基于静电学讨论蛋白质分子的聚沉现象

日常生活中,将食盐加入到胶体蛋白质溶液中会出现聚沉现象.本文基于球形胶粒模型,运用静电学的泊松方程以及玻尔兹曼分布定律讨论蛋白分子的聚沉现象.通过挖掘生活现象中的物理思想,不仅加深学生对物理学定律的理解,培养解决实际问题的能力,而且提升教学的效果.     

Microcanonical analyses of peptide aggregation processes

We propose the use of microcanonical analyses for numerical studies of peptide aggregation transitions. Performing multicanonical Monte Carlo simulations of a simple hydrophobic-polar continuum model for interacting heteropolymers of finite length, we find that the microcanonical entropy behaves convex in the transition region, leading to a negative microcanonical specific heat. As this effect is also seen in first-order-like transitions of other finite systems, our results provide clear evidence for recent hints that the characterization of phase separation in first-order-like transitions of finite systems profits from this microcanonical view.     

Squalestatin alters the intracellular trafficking of a neurotoxic prion peptide

Background  

Neurotoxic peptides derived from the protease-resistant core of the prion protein are used to model the pathogenesis of prion diseases. The current study characterised the ingestion, internalization and intracellular trafficking of a neurotoxic peptide containing amino acids 105–132 of the murine prion protein (MoPrP105-132) in neuroblastoma cells and primary cortical neurons.     

Screened electrostatics of charged particles on a water droplet

We study the electrostatic properties of charged particles trapped at an interface in a water-in-oil microemulsion. The electrostatic potential and the counterion distribution in the water droplet are given in terms of the ratio of the Debye screening length κ^-1 and the droplet radius R. In the limit R→∞ we recover the well-known results for a flat interface. Finite-size corrections are obtained in terms of the small parameter 1/κR. Part of the counterions spread along the interface and form a charged layer of one Debye length thickness. In particular, there is a uniform surface charge contribution. We derive explicit expressions for the electric field, the mobile charge density, and the charge-induced pressure on the interface.     

Effect of secondary radiation force on aggregation between encapsulated microbubbles

Secondary radiation force can be an attractive force causing aggregates of encapsulated microbubbles in ultrasonic molecular imaging. The influence of the secondary radiation force on aggregation between two coated bubbles is investigated in this study. Numerical calculations are performed based on four simultaneous differential equations of radial and translational motions. Results show that the secondary force can change from attraction to repulsion during approach, and stable microbubble pairs can be formed in the vicinity of resonant regions; the possibility of microbubble aggregations can be reduced by using low exciting amplitude, ultrasonic frequencies deviating from the resonant frequencies or microbubbles with small compressibility.     

纳米颗粒聚集形态对纳米流体导热系数的影响

纳米流体中悬浮的纳米颗粒可以增强其导热性能已经得到广泛认可,然而纳米流体颗粒增强传热的机理目前尚不清楚.研究表明,纳米颗粒的聚集是纳米流体导热系数增大的重要机制,而且纳米颗粒聚集的形态对纳米流体的导热系数有重要影响,但是目前的导热系数模型大多是建立在Maxwell有效介质理论的"静态"和"均匀分散"假设基础上.本文用平衡分子动力学模拟Cu-Ar纳米流体,采用Green-Kubo公式计算导热系数,采用Schmidt-Ott关系式计算不同聚集形态下的分形维数.对比导热系数与分形维数可以发现:在相同体积分数下,较低的分形维数会有更高的导热系数,分析了分形维数与导热系数的定量关系.此外,通过径向分布函数可以看出纳米颗粒紧密聚集与松散聚集的差异,基液分子在纳米颗粒附近的纳米薄层中处于动态平衡状态.研究结果有助于理解纳米颗粒聚集形态对导热系数的影响机理.     

Effect of cylindrical filler aggregation on the electrical conductivity of composites

This work reports on the effect of carbon nanotube aggregation on the electrical conductivity and other network properties of polymer/carbon nanotube composites by modeling the carbon nanotubes as hard-core cylinders. It is shown that the conductivity decreases for increasing filler aggregation, and that this effect is more significant for higher cylinder volume fractions. It is also demonstrated, for volume fractions at which the giant component is present, that increasing the fraction of cylinders within clusters leads to a break of the giant component and the formation of a set of finite clusters. The decrease of the giant component with the increase of the fraction of cylinders within the cluster can be related to a decrease of the spanning probability due to a decrease of the number of cylinders between the clusters. Finally, it is demonstrated that the effect of aggregation can be understood by employing the network theory.     

Effect of electrostatics techniques on the estimation of thermal conductivity via equilibrium molecular dynamics simulation: application to methane hydrate

Equilibrium molecular dynamics (MD) simulations for three system sizes of fully occupied methane hydrate have been performed at around 265 K to estimate the thermal conductivity using the Ewald, Lekner, reaction field, shifted-force and undamped Fennell–Gezelter methods. The TIP4P water model was used in conjunction with a fully atomistic methane potential with which it had been parameterized from quantum simulation. The thermal conductivity was evaluated by integration of the heat flux autocorrelation function (ACF) derived from the Green–Kubo formalism; this approach vas validated by estimation of the average phonon mean free path. The thermal conductivities predicted by non-periodic techniques were in reasonable agreement with the experimental results of 0.62 and 0.68 W/m K, although it was found that the estimates by the non-periodic techniques were up to 25% larger than those of Lekner and Ewald estimates, particularly for larger systems. The results for the Lekner method exhibited the least variation with respect to system size. A decomposition of the heat flux vector into its respective contributions revealed the importance of electrostatic interactions, and how different electrostatic treatments affect the contribution to the thermal conductivity.     

Effect of solvent-controlled aggregation on the intrinsic emission properties of PAMAM dendrimers

Solvent-induced aggregation and its effect on the intrinsic emission properties of amine, hydroxy and carboxylate terminated, poly(amidoamine) (PAMAM) dendrimers have been investigated in glycerol, ethylene glycol, methanol, ethylene diamine and water. Altering the solvent medium induces remarkable changes in the intrinsic emission properties of the PAMAM dendrimers at identical concentration. Upon excitation at 370 nm, amine terminated PAMAM dendrimer exhibits an intense emission at 470 nm in glycerol, ethylene glycol as well as glycerol-water mixtures. Conversely, weak luminescence is observed for hydroxy and carboxylate terminated PAMAM dendrimers in the same solvent systems. When the solvent is changed to ethylene diamine, hydroxy terminated PAMAM exhibits intense blue emission at 425 nm. While the emission intensity is varied when the solvent milieu is changed, excited state lifetime values of PAMAM dendrimers remain independent of the solvent used. UV-visible absorption and dynamic light scattering (DLS) experiments confirm the formation of solvent-controlled dendrimer aggregates in the systems. Comparison of the fluorescence and DLS data reveals that the size distribution of the dendrimer aggregates in each solvent system is distinct, which control the intrinsic emission intensity from PAMAM dendrimers. The experimental results suggest that intrinsic emission intensity from PAMAM dendrimers can be regulated by proper selection of solvents at neutral conditions and room temperature.     

超声对蛋白质盐析作用的研究

在蛋白质（牛血清白蛋白）-水胶体溶液中加入无机盐，利用蛋白质盐析的原理粗分离蛋白质是常用的生物分离技术。本文试图利用超声强化蛋白质盐析分离过程。讨论了声场参数，即频率、声强、超声辐射时间对该过程的影响。实验表明超声处理牛血清白蛋白时，20kHz超声辐照比无超声处理可缩短了近4．5小时的静置时间，20kHz超声处理可得到约90％的最高蛋白质收率；不同超声频率下有不同的最佳声压值，频率较低时的盐析效果较好；超声辐照并非时间越长越好，超声辐照2min时，牛血清白蛋白的收率最大。由此证明超声技术可加速盐析后的蛋白质沉降速度。     

Effect of ultrasound on protein functionality

The review focus on the effect of ultrasound on protein functionality. The presence of transient ultrasonic mechanical waves induce various sonochemical and sonomechanical effects on a protein. Sonochemical effects include the breakage of chains and/or the modification of side groups of aminoacids. Sonomechanical modifications by enhanced molecular agitation, might lead to the transient or permanent modification of the 3D structure of the folded protein. Since the biological function of proteins depends on the maintenance of its 3D folded structure, both sonochemical and sonomechanical effects might affect its properties. A protein might maintain its 3D structure and functionality after minor sonochemical effects, however, the enhanced mass transfer by sonomechanical effects might expose internal hydrophobic residues of the protein, making protein unfolding to an irreversible denatured state. Ultrasound enhanced mass transport effects are unique pathways to change the 3D folded structure of proteins which lead to a new functionality of proteins as support shield materials during the formation microspheres. Enzymes are proteins and their reactions should be conducted in a reactor set-up where enzymes are protected from sonic waves to maximize their catalytic efficiency. In this review, focused examples on protein dispersions/emulsions and enzyme catalysis are given.     

Effect of ultrasound irradiation on asphaltene aggregation and implications to rheological behavior of bitumen

The present work investigates the contribution of asphaltene aggregation to bitumen viscosity subject to ultrasound irradiation. A West-African bitumen with a viscosity of 12043 cP at room temperature was sonicated at low (38 kHz) and mild frequency (200 kHz) under controlled gas environment including air, nitrogen (N₂) and carbon dioxide (CO₂). The rheology of the bitumen, asphaltene content analyses as well as spectral studies were conducted. Herein was found that sonicating the bitumen at 200 kHz under air-environment reduces the initial viscosity up to 2079 cP, which was twice larger than that obtained when a low frequency was used. In respect of the gas environment, it was shown that ultrasound irradiation under N₂ environment could lower the bitumen viscosity up to 3274 cP. A positive correlation between the asphaltene content and the viscosity reduction was established. The results from the spectral analyses including Fast Fourier Infrared and the observations from Scanned Electron Microscope were consistent with the rheological studies and led to the argument that the viscosity reduction results from either the scission of long chain molecules attached to the aromatic rings (when the applied frequency was altered under fixed gas environment) or the self-aggregation of asphaltene monomers (when gas environment was changed at fixed frequency).     

Effect of polymer architecture and ionic aggregation on the scattering peak in model ionomers

We perform molecular dynamics simulations of coarse-grained ionomer melts with two different architectures. Regularly spaced charged beads are placed either in the polymer backbone (ionenes) or pendant to it. The ionic aggregate structure is quantified as a function of the dielectric constant. The low wave vector ionomer scattering peak is present in all cases, but is significantly more intense for pendant ions, which form compact, discrete aggregates with liquidlike interaggregate order. This is in qualitative contrast to the ionenes, which form extended aggregates.     

Effect of surfactants on the aggregation of pyronin B and pyronin Y in aqueous solution

Molecular dynamics of pyronin B (PyB) and pyronin Y (PyY) in aqueous solution containing different surfactants were investigated by using absorption and fluorescence spectroscopy techniques. First, the interactions of PyB and PyY with the negatively charged surfactant sodium dodecyl sulphate (SDS) were investigated in the below and above critical micelle concentration (cmc). The H-aggregate formation of the dye compounds was observed for below the cmc of SDS surfactant. The absorbance of H-aggregate absorption band of PyB and PyY decreased according to the aggregate-monomer equilibrium by increasing SDS surfactant concentration towards the cmc. Therefore, equilibrium constants of the aggregate formation and oscillator strengths of monomer and aggregate of the dye compounds were calculated from spectral studies. Moreover, aggregate formation dynamics was discussed in terms of thermodynamic functions by using temperature studies. The interactions of PyB and PyY with the positively charged hexadecyltrimethylammonium bromide (CTAB) and neutral Triton X-100 (TX-100) were also studied and it was observed that there was no aggregate formation on the absorption and fluorescence spectra for below and above the cmc.     

Effect of aggregation on the absorption cross-section of fractal soot aggregates and its impact on LII modelling

This study concerns the effect of particle aggregation on laser heating rate of soot aggregates in laser-induced incandescence. Three aggregate absorption models were investigated: the Rayleigh-Debye-Gans approximation, the electrostatics approximation, and the numerically exact generalized multi-sphere Mie-solution method. Fractal aggregates containing 5-893 primary particles of 30 nm in diameter were generated numerically using a combined particle-cluster and cluster-cluster aggregation algorithm with specific fractal parameters typical of soot. The primary particle size parameters considered are 0.089, 0.177, and 0.354. The Rayleigh-Debye-Gans approximation neglects the effect of particle aggregation on absorption; so it underestimates the aggregate absorption cross-section area by approximately 10%, depending on the aggregate size and primary particle size parameter. The electrostatics approximation is somewhat better than the Rayleigh-Debye-Gans approximation, but cannot account for the effect of primary particle size parameter. The aggregate absorption submodel affects the calculated soot temperature in laser-induced incandescence mainly in the low laser fluence regime. At high laser fluences, the effect diminishes due to the enhanced importance of soot sublimation cooling and neglect of aggregation effect in the sublimation in the present numerical model of laser-induced incandescence.     

Crowding versus molecular seeding: NMR studies of protein aggregation in hen egg white

In living systems, proteins are surrounded by many other macromolecules of different nature, at high total concentrations. In the last few years, there has been an increasing effort to study biological macromolecules directly in natural crowded environments, such as in intact bacterial cells or by mimicking natural crowding by adding proteins, polysaccharides or even synthetic polymers. We have recently proposed hen egg white (HEW) as a suitable, natural medium to study macromolecules in crowding conditions. Here, we show that HEW can increase dramatically the aggregation kinetics of proteins with an in-built tendency to associate. By dissecting the mechanism we demonstrate that only part of this effect is due to crowding, while another factor playing an important role is the interaction with proteins from the milieu. High molecular weight glycoproteins present in HEW act as efficient molecular seeds for aggregation. Our results bear important consequences for in-cell NMR studies and suggest a role of glycosylated proteins in aggregation.     

Effect of small peptide(P-15) on HJMSCs adhesion to hydroxyap-atite

P-15, a synthetic peptide of 15-amino acids, has been tested in clinical trials to enhance cell adhesion and promote osseointe-gration. This feature of P-15 has also inspired the development of designing new bone substitute materials. Despite the increasing applications of P-15 in bone graft alternatives, few studies focus on the mechanism of cell adhesion promoted by P-15 and the mechanical property changes of the cells interacting with P-15. In this article, we used atomic force microscope(AFM) based single cell indentation force spectroscopy to study the impact of P-15 on the stiffness and the adhesion ability of human jaw bone mesenchymal stem cells(HJMSCs) to hydroxyapatite(HA). We found that the stiffness of HJMSCs increases as the concentration of P-15 grows in short culture intervals and that the adhesion forces between HJMSCs and HA particles in both the presence and absence of P-15 are all around 30 p N. Moreover, by calculating the binding energy of HJMSCs to HA particles mixed with and without P-15, we proved that P-15 could increase the adhesion energy by nearly four times. Scanning electron microscope(SEM) was also exploited to study the morphology of HJMSCs cultured in the presence and absence of P-15 on HA disc surface for a short term. Apparent morphological differences were observed between the cells cultured with and without P-15. These results explain the probable underlying adhesion mechanism of HJMSC promoted by P-15 and can serve as the bases for the design of bone graft substitute materials.     

Solid-state NMR structural studies of the fibril form of a mutant mouse prion peptide PrP89-143(P101L)

The peptide fragment 89-143 of the prion protein (carrying a P101L mutation) is biologically active in transgenic mice when in a fibrillar form. Injection of these fibrils into transgenic mice (expressing full length PrP with the P101L mutation) induces a neurodegenerative prion disease (Kaneko et al., J. Mol. Biol. 295 (2000) 997). Here we present solid-state NMR studies of PrP(89-143)(P101L) fibrils, probing the conformation of residues in the hydrophobic segment 112-124 with chemical shifts. The conformations of glycine residues were analyzed using doubly (13)C=O labeled peptides by two-dimensional (2D) double-quantum correlation, and double-quantum filtered dephasing distance measurements. MQ-NMR experiments were carried out to probe the relative alignment of the individual peptides fibrils. These NMR studies indicate that the 112-124 segment adopts an extended beta-sheet conformation, though not in a parallel, in register alignment. There is evidence for conformational variability at Gly 113. DQ correlation experiments provide useful information in regions with conformational heterogeneity.