. The orienting effect of a high magnetic field was used to investigate the structure and magnetic properties of the copper(II) complexes. This effect, for the first time in dendrimers, allowed the resolution of five nitrogen super-hyperfine lines on g(z) components with the unusual coupling constant of a(Nz)= 35.9 x 10(-4) cm(-1). The combination of the magnetic parameters and the orienting effect indicates the presence of a monomeric complex with pseudotetrahedral N2O2 coordination of the Cu(II) ion, as well as a "dimer" structure with fivefold coordination, presumably due to an N3O2 environment. Higher copper loadings lead to increased exchange coupling between the complex sites.     

Synthesis and structural properties of patellamide A derivatives and their copper(II) compounds

The synthesis, characterization and copper(II) coordination chemistry of three new cyclic peptide ligands, PatJ(1) (cyclo-(Ile-Thr-(Gly)Thz-Ile-Thr-(Gly)Thz)), PatJ(2) (cyclo-(Ile-Thr-(Gly)Thz-(D)-Ile-Thr-(Gly)Thz)), and PatL (cyclo-(Ile-Ser-(Gly)Thz-Ile-Ser-(Gly)Thz)) are reported. All of these cyclic peptides and PatN (cyclo-(Ile-Ser-(Gly)Thz-Ile-Thr-(Gly)Thz)) are derivatives of patellamide A and have a [24]azacrown-8 macrocyclic structure. All four synthetic cyclic peptides have two thiazole rings but, in contrast to patellamide A, no oxazoline rings. The molecular structure of PatJ(1), determined by X-ray crystallography, has a saddle conformation with two close-to-coparallel thiazole rings, very similar to the geometry of patellamide D. The two coordination sites of PatJ(1) with thiazole-N and amide-N donors are each well preorganized for transition metal ion binding. The coordination of copper(II) was monitored by UV/Vis spectroscopy, and this reveals various (meta)stable mono- and dinuclear copper(II) complexes whose stoichiometry was confirmed by mass spectra. Two types of dinuclear copper(II) complexes, [Cu(2)(H(4)L)(OH(2))(n)](2+) (n=6, 8) and [Cu(2)(H(2)L)(OH(2))(n)] (n=4, 6; L=PatN, PatL, PatJ(1), PatJ(2)) have been identified and analyzed structurally by EPR spectroscopy and a combination of spectra simulations and molecular mechanics calculations (MM-EPR). The four structures are similar to each other and have a saddle conformation, that is, derived from the crystal structure of PatJ(1) by a twist of the two thiozole rings. The small but significant structural differences are characterized by the EPR simulations.     

Structure and sorption properties of vinylpyridine ion exchangers of different hydrophilic nature,containing copper and silver,based on EPR data

EPR was used to establish the structure of Cu²⁺ coordination centers in macroporous cross-linked polyvinylpyridines in the presence of Ag⁺ ions. The influence of a change in the hydrophilic nature of the polymer matrix, of the concentration of sorbed copper and silver ions, and of the moisture content of the samples on the formation and distribution of different forms of copper complexes has been determined. It has been shown that in the case of competition between Ag⁺ and Cu²⁺ for the ligand groups of the ion exchanger the formation of Ag⁺ coordination centers predominates. The coordination centers of copper are partially destroyed by forming hydrate and solvate complexes which are easily removed from the ion-exchanger matrix. The analysis of the integral intensities of the EPR spectra has given a quantitative estimation of the change in the content of Cu²⁺ coordination centers in the ion-exchanger matrix.Translated from Teoreticheskaya i Éksperimental'naya Khimiya, Vol. 26, No. 4, pp. 462–468, July–August, 1990.     

On the structure of copper(II) coordination compounds with L-histidine

Quantum chemical calculations are performed for the spatial and electron structure of complex compounds of L-histidine and its ionized forms with copper(II) for a variety of compositions within the density functional theory (DFT) using the B3LYP functional and 6-311G(d) basis. The solvent (water) is considered within the PCM approximation. EPR spectroscopy is used to study the equilibrium in the copper(II)–L-histidine system in an aqueous solution at рН 2–11. A comparison between the theoretical calculations and the EPR spectra suggests the following geometry for the coordination environment of the copper(II) ion in the complex compounds: CuHLL–square-planar coordination; CuL₂, CuHLL′, and CuLL′–distorted square pyramid; and CuL₂′–octahedral environment.     

Anion binding to a tetracopper resorcinarene-based complex

UV–vis and electron paramagnetic resonance (EPR) spectroscopic studies have been carried out on the multinuclear copper(II) complex Cu₄BpaRes. The copper atoms are in a tetragonal distorted geometry with nitrogens from bispicolylamine (Bpa) coordinating in the equatorial plane and water molecules or anions completing four coordination sites. The interaction of anions with this polynuclear copper complex in aqueous solution supports the formation of different complex species, which depend on the type and the concentration of the anions. In the presence of excess anions, frozen solution EPR parameters show the formation of species in which the in-plane coordination is characterised by the presence of three nitrogen atoms coming from the ligand and a donor atom from the specific anion. For the bidentate anion ligands and especially for malonate, UV–vis titrations indicate the formation of a 1:4 (Cu₄BpaRes:anion) species. EPR experiments support the formation of such a species and indicate that the four copper centres are equivalent and reach penta-coordination via the coordination of both oxygens from the bidentate ligand.     

Spectroscopic characterizations of bridging cysteine ligand variants of an engineered Cu2(Scys)2 CuA azurin

Bridging cysteine ligands of the Cu(A) center in an engineered Cu(A) azurin were replaced with serine, and the variants (Cys116Ser and Cys112Ser Cu(A) azurin) were characterized by mass spectrometry, as well as UV-vis and electron paramagnetic resonance (EPR) spectroscopic techniques. The replacements resulted in dramatically perturbed spectroscopic properties, indicating that the cysteines play a critical role in maintaining the structural integrity of the Cu center. The replacements at different cysteine residues resulted in different perturbations, even though the two cysteines are geometrically symmetrical in the primary coordination sphere with respect to the two copper ions. The Cys112Ser variant contains two distinct type 2 copper centers, while the Cys116Ser variant has one type 1 copper center with slight tetragonal distortion. Both the UV-vis and EPR spectra of the Cys116Ser variant change with pH, and the pK(a) of the transition is 6.0. A type 1 copper EPR spectrum with A(||) = 26 G was obtained at pH 7.0, while a type 2 copper EPR spectrum with A(||) = 140 G was found at pH 5.0. Interestingly, lowering the temperature from 290 to 85 K resulted in conversion of the Cys116Ser variant from a type 1 copper center to a type 2 copper center, suggesting rearrangement of the ligand around the copper or binding of an exogenous ligand at low temperature. This difference in mutation effects at different cysteines may be due to different constraints exerted on the two cysteines by hydrogen-bonding patterns in the ligand loop.     

Copper(II) complex formation with a linear peptide encompassing the putative cell binding site of angiogenin

Angiogenin is one of the more potent angiogenic factors known, whose activity may be affected by the presence of copper ions. Copper(II) complexes with the peptides encompassing the putative endothelial cell binding domain of angiogenin, Ac-KNGNPHREN-NH(2) and Ac-PHREN-NH(2), have been characterized by potentiometric, UV-vis, CD and EPR spectroscopic methods. The coordination features of all the copper complex species derived by both peptides are practically the same, as predictable because of the presence of a proline residue within their aminoacidic sequence. In particular, Ac-PHREN-NH(2) is really the aminoacidic sequence involved in the binding to copper(II). Thermodynamic and spectroscopic evidence are given that side chain oxygen donor atom of glutamyl residue is involved in the copper binding up to physiological pH. EPR parameters suggest that the carboxylate group is still involved also in the predominant species [Cu(L)H(-2)], the metal coordination environment being probably formed by N(Im), 2N(-), H(2)O in equatorial plane and an oxygen atom from COO(-) in apical position, or vice versa, with the carboxylate oxygen atom in the copper coordination plane and the water molecule confined to one of the apical positions. Moreover, the comparison with the thermodynamic and spectroscopic results in the case of the copper(ii) complex species formed by the single point mutated peptide, Ac-PHRQN-NH(2), provides further evidence of the presence of carboxylate oxygen atom in the copper coordination sphere.     

Analysis of the covalent bonding and EPR parameters of dendrimeric liquid-crystal copper(II) complexes

Experimental EPR data for copper(II) complexes with liquid-crystal poly(propylenimine) den-drimers were analyzed. The influence of the pseudotetrahedral distortion of the nearest environment of the copper ion on the parameters of the EPR spectra was considered. The covalent bond parameters were calculated from the EPR data. The dependence of the delocalization of the unpaired electron of the copper ion on the pseudotetrahedral distortion of its coordination unit was determined. The behavior of the Zeeman coupling parameters was discussed. Various contributions to the components of the hyperfine coupling (HFC) tensor were calculated. The causes of the changes in the HFC parameters in the distorted complexes were dis cussed.     

Spectrochemical Properties of Noncubical Transition Metal Complexes in Solutions. XV. Solution Properties of bis(Salicylideneaniline)Copper(II)

The complex obtained by condensation of salicylideneaniline with copper(II) acetate was studied in a variety of solvents. This deep-brown crystalline compound is soluble in common solvents, such as, chloroform, toluene, dioxane, methanol, ethanol, dimethyl formamide, dimethyl sulfoxide, and acetonitrile—a necessary condition for observing solvatochromism. The complex has been characterized by elemental analysis, molar conductivity, EPR, and ultraviolet (UV) and visible (VIS) spectroscopy. The available X-ray data shows planar coordination geometry for the copper center. Combined multi-technique experiments have been applied to confirm the structure of the complex in solution. The molar conductivities indicate nonelectrolytic properties. EPR measurements preclude the possibility of solvent coordination at the axial positions of the complex. Spectroscopic measurements were used to study the coordination properties of donor atoms and their bonding ability, as well as trichromaticity coordinate calculations. The results obtained show that the interactions of metal with donors depend on donor strength and polarity of solvent.     

Copper(II) coordination chemistry of westiellamide and its imidazole, oxazole, and thiazole analogues

The copper(II) coordination chemistry of westiellamide (H(3)L(wa)), as well as of three synthetic analogues with an [18]azacrown-6 macrocyclic structure but with three imidazole (H(3)L(1)), oxazole (H(3)L(2)), and thiazole (H(3)L(3)) rings instead of oxazoline, is reported. As in the larger patellamide rings, the N(heterocycle)-N(peptide)-N(heterocycle) binding site is highly preorganized for copper(II) coordination. In contrast to earlier reports, the macrocyclic peptides have been found to form stable mono- and dinuclear copper(II) complexes. The coordination of copper(II) has been monitored by high-resolution electrospray mass spectrometry (ESI-MS), spectrophotometric and polarimetric titrations, and EPR and IR spectroscopies, and the structural assignments have been supported by time-dependent studies (UV/Vis/NIR, ESI-MS, and EPR) of the complexation reaction of copper(II) with H(3)L(1). Density functional theory (DFT) calculations have been used to model the structures of the copper(II) complexes on the basis of their spectroscopic data. The copper(II) ion has a distorted square-pyramidal geometry with one or two coordinated solvent molecules (CH(3)OH) in the mononuclear copper(II) cyclic peptide complexes, but the coordination sphere in [Cu(H(2)L(wa))(OHCH(3))](+) differs from those in the synthetic analogues, [Cu(H(2)L)(OHCH(3))(2)](+) (L = L(1), L(2), L(3)). Dinuclear copper(II) complexes ([Cu(II) (2)(HL)(mu-X)](+); X = OCH(3), OH; L = L(1), L(2), L(3), L(wa)) are observed in the mass spectra. While a dipole-dipole coupled EPR spectrum is observed for the dinuclear copper(II) complex of H(3)L(3), the corresponding complexes with H(3)L (L = L(1), L(2), L(wa)) are EPR-silent. This may be explained in terms of strong antiferromagnetic coupling (H(3)L(1)) and/or a low concentration of the dicopper(II) complexes (H(3)L(wa), H(3)L(2)), in agreement with the mass spectrometric observations.     

EPR-Untersuchungen am Kupfer(II)-Chelat einesα-Cyano-β-amino-dithioacrylsäureesters

EPR Investigations on a Copper Chelate of anα-Cyano-β-amino-dithioacryl Acid Ester EPR studies on copper(II) chelates of anα-cyano-β-amino-dithioacryl acid ester are reported. The EPR spectra were obtained from solutions, diamagnetically diluted powders, and single-crystals which are stable for a short time only. The corresponding nickel(II) chelate was used as host lattice. The ¹⁴N ligand hyperfine structure observed in the spectra is in agreement with a [CuN₂S₂] coordination sphere. In some orientations of the recorded angular dependencies the EPR spectra show a hyperfine splitting due to the interaction of the unpaired electron with the N? H protons. In addition spin flip satellite lines are observed in the single-crystal spectra. The g, A^Cu and A^N tensors obtained from the powder and single-crystal spectra have an axial symmetry within the experimental errors. The unpaired electron occupies a MO which consists mainly of the copper 3d_xy and the corresponding donor atom orbitals. The co-valency of the metal ligand bond is very high.     

Electron paramagnetic resonance structure investigation of copper complexation in a hemicarcerand

The double-bridged hemicarcerand [A,B-(CH2OH)2-cavitand]-(CH2NHCH2)2-[A,B-(CH2OH)2-cavitand] 23 (and several other related compounds) was synthesized by the condensation of the two complementary precursors A,B-(CH2NH2)2(CH2OH)2-cavitand and A,B-(CH2Br)2(CH2OAc)2-cavitand followed by hydrolysis of the acetate groups. This hemicarcerand has nitrogen and oxygen donor atoms located on the interior of the spherical cavity and thus allows endohedral coordination of metal ions. The cavity has a volume of approximately 0.12 nm3, a value obtained by calculating a Connolly-type contact surface and the molecular electrostatic potential. The Cu2+ complex of hemicarcerand 23 was studied in detail by EPR and DFT calculations at the UB3LYP/6-31G level to verify the anticipated endohedral nature of the metal complex. It could be shown that the copper ion is coordinated to four oxygen donor atoms and no deviation from axial symmetry at the copper site could be detected. No direct coordination to nitrogen atoms of the hemicarcerand could be observed; however, complexation with DMF solvent molecules was detected by ESEEM and HYSCORE experiments. The closed structure of the hemicarcerand was also confirmed by an evaluation of proton-copper distances. Results from DFT calculations are in accord with the EPR results, and further support suggested coordination of the Cu(II) within the hemicarcerand cavity by four oxygen donor atoms.     

Studies of nitric oxide interaction with mono- and dinuclear copper(II) complexes of prion protein bis-octarepeat fragments

The interaction of nitric oxide with copper(ii) complexes of two octarepeat sequences belonging to the prion protein was studied, considering both mononuclear and dinuclear systems, i.e. Cu-Ac-(PHGGGWGQ)(2)-NH(2) and Cu(2)-Ac-(PHGGGWGQ)(2)-NH(2), respectively. The NO interaction with both systems was followed in aqueous solutions at physiological pH value, by using UV-Vis and EPR spectroscopic techniques as well as cyclic voltammetry. The mechanism of NO interaction with the mononuclear copper complex can be considered similar to that previously observed for the analogous copper systems with Ac-HGGG-NH(2) and Ac-PHGGGWGQ-NH(2). A more complicated behaviour was found with the copper dinuclear system, in which the involvement of two different intermediate complex species was evidenced. A positive cooperativity between the two copper ions, in the reduction process was inferred. When working with a large excess of the Ac-(PHGGGWGQ)(2)-NH(2) ligand, the frozen-solution EPR parameters pertain to the well characterized [Cu(N(im))(4)](2+) unit, which did not exhibit any interaction with NO. The presence of a free coordination site is the necessary requirement for the NO interaction to occur, as found only in the square-pyramidal geometry of [Cu(L)H(-2)] or [Cu(2)(L)H(-4)] complex species, which form when copper and ligand concentrations are similar.     

Nitric oxide reduction of copper(II) complexes: spectroscopic evidence of copper(II)-nitrosyl intermediate

Two copper(II) complexes, 1 and 2 with L(1) and L(2) [L(1) = 2- aminomethyl pyridine; L(2) = bis-(2-aminoethyl)amine], respectively, in degassed acetonitrile solvent, on exposure to NO gas, were found to form a thermally unstable [Cu(II)-NO] intermediate which then resulted in the reduction of the copper(II) centers. The formation of the [Cu(II)-NO] intermediate was evidenced by UV-visible, FT-IR, and EPR spectroscopic studies. The reduction of the copper(II) centers by nitric oxide afforded ligand transformation through diazotization at the primary amine coordination site, in both cases. The modified ligands, in each case, were isolated and characterized.     

Anisotropic quantum spin fluid and quantum spin glass in La cuprate-based catalyst

Evidence of quantum spin fluid and of quantum spin glass behaviour has been detected by extended EPR analysis in some La-cuprate catalysts of general formula La_2−xEu_xCuO_{4 + δ}. Some features of the EPR spectrum, appearing in a few cases, are also discussed and attributed to a pseudo Jahn-Teller effect due to a particular coordination of up to five oxygen ions around surface copper ions at low temperature.     

EPR spectra and structures of dinuclear copper(<Emphasis Type="SmallCaps">II</Emphasis>) complexes with acyldihydrazones of benzenedicarboxylic acids

Spacer-armed dinuclear copper(II) complexes with condensation products of isophthalic and terephthalic acid dihydrazides with salicylaldehyde and 2-hydroxyacetophenone were synthesized and studied by EPR and X-ray diffraction. The compositions and structures of most of the complexes were determined by elemental analysis, thermogravimetric analysis, and IR spectroscopy. The structure of the copper(II) complex with acyldihydrazone of salicylaldehyde and 1,3-benzenedicarboxylic acid (H₄L) with the composition [Cu₂L¹·2morph·MeOH] (morph is morpholine) was established by X-ray diffraction. The Cu^II atoms are spaced by 10.29 Å and are structurally nonequivalent. One copper cation has a square-planar coordination formed by donor atoms (2 N + O) of the doubly deprotonated acylhydrazine fragment and the N atom of the morpholine molecule. The second copper atom is additionally coordinated by a methanol molecule through the oxygen atom, so that this copper atom is in a tetragonal-pyramidal coordination with the oxygen atom in the axial position. The EPR spectra of liquid solutions of the complexes based on 1,4-benzenedicarboxylic acid acyldihydrazones and 1,3-benzenedicarboxylic acid bis(salicylidene)hydrazone at room temperature show a four-line hyperfine structure with the constant a _Cu = 54.4–67.0·10⁻⁴ cm⁻¹ (g = 2.105–2.147), which is indicative of the independent behavior of the paramagnetic centers. The EPR spectrum of a solution of the complex based on isophthalic acid and 2-hydroxyacetophenone shows the seven-line hyperfine structure corresponding to two equivalent copper nuclei (g = 2.11, a _Cu = 36.5·10⁻⁴ cm⁻¹). Published in Russian in Izvestiya Akademii Nauk. Seriya Khimicheskaya, No. 10, pp. 1898–1905, October, 2007.     

De novo design and spectroscopic characterization of a dinucleating copper-binding pentadecapeptide

A spectroscopic study of aqueous solutions of Ac-WGHGHGHGPGHGHGH-NH(2) (HGP) indicates that copper(II) binds to the peptide to form a 2:1 Cu(2+)/HGP complex with four nitrogen atoms in the copper coordination environment. Electron paramagnetic resonance (EPR) and UV-visible data suggest copper binding through the peptide backbone and imidazole nitrogen donors. Circular dichroism data show that HGP is unbound below pH 5.5 and is copper-saturated at pH 9 and above. The apo form of the peptide is unstructured in solution and is organized into a turn conformation in the presence of 2 mol equiv of Cu(2+) at basic pH. EPR measurements for 2:1 Cu(2+)/HGP solutions in the g = 2 region and within the pH range 7-11 exhibit axial spectra. A molecular-mechanics-minimized model of the Cu(2+)/HGP complex gave a Cu...Cu separation of 8 A.     

Crystal structures of the N-salicylidene–L-serinatoaquacopper(II) monohydrate and its ternary derivative with 2-aminopyridine

The complexes [Cu(Sal–(L-Ser))H₂O]⋅H₂O 1 and [Cu(Sal–Ser)(2-amino pyridine)] 2 have been prepared and their crystal structures determined. In 1 the copper(II) has a square-pyramidal geometry, being coordinated to the tridentate Sal–(L-Ser) Schiff base ligand and the oxygen atom (O(16)) of one water molecule occupying the corners of a square. The coordination sphere about the copper is completed by an axial O(12) atom of an hydroxyl group belonging to an adjacent complex unit. In the racemic ternary complex 2 the metal atom has a square-planar coordination with O,N,O atoms of the tridentate Sal–Ser dianion and the heterocyclic N atom of the 2-aminopyridine. Spectroscopic data are discussed.