N-methyl-phenacyloxycarbamidomethyl (Pocam) group: a novel thiol protecting group for solid-phase peptide synthesis and peptide condensation reactions

In the so-called thioester method for the condensation of peptide segments, protecting groups for amino and thiol groups are required for chemoselective ligation. In this study, we developed a novel thiol protecting group, N-methyl-phenacyloxycarbamidomethyl (Pocam). We used it for protection of cysteine side chains, and synthesized Pocam-containing peptides and peptide thioesters. These were condensed by the thioester method. After the condensation reaction, Pocam groups were cleaved by Zn/AcOH treatment. At the same time, the azido group, which was used for the protection of lysine side chains, was also converted to an amino group, demonstrating that this protecting group strategy simplified the deprotecting reaction after the peptide condensation reaction to only one step.     

Cross-metathesis of the vinyl group on tetrapyrrolic macrocycles: reactivity, selectivity, and mechanism

To find a general strategy for modifying the peripheral structure of vinylchlorin and porphyrin substrates, cross-metathesis on the vinyl group of these tetrapyrrolic macrocycles was investigated. The N-heterocyclic carbene-containing ruthenium complex 3 efficiently catalyzed the cross-metathesis (CM) of vinylchlorins and vinylporphyrins with a variety of olefins in high E-stereoselectivity. Different substituents on the olefin dramatically influenced the reaction. While the chlorins were more reactive than the porphyrins (as free bases), the corresponding zinc complexes showed higher activity. The reaction mechanism was investigated, and an empirical model for selective CM was applied to our studies to direct further reactions.     

Substituent effect on the molecular stability, group interaction, detonation performance, and thermolysis mechanism of nitroamino-substituted cyclopentanes and cyclohexanes

Density functional theory (DFT) method has been employed to study the effect of nitroamino group as a substituent in cyclopentane and cyclohexane, which usually construct the polycyclic or caged nitra-mines. Molecular structures were investigated at the B3LYP/6-31G** level, and isodesmic reactions were designed for calculating the group interactions. The results show that the group interactions ac-cord with the group additivity, increasing with the increasing number of nitroamino groups. The dis-tance between substituents influences the interactions. Detonation performances were evaluated by the Kamlet-Jacobs equations based on the predicted densities and heats of formation, while thermal stability and pyrolysis mechanism were studied by the computations of bond dissociation energy (BDE). It is found that the contributions of nitroamino groups to the detonation heat, detonation velocity, detonation pressure, and stability all deviate from the group additivity. Only 3a, 3b, and 9a-9c may be novel potential candidates of high energy density materials (HEDMs) according to the quantitative cri-teria of HEDM (ρ≈ 1.9 g/cm3, D ≈ 9.0 km/s, P ≈ 40.0 GPa). Stability decreases with the increasing number of N-NO2 groups, and homolysis of N-NO2 bond is the initial step in the thermolysis of the title com-pounds. Coupled with the demand of thermal stability (BDE > 20 kcal/mol), only 1,2,4-trinitrotriazacy-clohexane and 1,2,4,5-tetranitrotetraazacyclohexane are suggested as feasible energetic materials. These results may provide basic information for the molecular design of HEDMs.     

Pyruvoyl, a novel amino protecting group on the solid phase peptide synthesis and the peptide condensation reaction

In one of the peptide condensation methods termed thioester method, an amino protecting group is required in the lysine side chain. In this study, to investigate the efficiency of the pyruvoyl group as an amino protecting group, we synthesized N^α-fluorenylmethoxycarbonyl (Fmoc)-N^ε-pyruvoyl-lysine and introduced it into peptides and glycopeptides by the ordinary Fmoc-based solid phase peptide synthesis. The pyruvoyl peptide could be condensed with a peptide thioester by the thioester method, and this protecting group was easily removed by o-phenylenediamine treatment without significant side reactions.     

Photochemical synthesis, conformational analysis, and transformation of [60]fullerene-o-quinodimethane adducts bearing a hydroxy group

The photochemical reactions of [60]fullerene with various aromatic aldehydes or ketones 1a-n carrying an alkyl group at the ortho position were examined. Some of them afforded stable o-quinodimethane adducts 2 with a hydroxy group attached to the cyclohexene ring. The adducts 2 were found to adopt one or both of two conformers A and E, which possess pseudoaxial and pseudoequatorial hydroxy groups, respectively. The conformer ratios depended remarkably on the substituents attached to the aromatic nucleus and the cyclohexene ring. The dynamic behavior of 2 was also investigated by the VT-NMR technique.     

Nin-cyclohexyloxycarbonyl group as a new protecting group for tryptophan

Several new protecting groups were introduced at the Nⁱⁿ-position of tryptophan, and their reactivities were examined under the conditions used for peptide synthesis by Boc-strategy. Among them, the cyclohexyloxycarbonyl (Hoc) group was found to be the most suitable in terms of stability during elongation of the peptide chain and removability at the final HF reaction without resorting to the use of thiols.     

Ambident effect of a p-sulfinyl group for the introduction of two carbon substituents to phenol rings: a convergent synthesis of diverse benzofuran neolignans

A convergent synthesis of diversely substituted benzofuran neolignans (8) is described employing a single p-sulfinyl group on the phenols (3) as an ambident functional group for two types of carbon-carbon bond-forming reactions: (i) the direct synthesis of the dihydrobenzofuran skeletons through an aromatic Pummerer-type reaction and (ii) the ipso-substitution of the sulfur functional group by carbon substituents through a ligand exchange reaction.     

Evaluation of beta- and gamma-effects of group 14 elements using intramolecular competition

To evaluate beta-effects and gamma-effects of group 14 elements, we have devised a system in which the intramolecular competition between gamma-elimination of tin and beta-elimination of silicon, germanium, and tin can be examined. Thus, the reactions of alpha-acetoxy(arylmethyl)stannanes with allylmetals (metal = Si, Ge, Sn) in the presence of BF(3).OEt(2) were carried out. The reactions seem to proceed by the initial formation of an alpha-stannyl-substituted carbocation, which adds to an allylmetal to give the carbocation that is beta to the metal and gamma to tin. The beta-elimination of the metal gives the corresponding allylated product, and the gamma-elimination of tin gives the cyclopropane derivative. In the case of allylsilane, the cyclopropane derivative was formed as a major product, whereas in the case of allylgermane the allylated product was formed predominantly. In the case of the allystannane the allylated product was formed exclusively. These results indicate that the gamma-elimination of tin is faster than the beta-elimination of silicon, but slower than the beta-elimination of germanium and tin. The theoretical studies using ab initio molecular orbital calculations of the carbocation intermediates are consistent with the experimental results. The effect of substituents on silicon was also studied. The introduction of sterically demanding substituents on silicon disfavored the beta-elimination of silicon probably because of the retardation of nucleophilic attack on silicon to cleave the carbon-silicon bond.     

Complex Formation of Dimethylaminomethylcalix[4]resorcinarene and 2-Dimethylaminomethylphenol with Cu(II) Salicylaldiminates

Electronic and ESR spectroscopy was used to show that the reactions of dimethylaminomethylcalix[4]resorcinarene with Cu(II) salicylaldiminates bearing alkyl substituents at the salicylaldiminate nitrogen atom give 1 : 1 adducts with the dimethylamino group coordinated axially to the Cu(II) complex. The spatially organized calix[4]resorcinarene structure and the possibility of outer-sphere interactions favor a much higher stability of the adduct compared with the similar complex with 2-dimethylaminomethylphenol. In going from alkyl to aryl substituents, salicylaldiminates are replaced by the anion derived from dimethylaminomethylcalix[4]resocinarene. The same replacement takes place in the reaction with 2-dimethylaminomethylphenol.     

Selective reduction of the nitro group in the presence of the azoxy group. Synthesis of 2-(alkyl-NNO-azoxy)anilines

Tin(ii) chloride selectively reduces the aromatic nitro group to the amino group, the azoxy group remaining intact. This allows the preparation of 2-(R-NNO-azoxy)anilines from 2-(R-NNO-azoxy)nitrobenzenes bearing electron-donating or weak electron-withdrawing substituents (Me or Br) in the benzene ring and alkyl substituents at the distal N atom of the azoxy group. The presence of electron-withdrawing substituents at the azoxy group (for example, CO₂Et) leads to a change in the direction of the reaction resulting in selective reduction of the azoxy group to the hydrazo group.     

Substituent influences on the stability of the ring and chain tautomers in 1,3-O,N-heterocyclic systems: characterization by 13C NMR chemical shifts, PM3 charge densities, and isodesmic reactions

Substituent effects on the stabilities of the ring and chain forms in a tautomeric equilibrium of five series of 2-phenyloxazolidines or -perhydro-1,3-oxazines possessing nine different substitutions at the phenyl moiety have been studied with the aid of 13C NMR spectroscopy and PM3 charge density and energy calculations. Reaction energies of the isodesmic reactions, obtained from the calculated energies of formation, show that electron-donating substituents stabilize both the chain and ring tautomers but the effect is stronger on the stability of the chain form than on that of the ring form. The 13C chemical shift changes induced by the phenyl substituents (SCS) were analyzed by several different single and dual substituent parameter approaches. The best correlations were obtained by equation SCS = rhoFsigmaF + rhoRsigmaR. In all cases the rhoF values and in most cases also the rhoR values were negative at both the C=N and C-2 carbons, indicating a reverse behavior of the electron density. This concept could be verified by the charge density calculations. The 13C chemical shifts of the C=N and C-2 carbons show a normal dependence on the charge density (q(tot)), but the charge density shows a reverse dependence on substitution. Correlation analysis of the 13C chemical shifts, solvent effect (CDCl3 vs DMSO-d6) on the NMR behavior as well as the effect of substituents on the electron densities and on the stabilities of the ring and chain tautomers show that the substituent dependence of the relative stability of the ring and chain tautomers in equilibrium is governed by several different electronic effects. At least intramolecular hydrogen bonding between the imine nitrogen and the hydroxyl group as well as polarization of the C=N bond seem to contribute in the chain form. Stereoelectronic and electrostatic effects are possible to explain the increase in stability of the ring form by electron-donating substituents.     

Synthesis of a new group of aliphatic hydrazide derivatives and the correlations between their molecular structure and biological activity

In view of the growing demand for new compounds showing biological activity against pathogenic microorganisms, such as pathogenic and phytopathogenic fungi, the objective of this study was to synthesize a new group of aliphatic and aromatic derivatives of hydrazide. In consequence of the reactions observed during synthesis, the resulting compounds retained their linear structure. Their structure and lipophilicity, measured by high-performance liquid chromatography (HPLC), were analyzed. Correlations were determined between the compounds' molecular parameters and biological activity against Fusarium solani and Fusarium oxysporum fungi. The investigated compounds were also examined for their antifungal activity against Aspergillus fumigatus. The obtained results indicate that compounds with fluorine-containing substituents penetrate the cell structure more effectively and are characterized by higher antifungal potential than analogues with different substituents.     

Theoretical investigations of the reactivities of saturated five-membered ring N-heterocyclic carbenes with heavier group 14 elements

The potential energy surfaces for the chemical reactions of group 14 carbenes have been studied using density functional theory (B3LYP/LANL2DZ). Five saturated five-membered-ring N-heterocyclic carbene Dipp[upper bond 1 start]N(CH(2))(2)N(Dipp)E[upper bond 1 end]: (five-ring-E:) species, where E = C, Si, Ge, Sn and Pb, have been chosen as model reactants in this work. Also, four kinds of chemical reactions; addition of water, methane insertion, alkene cycloaddition and dimerization, have been used to study the chemical reactivities of these group 14 carbenes. The present theoretical investigations suggest that the relative carbenic reactivity decreases in the order: C > Si > Ge > Sn > Pb. That is, the heavier the group 14 atom (E), the more stable is the carbene towards chemical reactions. This may be the reason that there have been many instances reported of the synthesis and characterization of stable group 14 five-membered-ring N-heterocyclic carbene species with various alkyl protecting substituents at room temperature. Furthermore, the singlet-triplet energy splitting of the five-ring-E:, as described in the configuration mixing model attributed to the work of Pross and Shaik, can be used as a diagnostic tool to predict their reactivities. The results obtained allow a number of predictions to be made.     

Synthesis, structures, and stability of N-donor-stabilized N-silylphosphoranimine cations

A series of DMAP-stabilized (DMAP=4-dimethylaminopyridine) N-silylphosphoranimine cations [DMAPPR(2)==NSiMe(3)](+), bearing R=Cl ([8](+)), Me ([10 a](+)), Me/Ph ([10 b](+)), Ph ([10 c](+)), and OCH(2)CF(3) ([10 d](+)) substituents, have been synthesized from the reactions of the parent phosphoranimines Cl(3)P==NSiMe(3) (3) and XR(2)P==NSiMe(3) (X=Cl (9), Br (11); R=Me (9 a and 11 a), Me/Ph (9 b and 11 b), Ph (9 c and 11 c), and OCH(2)CF(3) (9 d and 11 d)) with DMAP and silver salts as halide abstractors. Reactions in the absence of silver salts yield the corresponding cations, with halide counterions. The stability of the salts is highly dependent on the phosphoranimine substituent and the nature of the counteranion, such that electron-withdrawing substituents and non-coordinating anions yield the most stable salts. X-ray structural determination of the cations reveal extremely short phosphoranimine P--N bond lengths for the cations [8](+) and [10 d](+) (1.47-1.49 A) in which electron-withdrawing substituents are present and a longer phosphoranimine P--N length for the cation [10 a](+) (1.53 A) in which electron-donating substituents are present. Very wide bond angles at nitrogen are observed for the salts containing the cation [10 d](+) (158-166 degrees ) and indicate significant sp hybridization at the nitrogen centre.     

DMOBO: an improvement on the OBO orthoester protecting group

[reaction: see text] Conversion of a carboxylic acid to an orthoester provides protection toward nucleophiles and strong bases. The addition of methyl substituents to the oxetane precursor of the commonly used [2.2.2]-bicyclic OBO orthoester significantly increased the ease of orthoester formation and its resistance to hydrolysis. NMR kinetics show the DMOBO protecting group is formed 85 times faster than the OBO group, and that its stability toward aqueous hydrolysis is 36 times greater. Nucleophilic attack of the ester carbonyl on the oxetane ring was shown by 18O-labeling to take place at the most substituted position.     

Activation of phosphorus by group 14 elements in low oxidation states

The activation of phosphorus remains a popular and competitive area of research driven by the dual goals of finding ways to avoid the environmentally questionable P-Cl compounds applied in many industrial processes and the target of catalytic functionalization of P(4). In recent years the activation, degradation, fragmentation, and functionalization of white phosphorus by compounds with heavier main group elements have become a fertile area of research. The isolation of various carbenes and functionalized silylenes has prompted chemists to investigate their reactions with white phosphorus. The most intriguing fact in these reactions is the subtle change in the substituents may afford strikingly different compounds. For example, from the reaction of P(4) with PhC(NtBu)(2)SiCl a cyclic Si(2)P(2) derivative is obtained, whereas the analogous reaction with PhC(NtBu)(2)SiN(SiMe(3))(2) resulted in an acyclic Si(2)P(4) framework. Similar phenomena have also been observed in the carbene mediated P(4) activation. Apart from these, a new entry point into phosphorus chemistry is the gentle activation of P(4) by an alkyne analogue of tin. In this feature article we have covered the activation of phosphorus by compounds with low valent group 14 elements with special concern to the recent developments in this topic.     

Elimination reactions of N-alkyl-N-chlorothenylamines promoted by MeONa-MeOH and Et(2)NH-MeCN. Effect of the beta-aryl group on the imine-forming transition state

Elimination reactions of N-alkyl-N-chlorothenylamines 1-4 with MeONa-MeOH and Et(2)NH-MeCN have been studied kinetically. The elimination reactions are regiospecific, producing only the conjugated imines. The reactions are second order and exhibit substantial values of Hammett rho and k(H)/k(D), and an E2 mechanism is evident. The relative rates of elimination for Me/Et/i-Pr/t-Bu substituents are 1/0.5/0.2/0.02 with MeONa-MeOH and 1/0.4/0.2/0.06 with Et(2)NH-MeCN. The transition state structure changes toward more product-like as the base is changed from MeONa-MeOH to Et(2)NH-MeCN. Comparison with existing data reveals that the structure of the transition state is relatively insensitive to the beta-aryl group variation.     

The dioxasilepanyl group as a versatile organometallic unit: studies on stability,reactivity, and utility

Organic synthesis is performed based on precise choices of functional groups and reactions employed. In a multistep synthesis, an ideal functional group should be compatible with various reaction conditions and unaltered until it is subjected to a selective conversion. The current study was set out to search for a silicon functionality that meets these criteria. Here we have established a new silicon-based synthetic methodology centred on a bulky 7-membered dialkoxysilyl group (2,4,4,7,7-pentamethyl-1,3,2-dioxasilepan-2-yl) that uniquely has both stability and on-demand reactivity. The exceptional stability of this functional group was corroborated by both experimental and computational studies which demonstrated that key factors for its stability were a 7-membered structure and steric hindrance. In turn, the dioxasilepanyl group was found to become reactive and to be easily transformed in the presence of appropriate activators. Combined with the development of easy and robust methods to introduce the dioxasilepanyl group onto aryl rings, these findings have allowed a shorter and more efficient synthesis of a bioactive molecule, thus demonstrating the potential utility of the easily accessible dioxasilepanyl group in organic synthesis.

A bulky 7-membered dioxasilepanyl group has been established as a new organometallic unit for multistep organic syntheses.     

Structure, Stability, and Lability of Copper(II) Complexes with Triglycine

Equilibrium constants of complex formation, rate constants of chemical exchange reactions, and characteristics of electronic absorption spectra for species detected in aqueous solution of copper(II) with triglycine were determined, and conclusions on the structure of the complexes were made. A possibility of H-bond formation between the ammonium group of the zwitter-ionic form of the ligand and the second peptide oxygen in the anionic form of an adjacent ligand was shown. Kinetics and mechanisms of ligand and proton exchanges in solutions of copper(II) bistripeptide complexes with the ligand containing a deprotonated peptide nitrogen atom were studied. A new mechanism was proposed for hydroxide-catalyzed substitution reactions in copper(II) complexes with tripeptides.     

Intrinsic conformational characteristics of alpha,alpha-diphenylglycine

Quantum mechanical calculations at the B3LYP/6-31+G(d,p) level have been used to investigate the intrinsic conformational preferences of alpha,alpha-diphenylglycine, a simple alpha,alpha-dialkylated amino acid bearing two phenyl substituents on the alpha-carbon, in both the gas phase and aqueous solution. Nine minimum energy conformations have been characterized for the N-acetyl-N'-methylamide derivative within a relative energy range of about 9 kcal/mol. The relative stability of these structures is largely influenced by specific backbone...side chain and side chain...side chain interactions that can be attractive (N-H...pi and C-H...pi) or repulsive (C=O...pi). On the other hand, comparison with the minimum energy conformations calculated for alpha-aminoisobutyric acid, in which the two phenyl substituents are replaced by methyl groups, revealed that the bulky aromatic rings of alpha,alpha-diphenylglycine induce strain in the internal geometry of the peptide. Finally, a set of force-field parameters for classical Molecular Mechanics calculations was developed for the investigated amino acid. Molecular Dynamics simulations in aqueous solutions have been carried out to validate the parameters obtained.