Structure and properties of isolated liquid crystal molecules: jet spectroscopy and ab initio calculations of 4-cyanobiphenyl

We explore the structure, torsional frequencies and electronic properties of the gas phase 4-cyanobiphenyl molecule, a prototypical liquid crystal core fragment, in its ground and first excited singlet electronic states. We employ a methodology which combines ab initio quantum mechanical calculations and fluorescence spectroscopy of laser-desorbed, jet-cooled molecules. The aim is to test the predictive power of parameter-free calculations of structure and dynamics in an experimental environment which is similar to the computational conditions of low thermal activation and negligible intermolecular interaction. Both spectroscopic and computational results indicate that very large molecular conformational changes accompany the optical pi → pi* transition. These are found to have a significant influence on the molecular flexibility and electronic polarity.     

Three-dimensional orientation of the Qy electronic transition dipole moment within the chlorophyll a molecule determined by femtosecond polarization resolved VIS pump-IR probe spectroscopy

Chlorophyll a (Chl a) is the most abundant pigment on earth. In all plants, algae, and cyanobacteria, it plays a pivotal role as an antenna and reaction center pigment in the primary steps of photosynthesis. In the past, a true three-dimensional (3D) experimental determination of the Qy electronic transition dipole moment orientation could not be obtained. With combined femtosecond polarization resolved VIS pump-IR probe experiments and theoretical calculations of the infrared transition dipole moments (tdm's) in the electronic ground state, we determined the 3D orientation of the Qy electronic tdm of Chl a within the molecular structure. Polarization resolved experiments provided angles of the Qy electronic tdm with three different infrared tdm's, whose orientations within the molecular structure were taken from our theoretical calculations. The orientation of the Qy tdm results from the intersection of all three angles and was found to have an angle of (78 +/- 3)degrees with the x-axis, (12 3)degrees with the y-axis, and (86 +/- 2)degrees with the z-axis.     

Photoinduced Rydberg ionization spectroscopy of the B state of benzonitrile cation

Photoinduced Rydberg ionization (PIRI) spectra of the second excited electronic state of benzonitrile cation were recorded via the origin and 6a1 and 6b1 vibrational levels of the cation ground electronic state. This B<--X transition was verified to be a forbidden 2B2<--2B1 transition with an origin at 17,225 cm-1 above the ground ionic state. By the use of vibronic coupling calculations, as well as symmetry analysis and comparison of the PIRI spectra via different ground vibrational levels, a nearly complete assignment of the vibrational structure was made, and the vibrational frequencies of the B 2B2 state of benzonitrile cation were obtained based on the assignments. Comparisons of the experimental spectra with simulations from the vibronic structure calculations are also used to validate the theoretical procedures used in the simulations.     

Theoretical study of the Fe(phen)(2)(NCS)(2) spin-crossover complex with reparametrized density functionals

The theoretical study of spin-crossover compounds is very challenging as those parts of the experimental findings that concern the electronic structure of these compounds can currently hardly be reproduced because of either technical limitations of highly accurate ab initio methods or because of inaccuracies of density functional methods in the prediction of low-spin/high-spin energy splitting. However, calculations with reparametrized density functionals on molecules of the thermal spin-crossover type can give improved results when compared with experiment for close-lying states of different spin and are therefore important for, e.g., transition metal catalysis. A classification of transition metal compounds within hybrid density functional theory is given to distinguish standard, critical, and complicated cases. From the class of complicated cases we choose the prominent spin-crossover compound Fe(phen)(2)(NCS)(2) and show in a first step how the electronic contribution to the energy splitting can be calculated. In a second step, the vibrational effects on the spin flip are investigated within the harmonic force-field approximation of the isolated-molecule approach. A main result of the study is the necessity of exact-exchange reduction in hybrid density functionals to arrive at reasonable electronic energy splittings. The study resolves problems that originated from the use of standard density functionals, which are not able to reproduce the electronic contribution to the low-spin/high-spin splitting correctly, and demonstrates to which extent reparametrized density functionals can be used for the prediction of the spin-crossover effect.     

Characterization of the electronic structure of C50Cl10 by means of soft x-ray spectroscopies

The electronic structure of the last synthesized fullerene molecule, the C50Cl10, has been characterized by theoretical simulation of x-ray photoelectron spectroscopy, ultraviolet photoelectron spectroscopy, and near-edge x-ray-absorption fine structure. All the calculations were performed at the gradient-corrected and hybrid density-functional theory levels. The combination of these techniques provides detailed information about the valence band and the unoccupied molecular orbitals, as well as about the carbon core orbitals.     

Probing actinide electronic structure using fluorescence and multi-photon ionization spectroscopy

The role of the 5f orbitals in actinide bond formation is one of the central issues of actinide chemistry. This question can be explored using relativistic quantum chemistry calculations, but the theoretical methods must be validated using definitive experimental data. For simple ionic compounds such as actinide oxides and halides, the electronic structure can be examined using electronic and photoelectron spectroscopy of gas phase molecules. The present article surveys recent spectroscopic and theoretical studies of the oxides of thorium and uranium. The results show that the 5f-like states are spectators and that the complex patterns of low-lying electronic states for these molecules can be understood in terms of a semi-empirical ligand field model. Comparisons with recent high-level theoretical calculations are presented and discussed.     

Dipole moment and rovibrational intensities in the electronic ground state of NH3: bridging the gap between ab initio theory and spectroscopic experiment

We report theoretical values for the transition moments of an extensive set of vibrational bands in the electronic ground state of (14)NH(3). For selected bands, we have further made detailed simulations of the rotational structure. The calculations are carried out by means of recently developed computational procedures for describing the nuclear motion and are based on a high-level ab initio potential energy surface, and high-level dipole moment surfaces, for the electronic ground state of NH(3). The reported theoretical intensity values are compared to, and found to agree very well with, corresponding experimental results. It is believed that the computational method, in conjunction with high-quality ab initio potential energy and dipole moment surfaces, can simulate rotation-vibration spectra of XY(3) pyramidal molecules prior to observation with sufficient accuracy to facilitate the observation of these spectra. By degrading the accuracy of selected elements of the calculations, we have also investigated the influence of customary approximations on the computed intensity values.     

On the ordering of the first two excited electronic states in all-trans linear polyenes

Reported experimental evidence of the relative position of the first two excited electronic states in linear polyenes was carefully examined and compared with that derived from time dependent density functional theory (TDDFT) theoretical calculations performed at the B3LYP level on optimized geometries. The energy values for the first two triplet states 3Bu and 3Ag, obtained from TDDFT calculations, were found to be highly strongly correlated with the experimental values. Also, the theoretical calculations for the electronic transition 1 1Ag --> 1 1Bu were also extremely well correlated with their experimental counterparts; even more important, the three reported experimental data for 1 1Ag --> 2 1Ag transitions in these systems conformed to the correlation for the TDDFT 1 1Ag --> 1 1Bu transition. The first excited electronic state in the linear polyenes studied (from ethene to the compound consisting of 40 ethene units, P40) was found to be 1Bu. The energy gap between the excited states 2 1Ag and 1 1Bu decreased with increasing length of the polyene chain, but not to the extent required to cause inversion, at least up to P40. In the all-trans linear polyenes studied, the widely analyzed energy gap from the ground electronic state to the first excited singlet state for infinitely long chains may be meaningless as, even in P40, it is uncertain whether the ground electronic state continues to be a singlet.     

Variational optimization of effective atom centered potentials for molecular properties

In plane wave based electronic structure calculations the interaction of core and valence electrons is usually represented by atomic effective core potentials. They are constructed in such a way that the shape of the atomic valence orbitals outside a certain core radius is reproduced correctly with respect to the corresponding all-electron calculations. Here we present a method which, in conjunction with density functional perturbation theory, allows to optimize effective core potentials in order to reproduce ground-state molecular properties from arbitrarily accurate reference calculations within standard density functional calculations. We demonstrate the wide range of possible applications in theoretical chemistry of such optimized effective core potentials (OECPs) by means of two examples. We first use OECPs to tackle the link atom problem in quantum mechanics/molecular mechanics (QM/MM) schemes proposing a fully automatized procedure for the design of link OECPs, which are designed in such a way that they minimally perturb the electronic structure in the QM region. In the second application, we use OECPs in two sample molecules (water and acetic acid) such as to reproduce electronic densities and derived molecular properties of hybrid (B3LYP) quality within general gradient approximated (BLYP) density functional calculations.     

Near edge X-ray absorption fine structure spectroscopy of bacterial hydroxamate siderophores in aqueous solutions

X-ray absorption spectroscopy (XAS) is widely used to explore the coordination environments and structures of metal complexes in aqueous solutions and disordered phases. Although soft-XAS studies on gaseous phases, solid phases and their interfaces have shown that XAS is a versatile tool in studying the functional group composition of organic molecules, the application of XAS to studying aqueous solutions is seriously limited because of experimental difficulties. In this report, using a modified synchrotron endstation geometry, we show how soft-XAS was used to study the changes in electronic states of reactive functional groups in a bacterial macromolecule, desferrioxamine B (desB, a hydroxamate siderophore) and its structural analogue (acetohydroxamic acid (aHa)). We collected C, N, and O near edge X-ray absorption fine structure (NEXAFS) spectra of these molecules in aqueous solutions and complemented their spectral interpretation with calculated X-ray spectra of "hydrated" aHa. The experimental spectra of desB are similar to those for aHa at the C, N, and O K-edges. In addition, the electronic transitions of amide and hydroxamate functional groups in the macromolecule can be distinguished from the N spectra. Small energy differences in the pi*(C=O)NO and the transitions at the C- and N-edges of aHa and desB indicate that the substituent attached to N in desB ((CH2)n) determines the electron density in the (C=O)NO core. As the solution pH increased, the pi*(C=O)NO transition of the hydroxamate group of these two molecules exhibit energy shifts at the C-, N-, and O-edges, which are consistent with increased electron delocalization in the (C=O)NO core of aHa (and desB), predicted from the calculations. The spectra of the aHa(H2O)3- anion also provide evidence for partial N-deprotonation at pH values usually attributed to an O-acid. These results indicate that soft-XAS is well suited for studying the electronic states of different functional groups in aqueous organic macromolecules.     

Theoretical investigation of the electronic properties, and first and second harmonic generation for cadmium chalcogenide

We present the results of the ab initio theoretical study of the electronic properties, and first and second harmonic generation for CdX compounds with zinc-blende structure performed using the full potential linearized augmented plane wave method. Our calculations show that these compounds have similar structures. The valence band maximum and the conduction band minimum are located at Gamma, resulting in a direct energy gap. The energy gap of these compounds decreases when S is replaced by Se and Se by Te, in agreement with the experimental data and previous theoretical work. This can be attributed to the increase in the bandwidth of the conduction bands. The optical spectra are analyzed and the origin of some of the peaks in the spectra is discussed in terms of the calculated electronic structure. Our calculations for the linear optical properties show excellent agreement with the available experimental data.     

Mixed uranium chloride fluorides UF6-nCln and methoxyuranium fluorides UF6-n(OCH3)n: a theoretical study of equilibrium geometries,vibrational frequencies,and the role of the f orbitals

The title compounds, the uranium (VI) fluoride chlorides (UF6-nCln, n = 0-6) and methoxyuranium (VI) fluorides [UF6-n(OCH3)n, n = 0-5], have been studied using relativistic density functional theory. Applying the B3LYP hybrid functional and an effective core potential on uranium, equilibrium geometries have been calculated for these molecules. In addition, harmonic vibrational frequencies have been computed for the chloride fluorides. Calculated frequencies have been compared to experiment where possible. All experimentally observed bands have been assigned, based on these calculations. The average deviation between theoretical and experimental frequencies is 15.6 cm-1 for 23 experimental modes. Theory always underestimates the experimental frequencies. This can be explained by the calculated bond lengths that are somewhat too long. The electronic structure of the uranium (VI) chloride fluorides has been investigated using scalar relativistic calculations and the PW91 functional. Periodic trends in the role and bonding contribution of the uranium 5f orbitals are discussed.     

Ab initio DFT studies of oxygen K edge NEXAFS spectra for the V2O3(0001) surface

Theoretical near edge X-ray absorption fine structure (NEXAFS) spectra describing oxygen 1s core excitation have been evaluated for the differently coordinated oxygen species appearing near the V₂O₃(0001) surface with half metal layer V^′OV termination. Adsorption of oxygen above vanadium centers of the V^′OV terminated surface (O_tV^′O termination) results in very strongly bound vanadyl oxygen, which has also been considered for core excitation in this study. The angle-resolved spectra are based on electronic structure calculations using ab initio density functional theory (DFT) together with model clusters. Experimental NEXAFS spectra for V₂O₃(0001) show a rather strong dependence of peak positions and relative intensities on the photon polarization direction. This dependence is well described by the present theoretical spectra and allows us to assign spectral details in the experiment to specific O 1s core excitations where final state orbitals are determined by the local binding environments of the differently coordinated oxygen centers. As a result, a combination of the present theoretical spectra with experimental NEXAFS data enables an identification of differently coordinated surface oxygen species at the V₂O₃(0001) surface.     

The umbrella motion of core-excited CH3 and CD3 methyl radicals

An accurate experimental and theoretical study of the lowest core excitation of CH(3) and CD(3) methyl radicals is presented. The complex vibrational structure of the lowest band of the x-ray absorption spectrum (XAS) is due to the large variation of the molecular geometry, which is planar in the ground state and pyramidal in the core-excited state. The XAS spectra of the two radicals were recorded at high resolution and assigned by theoretical simulations of the spectra, taking into account the coupling of symmetrical stretching and symmetrical bending (umbrellalike) deformations of the radicals. An excellent agreement between experimental and theoretical spectral profiles allowed us to accurately characterize the vibrational structure of the electronic transition. The similarities, as well as the differences, of the peculiar vibrational progression observed for the two radicals are explained by the strong anharmonicity along the umbrella coordinate and by the isotopic variation, leading to a different probing of the double-well potential energy surface of the core excited state during the nuclear motion.     

Electronic structure, statistical mechanical simulations, and EXAFS spectroscopy of aqueous potassium

We investigate the solvation structure of aqueous potassium ions, using a combination of electronic structure calculations, statistical mechanical simulations with a derived polarizable empirical potential and experimental measurement of the extended X-ray absorption fine structure (EXAFS) spectra. The potassium K-edge (at 3,608 eV) EXAFS spectra were acquired on the bending magnet of sector 20 at the Advanced Photon Source, at ambient conditions and for the concentrations of 1 and 4 m KCl. We focus on the coordination distances and the degree of disorder of the first hydration shell as determined by electronic structure calculations, molecular dynamics simulations and experimental measurement. Finally, we characterize the changes of the structure in the first hydration shell with increasing temperature as predicted by molecular simulation     

Exciton Migration in Conjugated Dendrimers: A Joint Experimental and Theoretical Study

We report a joint experimental and theoretical investigation of exciton diffusion in phenyl‐cored thiophene dendrimers. Experimental exciton diffusion lengths of the dendrimers vary between 8 and 17 nm, increasing with the size of the dendrimer. A theoretical methodology is developed to estimate exciton diffusion lengths for conjugated small molecules in a simulated amorphous film. The theoretical approach exploits Fermi’s Golden Rule to estimate the energy transfer rates for a large ensemble of bimolecular complexes in random relative orientations. Utilization of Poisson’s equation in the evaluation of the Coulomb integral leads to very efficient calculation of excitonic couplings between the donor and the acceptor chromophores. Electronic coupling calculations with delocalized transition densities revealed efficient coupling pathways in the bulk of the material, but do not result in strong couplings between the chromophores which are calculated for more localized transition densities. The molecular structures of dendrimers seem to be playing a significant role in the magnitude of electronic coupling between chromophores. Simulated diffusion lengths correlate well with the experimental data. The chemical structure of the chromophore, the shape of the transition densities and the exciton lifetime are found to be the most important factors in determining the size of the exciton diffusion length in amorphous films of conjugated materials.     

AB initio calculations of the electronic structure and doubling parameters of BS

Ab initio calculations have been performed to understand the influence of spin—orbit interaction upon the fine structure of the observed valence doublet states of the BS molecules: spin—orbit splittings, γ-type and Λ-type doublings. Configuration interaction is shown to be an essential feature in order to account for the observed data. Other properties of the electronic states (transition energies) have also been calculated.