Selective recognition of dihydrogen phosphate by receptors bearing pyridyl moieties as hydrogen bond acceptors

Dihydrogen phosphate anion is selectively recognized by amide-based receptors bearing pyridyl moieties as hydrogen bond acceptors in 0.5% DMSO-acetonitrile.     

Isocyanides as hydrogen bond acceptors

A theoretical study of the capability of hydrogen isocyanide (HNC) as a hydrogen bond acceptor has been carried out. The geometry, interaction energy and electronic properties of the corresponding complexes with HF, HCl, HBr, H₂O, NH₃, HCCH, HCN and HNC itself indicate that it is able to form strong hydrogen bonds. A search in the Cambridge Structural Database has shown the presence of isocyanides involved in hydrogen bonds in solid phase. Finally, the comparison of the properties of HNC with its isomer, hydrogen cyanide, shows strong similarities between both compounds. Received: 13 October 1997 / Accepted: 11 December 1997     

Proton affinity correlations for alkyl chlorides

Ab initio SCF calculations with minimal STO-3G and extended 44-31G basis sets have been performed on the simple alkyl chlorides, HCl to t-BuCl, and their protonated analogs. MINDO/3 calculations are also reported for these species and a variety of cyclic and bicyclic chlorides. The much closer agreement with experiment for STO-3G proton affinities than for 44-31G values is in sharp contrast to the results for first-row bases. An excellent correlation is found between both the STO-3G and MINDO/3 proton affinities and the charge on the CIH fragment in RCIH⁺. For the acyclic chlorides, correlations of PA's with the polar substituent constant, σ*, and IP's are also reasonable. In addition, the calculated carbonium ion-HCl interaction energy for t-BuClH⁺ indicates that protonated tertiary chlorides are no more than marginally stable in the gas phase.     

Pi-systems as simultaneous hydride and hydrogen bond acceptors

A theoretical study of the hydride bond complexes with tetrafluoro- and tetracyanoethylene, C2F4 and C2(CN)4, has been carried out by means of density functional theory (DFT) and ab initio methods, up to the MP2/aug-cc-pVTZ computational level. In addition, the ternary complexes formed by an additional standard hydrogen bond donor, such as hydrogen fluoride, have been explored. The results show that the hydride bond complexes are stable and an electron transfer took place from the hydride to the C2F4 and C2(CN)4 molecules. While these molecules are not able to form stable complexes between the pi-electrons and hydrogen bond donors, the presence of the hydrides in the opposite face of the pi-system of C2F4 stabilizes the ternary complexes showing cooperativity effects.     

2-alkyl-5-aryltetrazoles as hydrogen bond acceptors

The dissociation constants of the H-complexes formed by 2-alkyl-5-aryltetrazoles and p-fluorophenol in carbon tetrachloride (pK _HB 0.9–1.3) were determined by Fourier-transform IR spectroscopy. 2-Alkyl-5-aryltetrazoles were found to act as medium-strength hydrogen bond acceptors comparable with diazines. The thermodynamic parameters of the equilibrium formation of H-complex with 2-isopropyl-5-phenyltetrazole were determined. The electronic nature of substituents in the tetrazole ring only slightly affects the pK _HB values of tetrazoles.     

Proton and deuterium NMR of hydrogen bonds: Relationship between isotope effects and the hydrogen bond potential

The difference in chemical shift between hydrogen bonded protons and deuterons has been examined both theoretically and experimentally. It is shown that valuable information about the hydrogen bond potential can be extracted from this isotope effect on chemical shifts.     

Proton tunnelling in the intramolecular hydrogen bond of 9-Hydroxyphenalenone

Inelastic neutron scattering spectra of the 9-hydroxyphenalenone and ring deuterated analogue reveal an intense band at 91 cm⁻¹ with all characteristics anticipated for a tunnelling the transition of a (quasi)symmetric double minimum potential for proton transfer along the intramolecular hydrogen bond. This frequency is compared to those previously reported for similar systems.     

Proton potentials for widely varied hydrogen bond lengths in a water dimer

Potential curves for the proton of a hydrogen bond in (H_2O)₂ with H-bond lengths R varied from 2.38 to 5.19 å are found using the semiempirical potential function suggested earlier. Energy levels and wave functions are obtained for the ground and the two lowest excited states. The (H₂O)2 molecule is taken as a model system approximating processes in a nucleotide pair after an ultraviolet energy quantum has been absorbed and transformed to heat. The results are used to construct the theory of potential mutations that take place during UV irradiation of DNA.     

Theoretical study of hydrogen and dihydrogen bond interaction of B6H10 with the HF molecule

Ab initio calculations were used to analyze the interactions of B₆H₁₀ with an HF molecule at the MP2/6-311++g(d,p) and B3LYP/6-311++g(d,p) computational levels. B₆H₁₀ could interact with HF through both its terminal (H_t) and bridged (H_b) hydrogens. The interaction of H_t and H_b of B₆H₁₀ with HF could result in the formation of H_t···H and H_b···F dihydrogen and hydrogen bond complexes, respectively. The obtained structures have been analyzed with the Atoms in Molecules methodology.     

Weak dihydrogen bond interactions in organic crystals

Database analysis on H ? H interactions of the type CH₂ ? H₂C and N-H ? H-N in organic crystals substantiate the occurrence of dihydrogen bonds in the absence of metal atoms.     

Toward modeling H-NOX domains: a DFT study of heme-NO complexes as hydrogen bond acceptors

Density functional theory calculations (PW91/STO-TZP, including basis-set superposition error corrections) have been used to evaluate hydrogen bond energies of five- and six-coordinate heme-NO complexes with phenol and imidazole, chosen as models for distal pocket tyrosine and histidine residues. The calculated interaction energies are approximately 2 kcal/mol for phenol and 3-4 kcal/mol for imidazole, which are 2-4 times smaller than the energies calculated for heme-O(2) complexes hydrogen-bonding with a distal histidine. Interestingly, the hydrogen bond energies are found to be very similar for five- and six-coordinate heme-NO complexes, which may be viewed as contrary to the interpretation of a recent observation on a bacterial H-NOX (Heme-Nitric oxide/OXygen-binding) protein with sequence homology to mammalian-soluble guanylate cyclase.     

1,3-Diindolylureas: high affinity dihydrogen phosphate receptors

Neutral 1,3-di(1H-indol-7-yl)ureas are selective dihydrogen phosphate receptors in polar solvent mixtures (DMSO-d(6)-25% water).     

Proton affinities of borane-amines: consequences on dihydrogen bonding

The calculated proton affinities of four borane-amines using Gaussian-2 theory have been found to be comparable to conventional bases such as water, methanol, and ammonia. On the other hand the structure of protonated borane-ammonia, [HBH(3)-NH(3)](+), is found to be drastically different from that of protonated ammonia, [HNH(3)](+), and can appropriately be described as a eta(2)-H(2) complex with [BH(2)-NH(3)](+) molecular cation. Further, the proton affinities of borane-amines are related to the ease of H(2) elimination.     

Spectroscopic and theoretical evidence for the cooperativity between red-shift hydrogen bond and blue-shift hydrogen bond in DMSO aqueous solutions

The cooperativity between red-shifted hydrogen bond and blue-shifting hydrogen bond in dimethyl sulfoxide aqueous solutions was studied by methods of quantum chemical calculations and infrared spectroscopy. The water molecule plays a different role in two types of hydrogen bonds: proton-donor in red-shifted hydrogen bond and proton-acceptor in blue-shifting hydrogen bond. The cooperativity is not prominent if the ring structure is formed through the OHcdots, three dots, centeredOS H-bond and CHcdots, three dots, centeredO(w) H-bond. However, if the methyl groups in the above ring structure participate in second CHcdots, three dots, centeredO(w) H-bond, the cooperativity is increased. The second CHcdots, three dots, centeredO(w) H-bond enhances OHcdots, three dots, centeredOS H-bond and weakens the first CHcdots, three dots, centeredO(w) H-bond.     

Interplay between hydrogen bond formation and multicenter pi-electron delocalization: intermolecular hydrogen bonds

The interplay between aromatic electron delocalization and intermolecular hydrogen bonding is thoroughly investigated using multicenter delocalization analysis. The effect on the hydrogen bond strength of aromatic electron delocalization within the acceptor and donor molecules is determined by means of the interaction energies between monomers, calculated at the B3LYP/6-311++G(d,p) level of theory. This magnitude is compared to variations of multicenter electron delocalization indices and covalent hydrogen bond indices, which are shown to correlate perfectly with the relative values of the interaction energies for the different complexes studied. The multicenter electron delocalization indices and covalent bond indices have been computed using the quantum theory of atoms in molecules approach. All the hydrogen bonds are formed with oxygen as the acceptor atom; however, the atom bonded to the donor hydrogen has been either oxygen or nitrogen. The water-water complex is taken as reference, where the donor and acceptor molecular environments are modified by substituting the hydrogens and the hydroxyl group by phenol, furan, and pyrrole aromatic rings. The results here shown match perfectly with the qualitative expectations derived from the resonance model.