Pulsed helium introduction into a quadrupole ion trap for reduced collisional quenching during infrared multiphoton dissociation of electrosprayed ions

Previous infrared multiphoton dissociation (IRMPD) experiments utilizing a quadrupole ion trap mass spectrometer yielded limited photodissociation efficiencies. Helium buffer gas continuously infused into the analyzer region at pressures of typically 1 x 10(-3) Torr to improve ion trap performance can collisionally quench photoexcited ions during the IRMPD process. Photodissociation experiments have indicated that uncorrected pressures below 2 x 10(-5) Torr are necessary to avoid collisional deactivation of photoexcited ions. This paper describes IRMPD in the quadrupole ion trap at reduced pressures utilizing a dual-pulsed introduction of helium buffer gas incorporated into the ion trap scan function. The pulsed introduction of helium buffer gas before ion injection allows the efficient trapping of ions injected from an electrospray source and the removal of helium before laser irradiation. A second pulse of helium directly before ion detection improves the intensity of the ion signal. The use of this dual-pulsed inlet of helium for improved IRMPD is demonstrated with the carbohydrate antibiotics neomycin and erythromycin. Copyright 2000 John Wiley & Sons, Ltd.     

MS/MS of ions in a low pressure linear ion trap using a pulsed gas

A pulsed valve was used to increase the pressure within the trapping region of a low-pressure linear ion trap by situating the pulsed valve close to the ion trapping region. The pressure was estimated to increase from a background pressure of 3.5e–5 Torr of nitrogen to 0.49 mTorr at the center of the trap. The increased pressure allowed excitation periods to be reduced from 100 to 25 ms without suffering losses in MS/MS efficiency during dipolar excitation. The reduction in excitation period translates into an increase in the overall duty cycle of the scan.     

Dual buffer gases for ion manipulation in a miniature ion trap mass spectrometer with a discontinuous atmospheric pressure interface

The discontinuous atmospheric pressure interface (DAPI) has been developed to allow a direct transfer of ions from atmosphere into an ion trap mass spectrometer with minimum pumping capability. Air is introduced into the trap with ions and used as a buffer gas for the ion trap operation. In this study, a method of introducing helium as a second buffer gas was developed for a miniature mass spectrometer using a dual DAPI configuration. The buffer gas effects on the performance of a linear ion trap (LIT) with hyperbolic electrodes were characterized for ion isolation, fragmentation and a mass-selective instability scan. Significant improvement was obtained with helium for resolutions of mass analysis and ion isolation, while moderate advantage was gained with air for collision-induced dissociation. The buffer gas can be switched between air and helium for different steps within a single scan, which allows further optimization of the instrument performance for tandem mass spectrometry.     

Coupling of ion-molecule reactions with liquid chromatography on a quadrupole ion trap mass spectrometer

We report for the first time a coupling of gas-phase ion-molecule reactions with chromatographic separations on a quadrupole ion trap mass spectrometer. The interface was accomplished by using a pulsed valve for the introduction of a volatile neutral into the ion trap. The pulsed valve controller is synchronized with the mass spectrometer software. The setup requires some minor modifications to the vacuum system of the commercial quadrupole ion trap but most of the modifications are external to the mass spectrometer. Two applications of this interface are described: differentiation between two phosphoglucose positional isomers and detection of a phosphopeptide in a peptide mixture. Both applications are using the reactivity of trimethoxyborate towards a phosphate moiety in the negative ion mode. The detection of phosphopeptides hinges on our findings that non-phosphorylated peptide anions do not react with trimethoxyborate. This LC/MS detection can be easily visualized in terms of selected reaction monitoring.     

Effects of heavy gases on the tandem mass spectra of peptide ions in the quadrupole ion trap

Heavy gases (xenon, argon, krypton, methane) have been used to improve the performance of the quadrupole ion trap when performing collision-induced dissociation on peptides. MS/MS spectra reveal that increased amounts of internal energy can be deposited into peptide ions and more structural information can be obtained. Specifically, the pulsed introduction of the heavy gases (as reported previously by Doroshenko, V. M.; Cotter, R. J.Anal. Chem. 1996, 68, 463) provides greater energy deposition without the deleterious effects that static pressures of heavy gas have on spectra. Internal energy deposition as indicated by a qualitative evaluation of MS/MS spectra shows pulsed introduction of heavy gases enables ions to obtain more internal energy than possible by using static pressures of the same heavy gases. A linear correlation is observed between the percentage of heavy gas added and the ratio of product ions used to reflect internal energy deposition. Results here also show that upon pulsed introduction of heavy gases, empirical optimization of a single frequency resonant excitation signal is no longer needed to obtain good MS/MS spectrometry efficiency. The presence of many low mass-to-charge ratio ions and the absence of side chain cleavages in the MS/MS spectra of peptides suggests that the propensity for consecutive fragmentations is increased with the pulsed introduction of heavy gases. In addition, by varying the delay time between introduction of the gas and application of the resonant excitation signal, the amount of fragmentation observed in MS/MS spectra can be changed.     

Internal pulsed valve sample introduction on a quadrupole ion trap mass spectrometer

A pulsed valve positioned just outside the ion trap electrodes (within the vacuum chamber) has been characterized. The observed gas pulse widths and the maximum ion intensities were found to decrease as the distance between the pulsed valve and the ion trap electrodes increased. An explanation is presented within. The pulsed valve was found to impart temporal separation in ion-molecule reactions by permitting the removal of interfering neutrals. Other factors that affect the degree of temporal separation also are presented.     

A pulsed-leak valve for use with ion trapping mass spectrometers

A pulsed-leak valve that allows the introduction of a prolonged, flat, and controllable pulse of gas is described. Test results from the valve that utilized a Fourier transform ion cyclotron resonance mass spectrometer with Ar and C₂H₆ as the sample gases indicate that the valve functions as expected and yields basically rectangular pressure profiles in the cell region. The rise and fall times are similar to those of just the stand-alone pulsed valve and are believed to be determined mainly by the design of the vacuum system, rather than the design of the pulsed-leak valve. Kinetic data for the reaction of Nb⁺ with C₂H₆, acquired with the use of the pulsed-leak valve to introduce the C₂H₆ gas, demonstrates the practical application of this valve for kinetic and other analogous studies. Use of the pulsed-leak valve greatly reduces the loss of the reactant ion signal during the cooling period.     

The Effects of Air and Helium on the Performance of the Ion Trap Detector When Used for Real-Time Monitoring of Some Atmospheric Pollutants

The feasibility of using an ion trap detector for real-time monitoring of volatile organic compounds in atmospheric samples is demonstrated. Detection limits in the low part-per-million to low part-per-billion ranges are achieved with an operating dynamic range of at least 5 orders of magnitude. Sample introduction through semipermeable membranes and molecular leak valves was evaluated. The membrane introduction method provided detection limit enhancements of 10–300 times over the molecular leak method. The effects of partial pressure from air and helium buffer gas were studied, and it was determined that, for optimum amounts of air, the helium buffer gas had no apparent effect on sensitivity or resolution. Air acts as the buffer gas to enhance ion signals by collisionally damping ion motion. The enhancement of molecular ion abundance at high partial pressures of air is postulated to be due to charge exchange and possibly collisional stabilization reactions.     

Competition between resonance ejection and ion dissociation during resonant excitation in a quadrupole ion trap

The competition between ion dissociation and ion ejection during resonant excitation in a quadrupole ion trap is investigated. Ions of similar mass but with a range of critical energies for the onset of dissociation have been examined. The effects of the amplitude and duration of the resonant excitation, the well depth in which the ions are trapped, and the pressure and nature of the collision gas are explored. Once the onset of ion ejection is reached, the rate of ion ejection increases with increased amplitude of the resonant excitation signal. The rate of ejection decreases or stays constant as a function of the duration of the resonant excitation, depending upon the ion species being excited. Increasing the trapping well depth increases the relative amount of dissociation versus ejection as does increasing the pressure of the bath gas. Adding heavier bath gases lowers the onset of ion dissociation and raises the onset of ion ejection.     

A secondary ion microprobe ion trap mass spectrometer

An ion trap mass analyzer has been attached to an organic secondary ion microprobe. A pressure differential >100 can be maintained between the ion trap and microprobe. The well-focused secondary ion beam can transit a small (2 mm) diameter tube, but gas flow from ion trap to microprobe is impeded. This pressure differential allows the microprobe to retain imaging capability. Ion trap and microprobe data systems are integrated by taking advantage of the highly reproducible periodicity of the ion trap operating in resonant ejection mode and asynchronous signal and data acquisition afforded by commercially available interface cards. Secondary ion mass spectra and images obtained indicate an approximately 10-fold improvement in sensitivity, although preliminary evidence indicates low (<1%) trapping efficiency. Image data acquisition using the ion trap for mass analysis requires at least 10 times as much time compared to using a quadrupole mass filter because the mass-selected instability mode is used for mass analysis, i.e., mass resolution in the ion trap is not continuous as it is in the quadrupole.     

Improving the analytical performance of ion mobility spectrometer using a non-radioactive electron source

For the ionization of gas mixtures, several ionization sources can be coupled to an ion mobility spectrometer. Radioactive sources, e.g. beta radiators like ⁶³Ni and ³H, are the most commonly used ionization sources. However, due to legal restrictions radioactive ionization sources are not applicable in certain applications. Non-radioactive alternatives are corona discharge ionization sources or photoionization sources. However, using an electron gun allows regulation of ion production rate, ionization time and recombination time by simply changing the operating parameters, which can be utilized to enhance the analytical performance of ion mobility spectrometers. In this work, the impact of an ionization source parameter variation on the ion mobility spectrum is demonstrated. Increasing the ion production rate, the amount of the generated ions increases leading to higher signal intensity while the noise remains constant. Thus, the signal to noise ratio can be increased, leading to better limits of detection. In a next step, the ion production rate is kept constant while the influence of ionization time on the ion mobility spectrum is investigated. It is shown, that varying the ionization time allows the determination of the reaction rate constants as additional information to the ion mobility. Furthermore, we show the prevention of discrimination processes by using short ionization times combined with an increased ion production rate. Thus, the limit of detection for benzene in presence of toluene is improved. Additionally, it is shown that using ion-ion recombination leads to the detection of the ion species with the highest proton affinity at higher recombination times while the low proton affine ions already recombined. Thus, the measurement of the ion mobility spectra at a defined recombination time allows a suppression of disturbing low proton affine substances.     

Fluorescence and photodissociation of rhodamine 575 cations in a quadrupole ion trap

The fluorescence and photodissociation of rhodamine 575 cations confined to a quadrupole ion trap are observed during laser irradiation at 488 nm. The kinetics of photodissociation is measured by time-dependent mass spectra and time-dependent fluorescence. The rhodamine ion signal and fluorescence decay are studied as functions of buffer gas pressure, laser fluence, and irradiation time. The decay rates of the ions in the mass spectra agree with decay rates of the fluorescence. Some of the fragment ions also fluoresce and further dissociate. The photodissociation rate is found to depend on the incident laser fluence and buffer gas pressure. The implications of rapid absorption/fluorescence cycling for photodissociation of dye-labeled biomolecular ions under continuous irradiation are discussed.     

A quadrupole ion trap and Fourier transform ion cyclotron resonance concerted study of the kinetics of an ion/molecule association reaction: a chemometric approach

The effects of different experimental parameters on rate constant measurements performed by mass spectrometry were investigated with a two-level fractional factorial design. This chemometric technique allows a study of the effects of selected factors and of their interactions on the response of an experiment by performing a limited number of analyses. The selected factors were: sample pressure, energy of the ionising electrons, reaction time and ionisation time. In this work, two mass spectrometric techniques were compared: Fourier transform ion cyclotron resonance (FT-ICR) and quadrupole ion trap (QIT) mass spectrometries. Experimental results were obtained from a study of a reaction system consisting of the condensation between triethylphosphite and its fragment ion (CH(3)CH(2)O)(2)P(+). Apparent bimolecular rate constants are clearly larger when determined by QIT than by FT-ICR, because of collisional stabilisation of the adduct ion by helium buffer gas introduced in the QIT spectrometer. However, the QIT rate constant extrapolated to zero helium pressure is almost identical to the FT-ICR value; this supports the conclusion regarding the buffer gas effect. Minor effects evidenced by the chemometric method were attributed to the sample pressure and to the reaction time.     

High sensitivity and broad dynamic range infrared multiphoton dissociation for a quadrupole ion trap

Dynamic control of bath gas pressure in a quadrupole ion trap (QIT) achieved high sensitivity and broad dynamic range infrared multiphoton dissociation (IRMPD). Conventional IRMPD is not sensitive because the bath gas pressure in the QIT needs to be kept at less than 1 mTorr for an effective dissociation, whereas the pressure should be about 20 mTorr for maximum trapping efficiency during ion accumulation. By switching the bath gas pressure between about 20 mTorr during the ion accumulation period and less than 0.6 mTorr during the IRMPD period, it was possible to achieve both maximum trapping efficiency and effective IRMPD. An optimized method for gas introduction enables the trapping efficiency to remain constant during the accumulation period, which permits a broad dynamic range measurement.     

The pulsed glow discharge as an elemental ion source

A pulsed glow discharge, rather than a conventional constant dc voltage discharge, is used as an ion source for a quadrupole mass spectrometer. Both sputter yield and ion signal are enhanced by using the pulsed system because of an increase in the voltage necessary to maintain a constant average current at the cathode over the pulse period. Irregularities are seen in the pulse spectrum that appear as rapid surges in the ion signal for both sputtered and contaminant gas species. These peaks appear at the beginning of the pulse for gaseous species but are limited to the postpulse period for sputtered species. Differences in the signal forms allow for the discrimination against selected types of ion signals by using narrow data collection gates placed over different portions of the pulse period.     

Multi-parameter investigation of tandem mass spectrometry in a linear ion trap using response surface modelling

The feasibility of experimental design in combination with subsequent response surface modelling was illustrated for the prediction and interpretation of tandem mass spectrometric (MS/MS) fragmentation data using a linear quadrupole ion trap under various experimental conditions. The instrumental parameters included were (i) the pressure of the collision gas, (ii) the collision energy, (iii) the fill time of the linear ion trap and (iv) the scan rate. The spectral intensity and width of five fragment ions of the doubly charged neuro-active peptide bombesin were used for evaluation, and all experiments were performed so as to resemble the results obtained from a liquid chromatographic peak. The reported results show how fairly simple mathematical tools can be utilized successfully to describe fundamental mechanisms associated with multiple collisional activation and collision-induced dissociation processes without an extensively controlled experimental environment. Most beneficial, using the suggested approach, is the ability to study interaction (synergistic) effects between various parameters. As was realized from the results, many interaction effects are indeed significant. For example, the effect on the signal intensity of different collision gas pressure settings is strongly dependent on the settings of the other parameters. The described approach can easily be adopted for optimization purposes of any MS/MS experiment.     

Plasma source ion trap mass spectrometry: Enhanced abundance sensitivity by resonant ejection of atomic ions

An experimental study of resonant ion excitation in an rf quadrupole ion trap is reported. Atomic ions are generated in an inductively coupled plasma and injected into the ion trap where, after collisional cooling, they are irradiated by a low-voltage, dipole coupled waveform. Single frequency, narrowband, and broadband excitation pulses have been used. Absorption lineshapes (plots of observed ion signal versus excitation frequency) are shown for variations in buffer gas pressure and the amplitude and duration of the single frequency pulses. The absorption lineshapes are usually asymmetric and tail toward lower frequencies. At sufficiently low buffer gas pressure or potential well depth, the lineshapes broaden and become more asymmetric to the point that absorption by ions with adjacent mass-to-charge ratios overlaps. This overlapping absorption reduces the selectivity with which a single mass-to-charge ratio ion can be excited and ejected relative to nearby mass-to-charge ratio ions. The rate of ion ejection is different on the low versus high frequency edges of the absorption lines. This difference in ejection rates provides an important key to understanding the shape of the absorption lines. All of these observations are explained in terms of the known kinematic behavior of ions in real traps, that is, traps with substantial higher order symmetry components in the trapping field (“nonlinear” fields). The importance of the nonlinearity of the trapping field in understanding the observed lineshapes and their time dependencies is discussed. We also report resonant ejection results obtained using multiple frequency (narrow or broad bandwidth) excitation. Multiple frequency excitation allows ions with different mass-to-charge ratio values to be ejected from the trap using one excitation waveform. The finite ion storage capacity of the ion trap is thereby reserved for the ion(s) of interest. We show that ejection of ⁸⁹Y ions can be ～ 10⁵ times more efficient than ejection of ions at either m/z 88 or 90.     

Ultraviolet photodissociation of protonated pharmaceuticals in a pressurized linear quadrupole ion trap

Ultraviolet photodissociation (UVPD) was evaluated as a technique for generating ion fragmentation information that is alternative and/or complementary to the information obtained by collision‐induced dissociation (CID). Ions trapped in a pressurized linear ion trap were dissociated using a 355 nm or a 266 nm pulsed laser. Comparisons of UVPD and CID spectra using a set of aromatic chromophore‐containing compounds (desmethyl bosentan, haloperidol, nelfinavir) demonstrated distinct characteristic fragmentation patterns resulting from photodissociation. The wavelength of light and the pressure of the buffer gas in the UVPD cell are important parameters that control fragmentation pathways. The wavelength effect is related to the absorption cross section, location of the chromophore and the energy carried by one photon. Thus, UV irradiation wavelength affects fragmentation pathways as well as the fragmentation rate. The pressure effect can be explained by collisional quenching of ‘slow’ fragmentation pathways. We observed that higher pressure of the buffer gas during UVPD experiments highlights unique fragment ions by suppressing slow fragmentation pathways responsible for CID‐like fragmentation patterns. Copyright © 2010 John Wiley & Sons, Ltd.     

First mass spectrometric detection of boldenone in horse mane samples

Summary In order to investigate the detection of boldenone in horse mane samples, a boldenone study was conducted on two horses. The analytical procedure consisted in a hydrolysis using the Sorensen buffer, a liquid-liquid extraction using diethyl ether and a PFPA derivatization. The instrumental method was a gas chromatography sequential mass spectrometry performed on an ion trap instrument in full scan mode. The limit of detection was estimated to 1 pg mg⁻¹. The detection of boldenone in the mane was made possible for up to 12 months after administration.     

External accumulation of ions for enhanced electrospray ionization fourier transform ion cyclotron resonance mass spectrometry

Electrospray ionization (ESI) in combination with Fourier transform ion cyclotron resonance (FTICR) mass spectrometry provides for mass analysis of biological molecules with unrivaled mass accuracy, resolving power and sensitivity. However, ESI FTICR MS performance with on-line separation techniques such as liquid chromatography (LC) and capillary electrophoresis has to date been limited primarily by pulsed gas assisted accumulation and the incompatibility of the associated pump-down time with the frequent ion beam sampling requirement of on-line chromatographic separation. Here we describe numerous analytical advantages that accrue by trapping ions at high pressure in the first rf-only octupole of a dual octupole ion injection system before ion transfer to the ion trap in the center of the magnet for high performance mass analysis at low pressure. The new configuration improves the duty cycle for analysis of continuously generated ions, and is thus ideally suited for on-line chromatographic applications. LC/ESI FTICR MS is demonstrated on a mixture of 500 fmol of each of three peptides. Additional improvements include a fivefold increase in signal-to-noise ratio and resolving power compared to prior methods on our instrument.