Thermochemical properties of the ammonia-water ionized dimer probed by ion-molecule reactions

The thermochemical properties of some small clusters such as the (H2O)2*+ dimer have already been investigated by both experimental and theoretical methods. The recent method to selectively prepare the ammonia-water ionized dimer [NH3, H2O]*+ (and not its proton transfer isomer [NH4+, OH*]) allowed us to study its chemical reactivity. This study focuses on the charge and proton transfer pathways: Ion-molecule reactions in the cell of an FT-ICR mass spectrometer were carried out with a range of organic compounds. Examination of the reactivity of the [NH3, H2O]*+ ionized dimer versus ionization energy and proton affinity of the neutral reagents shows a threshold in the reactivity in both instances. This leads to a bracketing of thermochemical properties related to the dimer. From these experiments and in agreement with ab initio calculations, the adiabatic recombination energy of the [NH3, H2O]*+ dimer was evaluated at -9.38 +/- 0.04 eV. The proton affinity bracketing required the reevaluation of two reference gas-phase basicity values. The results, in good agreement with the calculation, lead to an evaluation of the proton affinity of the [NH2*, H2O] dimer at 204.4 +/- 0.9 kcal mol(-1). These two experimental values are respectively related to the ionization energy of NH3*+ and to the proton affinity of NH2* by the difference in single water molecule solvation energies of ionized ammonia, of neutral ammonia, and of the NH2* radical.     

Photochemical isomerization reactions of cyanopyrroles: a theoretical study

The mechanisms of the photochemical isomerization reactions were investigated theoretically using a model system of 2-cyanopyrrole and 2-cyano-5-methylpyrrole with the CASSCF (eight-electron/seven-orbital active space) and MP2-CAS methods and the 6-311(d,p) basis set. The structures of the conical intersections, which play a decisive role in such phototranspositions, were obtained. The intermediates and transition structures of the ground state were also calculated to assist in providing a qualitative explanation of the reaction pathways. Our model investigations suggest that the preferred reaction route for the cyanopyrroles is as follows: reactant --> Franck-Condon region --> conical intersection --> photoproduct. In particular, the conical intersection mechanism found in this work gives a better explanation than the previously proposed internal cyclization-isomerization mechanism and supports the experimental observations. In addition, we suggest a simple p-pi orbital topology model, which can be used as a guide tool to predict the location at which conical intersections are likely to occur, as well as the conformations of the phototransposition products of various heterocycles.     

Experimental and theoretical investigations of benzamide oxime

The FT-IR (4000-400 cm(-1)) and FT-Raman (4000-100 cm(-1)) spectral measurements of benzamide oxime and complete assignments of the observed spectra have been proposed. Ab initio and DFT calculations have been performed giving energies, optimized structures, harmonic vibrational frequencies, depolarization ratios, IR intensities, Raman activities and atomic displacements. Furthermore, force field calculations have been performed by normal coordinate analysis. Force field calculations showed that several normal modes are mixed in terms of the internal coordinates. A complete assignment of the observed spectra, based on spectral correlations, electronic structure calculations and normal coordinate analysis, has been provided.     

Phosphorus Schiff base ligand and its complexes: Experimental and theoretical investigations

A phosphorus-containing Schiff base was prepared from bis{3-[2-(4-amino-1,5-dimethyl-2-phenylpyrazol-3-ylideneamino)ethyl]indol-1-ylmethyl}phosphinic acid and paraformaldehyde as a novel antibacterial compound. The reaction of the Schiff base ligand with VO(IV), Ni(II), Co(II), Cu(II), Zn(II), Cd(II), Hg(II), Pd(II) and Pt(IV) led to binuclear species of metal complexes, depending on the ratio of metal ion and ligand. The ligand and its complexes were investigated using elemental analysis, Fourier transform infrared, ¹H NMR, ¹³C NMR, UV–visible and mass spectra, thermogravimetric analysis, conductivity measurements and thermal analysis. The results showed that the Schiff base behaves as a tetradentate ligand; moreover, on the basis of conductance results, of all the prepared complexes are non-electrolytes, excepting the Pt(IV) complex. The metal complexes were found to be formed with a metal-to-ligand ratio of 2:1, except for the Pt(IV) complex with a ratio of 1:1. The activation thermodynamic parameters (ΔE*, ΔH*, ΔS*, ΔG* and K) and the activation energy of thermal decomposition were determined from thermogravimetric analysis using the Coats–Redfern method. The biological activities of the metal complexes were screened against the growth of bacteria and fungi in vitro to assess the antimicrobial potential and study the toxicity of the compounds. The prepared compounds have noteworthy antimicrobial properties.     

Experimental and theoretical investigations for the tandem alkylation-isomerization reactions between unsaturated carboxylic acids and allyl halides

Alkylation of dienediolates from unsaturated carboxylic acids with allylic halides when followed by solventless thermal treatment at 150 to 200°C afford rearranged products on a trend highly dependent on the α carbon substitution. Thus, 2,2-bisallylated acids with H atoms at C-2 lead to its 1,3-shift, whereas 2-methyl-2,2-bisallylated acids lead to the corresponding Cope rearrangement product. In the latter case, this tandem allylation-Cope reaction lead, in a highly regio and diastereoselective way, to products not accessible from direct alkylation. B3LYP/6-31G^∗ energies for the compounds involved at these isomerizations are in reasonable agreement with the experiments, allowing to explain the formation of the more stable product under thermodynamic equilibrations.     

Thermal and catalytic isomerization of exomethylenecycloheptadienes. Experimental and theoretical studies

The intermolecular [3+2+2] cycloaddition reaction of ethyl cyclopropylideneacetate with alkynes proceeded in the presence of a Ni(0)/PPh₃ catalyst, and cycloheptadiene derivatives were obtained. However, in the reaction of 1-cyclopropylidene-2-propanone with phenylacetylene, a cycloheptatriene derivative was isolated. It was anticipated that the isomerization of the initially formed cycloheptadiene derivative led to the formation of the cycloheptatriene derivative. In this paper, we report the isomerization of cycloheptadiene derivatives under thermal, acidic and basic conditions. The stability of the products was also studied by theoretical calculations. The effects of substituents and the mechanism of the isomerization were discussed.     

Interaction of triols with formaldehyde and acetone: Experimental and theoretical study

Experimental and theoretical aspects of the condensation of glycerol and its homologs (1,2,3- and 1,2,4-butanetriols) with formaldehyde and acetone are studied under conditions of acid catalysis. Calculation of the thermodynamic parameters of the resulting products by the composite method CBS-QB3 shows that the six-membered heterocycles, the products of the interaction of triols with formaldehyde, are thermodynamically more stable than the five-membered acetals, while the reaction of the same triols with acetone is preferable for the formation of the five-membered acetals. This is due to the fact that the regioselectivity of the studied reactions is determined by the structural features and reactivity of the carbocations formed in a condensed medium during the course of the reaction. According to the theoretical data obtained experimentally, during the condensation of glycerol and 1,2,4-butanetriol with formaldehyde in the most stable form of the six-membered cyclic carbocation, intramolecular hydrogen bonding and anomeric stabilization due to the axially oriented hydroxyl group take place. As a result, cation 1b–1 is 1.2–1.6 kJ/mol more stable than its five-membered isomers ( 1a–1 and 1b–2 ). It leads to the predominant formation of 1,3-dioxane ( 3b ). However, upon condensation of butanetriol-1,2,3 with formaldehyde, the intermediate cation 4a–1 turns out to be significantly more stable than the other isomers due to the strong intramolecular hydrogen bond in the six-membered ring with the participation of the hydroxyl group of the substituent and the hydroxyl group of the cationic center, leading to the predominant formation of the dioxolane 6a .     

Unimolecular reactions of ionized methyl acetate and its hydrogen-rearranged isomers

The proposed formation of [CH₃C(OH)OCH₂]⁺˙ (b) as the intermediate in the isomerization [CH₂?C(OH)OCH₃]⁺˙ (c)?b?[CH₃COOCH₃]⁺˙ (c has been confirmed by preparation of b from CH₃COOCH₂OCH₃. For the three isomers a–c the dominant metastable ion (MI) dissociation, CH₃O˙ loss, involves identical kinetic energy release values. The kinetic barriers for a?b and b?c must be nearly as high as that for CH₃O˙ loss from c, as shown by the insensitivity of the mass spectra from collisionally activated dissociation (CAD) of a–c to ionizing electron energy. The H/D scrambling of metastable [CH₂?C(OD)OCH₃]⁺˙ and c–D₃ ions confirm this, indicating that the barrier for a?b is slightly below that for b?c. Minor low-energy dissociations include losses of CH₄ and CH₃OH from a and losses of ˙CHO and CH₂O from b. Comparison of MI and CAD spectra of a–c with those from [CH₃(OH)CH₂O]⁺˙ (d) and [CH₃COCH₂OH]⁺˙ (e) give no evidence for skeletal rearrangement of a–c to d or e.     

Ion-neutral complexes and the proton-bound dimer of acetone

High- and low-energy collision-induced dissociation, and multi-photon infrared dissociation spectra of the proton-bound dimer of acetone all show the formation of protonated-acetone and an acetone molecule as the only dissociation products. In the present paper evidence is presented that the proton-bound dimer of acetone can exist as three isomeric ion-neutral complexes, two of which may interconvert. The dissociation channels and energetics of these three complexes are modelled using the MINDO/3 quantum chemical method.     

Experimental and theoretical results on palladium-catalyzed hydrogenation reactions

A correlation between the stereoselectivity of cis-and trans-1, 2-dimethylcyclohexane in o-xylene hydrogenation and theoretical charge density of Pd centers as a function of particle size has been established.

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— -1, 2- o- Pd .

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On sabbatical leave from Instituto de Fisica UNAM.     

溶剂效应的TLSER描述及其在几类异构化反应中的应用

建立了适合于描述党溶剂效应的理论线性溶剂化能相关(TLSER)模型。并用该模型对四类异构化反应在不同溶剂下的反应自由能或活化自由能与溶剂的分子结构之间的关系进行了研究,确证了模型的合理性。     

Experimental and theoretical study of the gas-phase interaction between ionized nitrile sulfides and pyridine

The gas-phase reactivity of ionized nitrile sulfides, R-C≡N⁺-S^·, towards neutral pyridine was studied both experimentally (six sector hybrid mass spectrometer) and theoretically (density functional theory and Møller-Plesset ab initio calculations). An ionized sulfur atom transfer and a cycloaddition process respectively yielding ionized pyridine N-thioxide and a thiazolopyridinium cation were observed. Whereas the very efficient S^·+ transfer reaction probably involves the intermediacy of several ion-molecule complexes, the thiazolopyridinium ion formation is likely to be initiated by an electrophilic attack of the R-C≡N⁺-S^· ion on the nitrogen atom of pyridine; the resulting intermediate then undergo an intramolecular substitution of an α-hydrogen atom by the sulfur atom.     

Experimental and theoretical studies on the isomerization of allyl thiocyanate to allyl isothiocyanate

The mechanism of isomerization of allyl thiocyanate to allyl isothiocyanate has been investigated both experimentally and theoretically. The kinetic study indicates that the reaction is unimolecular and is not ionic. The entropy of activation suggests strongly that the mechanism involves a cyclic transition state. The rate of reaction was retarded to a small extent in polar solvents relative to that in nonpolar solvents. Ab initio MO calculations indicate, in agreement with the experimental results, that the reaction proceeds through a cyclic transition state, one in which the SCN moiety is almost linear. Thus, this is a [3,3] sigmatropic rearrangement. The charge separation in the transition state was substantial. The retardation of the reaction in polar solvents was attributed to the difference in solvation in the original state and in the transition state. © 1997 John Wiley & Sons, Inc.     

Photochemical syn-anti isomerization reactions in N2-hydroxyisocytosines--an experimental matrix isolation and theoretical study

N2-hydroxyisocytosine and 1-methyl-N2-hydroxyisocytosine were studied using a matrix isolation technique combined with infrared absorption spectroscopy. For N2-hydroxyisocytosine isolated in an Ar matrix (at 10 K), two imino-oxo isomers, one with the hydroxyimino =N-OH group directed toward the N1-H group (the form called further anti) and the second with the =N-OH group directed toward N3-H (syn), were observed in the ratio 1.4:1. The syn isomer is converted totally to the anti form after UV (lambda > 295 nm) irradiation of the matrix. A small amount of the N(3)H-hydroxy-amino tautomer of N2-hydroxyisocytosine was also detected in the matrix. This form did not react photochemically. For 1-methyl-N2-hydroxyisocytosine, only the syn form of the imino-oxo tautomer was observed after deposition of the matrix. UV (lambda > 295 nm) irradiation induced a photoreaction converting this isomer into the anti form. After 15% of the starting material had been converted into the product, a photostationary state was achieved, and no further progress of the reaction was observed. Subsequent UV irradiation (lambda > 335 nm) caused a back reaction, leading to a disappearance of the anti form and to the recovery of the initial syn isomer. All isomers were identified by comparing their experimental IR spectra with the spectra theoretically calculated at the DFT(B3LYP)/6-31G(d,p) level, where DFT is the density functional theory. Good agreement between the observed and predicted patterns of the spectral lines allowed for reliable identification. The experimental IR spectra were interpreted and discussed. The relative energies of the 12 isomers of N2-hydroxyisocytosine were calculated at the MP2/6-31G(d,p) and MP4//MP2/6-31G(d,p) levels. For six isomers of 1-methyl-N2-hydroxyisocytosine, the calculations were carried out at the MP2/6-31G(d,p) level. The anti form of the imino-oxo tautomer of N-hydroxyisocytosine and the syn form of the imino-oxo tautomer of 1-methyl-N2-hydroxyisocytosine were predicted to be the most stable.     

Experimental and theoretical investigations of cyanide detection using a photochromic naphthopyran

Photochromic naphthopyran derivatives were synthesised for anion recognition applications. The crystal structure, experimental and theoretical investigation of photochromic and anion sensing properties of a simple naphthopyran derivative were investigated. The naphthopyran derivative displayed good fatigue resistance and selective sensing response towards cyanide ions. The mechanism of complex formation was suggested based on NMR studies. Theoretical calculations were performed to understand the experimental results. An excellent correlation between the theoretical and experimental data was observed.     

Experimental and theoretical investigations of lithium isotopes separation using 10-hydroxybenzoquinoline

Journal of Radioanalytical and Nuclear Chemistry - Effective separation of lithium isotopes (6Li and 7Li) is a significant challenge in developing clean nuclear energy. In this work, 7Li was...     

Gas-phase reactions of pd with acetone: A theoretical investigation using density functional theory

The gas-phase reaction of palladium atom with acetone is investigated using density functional theory. Geometries and energies of the reactants, intermediates, and products involved are calculated. Both ground and excited state potential energy surfaces are investigated in detail. The present results show that the title reaction start with the formation of an ??²-CH₃COCH₃-metal complex, followed by C-O, C-H, and C-C activation. These reactions can lead to four different products (PdO + C₃H₆, PdCH₂COCH₃ + H, PdCH₂ + CH₃CHO, and PdCOCH₂ + CH₄). The present results may be helpful in understanding the mechanism of the title reaction and further experimental investigation of the reaction.     

A theoretical study of the photochemical isomerization reactions of furans from the triplet state

The mechanisms of photoisomerization reactions were investigated theoretically using a model system of 2-methylfuran with the CASSCF (10-electron/8-orbital active space) and MP2-CAS methods and the 6-311(d,p) basis set. After 2-methylfuran molecules are produced in the T(1) state by photoexcitation at 254 nm, intersystem crossing to the S(0) surface is the most probable pathway for deactivation. Relaxing to the S(0) state, the 2-methylfuran molecules can dissociate into 3-methylcyclopropene and carbon monoxide products. Otherwise, they may revert to singlet 2-methylfuran or undergo photorearrangement to produce 3-methylfuran. These stepwise mechanisms are consistent with the available experimental observations.